View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17258_low_2 (Length: 585)

Name: NF17258_low_2
Description: NF17258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17258_low_2
NF17258_low_2
[»] chr2 (6 HSPs)
chr2 (157-574)||(28782815-28783232)
chr2 (40-136)||(32401503-32401601)
chr2 (347-574)||(28741995-28742222)
chr2 (338-442)||(28699494-28699598)
chr2 (463-514)||(28699422-28699473)
chr2 (338-436)||(28735000-28735098)
[»] chr8 (6 HSPs)
chr8 (347-514)||(10769397-10769564)
chr8 (463-541)||(2034784-2034862)
chr8 (481-543)||(2055874-2055936)
chr8 (463-514)||(2048105-2048156)
chr8 (481-514)||(2059078-2059111)
chr8 (482-514)||(2052018-2052050)
[»] chr4 (2 HSPs)
chr4 (463-514)||(48904896-48904947)
chr4 (158-194)||(3284202-3284238)
[»] chr6 (1 HSPs)
chr6 (158-218)||(10384036-10384097)


Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 157 - 574
Target Start/End: Complemental strand, 28783232 - 28782815
Alignment:
Q  157 ctatagttccgtttgtattactgtgataaattagggttcagtgttgcaagtaatatatatagttccactccttgccttctttaatgtcatgattctaatt 256  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28783232 ctatagttccgtttgtattactgtaataaattagggttcagtgttgcaagtaatatatatagttccactccttgccttctttaatgtcatgattctaatt 28783133  T
Q  257 attccccctacatgttcttattgtgtgtgtaaggaacttatatatacgaatgtagctaattaatattgttgtaatttgagttacagctggtaacaaatga 356  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28783132 attccccctacacgttcttattgtgtgtgtaaggaacttatatatacgaatgtagctaattaatattgttgtaatttgagttacagctggtaacaaatga 28783033  T
Q  357 caaattcaagagtgtggagcacaaagtgttggcaaacatcataggtcctagagtatctgttgcatgttttttcaatgcagatcttaactctttctcaaac 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28783032 caaattcaagagtgtggagcacaaagtgttggcaaacatcataggtcctagagtatctgttgcatgttttttcaatgcagatcttaactctttctcaaac 28782933  T
Q  457 caatacggacctataaaagaatttttatcagaagacaatcctcccaaatacaaagaaataactatttcagaatatgtagcctactacaatacaaaaggga 556  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28782932 caatacggacctataaaagaatttttatcagaagacaatcctcccaaatacaaagaaataactatttcagaatatgtagcctactacaatacaaaaggga 28782833  T
Q  557 ttgatgggatctctgctc 574  Q
    ||||||||||||||||||    
T  28782832 ttgatgggatctctgctc 28782815  T

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Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 40 - 136
Target Start/End: Original strand, 32401503 - 32401601
Alignment:
Q  40 ttaatgcataagatgag--gtggtggtgcagtcacgtgagacacacatgcacaacttacggacacatttccaattccaacacagggtggagaattcatc 136  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32401503 ttaatgcataagatgagaggtggtggtgcagtcacgtgagacacacatgcacaacttacggacacatttccaattccaacacagtgtggagaattcatc 32401601  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 347 - 574
Target Start/End: Complemental strand, 28742222 - 28741995
Alignment:
Q  347 taacaaatgacaaattcaagagtgtggagcacaaagtgttggcaaacatcataggtcctagagtatctgttgcatgttttttcaatgcagatcttaactc 446  Q
    |||||||||||| |||||||||||| ||||||| |||  | ||||| |  || ||||| |||||||||||||||| ||||||||  |||| || ||   |    
T  28742222 taacaaatgacagattcaagagtgttgagcacagagtactagcaaatactattggtccaagagtatctgttgcatcttttttcagggcaggtcctagagc 28742123  T
Q  447 tttctcaaaccaatacggacctataaaagaatttttatcagaagacaatcctcccaaatacaaagaaataactatttcagaatatgtagcctactacaat 546  Q
          ||| |  || ||||||||||||||| |||||||||||||||| ||||| | ||| | |||||  ||| || |||| | ||||||||||||||||    
T  28742122 acaagaaaagctctatggacctataaaagaaattttatcagaagacaaccctccaagatatagagaaaccacttttacagattttgtagcctactacaat 28742023  T
Q  547 acaaaagggattgatgggatctctgctc 574  Q
     |||||||| ||||||| ||||| ||||    
T  28742022 gcaaaagggcttgatggcatctcagctc 28741995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 338 - 442
Target Start/End: Complemental strand, 28699598 - 28699494
Alignment:
Q  338 tacagctggtaacaaatgacaaattcaagagtgtggagcacaaagtgttggcaaacatcataggtcctagagtatctgttgcatgttttttcaatgcaga 437  Q
    |||||||| ||||||||||||||||||||||||| || || | |||  |||||||   ||| ||||| ||| ||||||||||||| |||||||| ||||     
T  28699598 tacagctgataacaaatgacaaattcaagagtgttgaacatagagtactggcaaatggcattggtccaagaatatctgttgcatgctttttcaaggcagg 28699499  T
Q  438 tctta 442  Q
    |||||    
T  28699498 tctta 28699494  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 514
Target Start/End: Complemental strand, 28699473 - 28699422
Alignment:
Q  463 ggacctataaaagaatttttatcagaagacaatcctcccaaatacaaagaaa 514  Q
    |||||||||| |||||| ||||||||| |||| ||||||| |||||||||||    
T  28699473 ggacctataacagaattattatcagaaaacaaccctcccagatacaaagaaa 28699422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 436
Target Start/End: Complemental strand, 28735098 - 28735000
Alignment:
Q  338 tacagctggtaacaaatgacaaattcaagagtgtggagcacaaagtgttggcaaacatcataggtcctagagtatctgttgcatgttttttcaatgcag 436  Q
    |||||||  |||||||||| |||||||||||||| || || | |||  |||||||   ||| ||||| ||| ||||||||||||| |||||||| ||||    
T  28735098 tacagcttataacaaatgataaattcaagagtgttgaacatagagtactggcaaatgacattggtccaagaatatctgttgcatgctttttcaaggcag 28735000  T

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Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 347 - 514
Target Start/End: Original strand, 10769397 - 10769564
Alignment:
Q  347 taacaaatgacaaattcaagagtgtggagcacaaagtgttggcaaacatcataggtcctagagtatctgttgcatgttttttcaatgcagatcttaactc 446  Q
    ||||||||||||||||||||||||||||||||| |||  | ||||| |   | ||||| ||| ||||||||||||||||||||    | | || ||  ||    
T  10769397 taacaaatgacaaattcaagagtgtggagcacagagttcttgcaaataatgttggtccaagaatatctgttgcatgttttttctgcaccggtcataggtc 10769496  T
Q  447 tttctcaaaccaatacggacctataaaagaatttttatcagaagacaatcctcccaaatacaaagaaa 514  Q
     | |||||| |  || ||||||||||| ||| | |||||||||||||||||||||| ||||| |||||    
T  10769497 atcctcaaagctctatggacctataaaggaactattatcagaagacaatcctcccatatacagagaaa 10769564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 463 - 541
Target Start/End: Original strand, 2034784 - 2034862
Alignment:
Q  463 ggacctataaaagaatttttatcagaagacaatcctcccaaatacaaagaaataactatttcagaatatgtagcctact 541  Q
    ||||||||||| ||| | |||||||||||||||||||| ||||||| ||||| |||  |||| || |||||||| ||||    
T  2034784 ggacctataaaggaactattatcagaagacaatcctcctaaatacagagaaacaacggtttctgattatgtagcttact 2034862  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 543
Target Start/End: Original strand, 2055874 - 2055936
Alignment:
Q  481 ttatcagaagacaatcctcccaaatacaaagaaataactatttcagaatatgtagcctactac 543  Q
    |||||||||||||||||||| |||||||||||||  ||| || | || |||||||||||||||    
T  2055874 ttatcagaagacaatcctcctaaatacaaagaaactactgttgctgattatgtagcctactac 2055936  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 514
Target Start/End: Original strand, 2048105 - 2048156
Alignment:
Q  463 ggacctataaaagaatttttatcagaagacaatcctcccaaatacaaagaaa 514  Q
    |||||||| |||||| | |||||||||||||||||||| ||||||| |||||    
T  2048105 ggacctatgaaagaactattatcagaagacaatcctcctaaatacagagaaa 2048156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 514
Target Start/End: Original strand, 2059078 - 2059111
Alignment:
Q  481 ttatcagaagacaatcctcccaaatacaaagaaa 514  Q
    |||||||||||||||||||||||||||| |||||    
T  2059078 ttatcagaagacaatcctcccaaatacagagaaa 2059111  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 482 - 514
Target Start/End: Original strand, 2052018 - 2052050
Alignment:
Q  482 tatcagaagacaatcctcccaaatacaaagaaa 514  Q
    ||||||||||||||||||||||||||| |||||    
T  2052018 tatcagaagacaatcctcccaaatacagagaaa 2052050  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 514
Target Start/End: Complemental strand, 48904947 - 48904896
Alignment:
Q  463 ggacctataaaagaatttttatcagaagacaatcctcccaaatacaaagaaa 514  Q
    ||||||||||| ||| | ||||| |||||||||||||||||||||| |||||    
T  48904947 ggacctataaaggaactattatctgaagacaatcctcccaaatacagagaaa 48904896  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 3284202 - 3284238
Alignment:
Q  158 tatagttccgtttgtattactgtgataaattagggtt 194  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  3284202 tatagttccgtttttattactgtgatgaattagggtt 3284238  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 10384036 - 10384097
Alignment:
Q  158 tatagttccgtttgtattactgtgataaattaggg-ttcagtgttgcaagtaatatatatag 218  Q
    ||||||| | ||||||||||||||||||||||||| || ||| ||  |||||||||||||||    
T  10384036 tatagtttcatttgtattactgtgataaattagggttttagtattataagtaatatatatag 10384097  T

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