View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17258_low_3 (Length: 450)
Name: NF17258_low_3
Description: NF17258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17258_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 27 - 360
Target Start/End: Complemental strand, 30959783 - 30959451
Alignment:
| Q |
27 |
gacaaatatgtcttgaatatttgatagcttttttgacaaataaacaatttaattgggaaaggtat-aagcagaaattagaatgggttactttacatatca |
125 |
Q |
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| T |
30959783 |
gacaaatatgtcttgaatatttgatagcttttttgacaaa--aacaattaaattgggaaatgtattaagcagaaattagaatgggttattttacatatca |
30959686 |
T |
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| Q |
126 |
ctgaaaaagttattttacttatctgaagttgcatggtctaaaattagtgttgcagttttgtttaaaattactaaattgagttggaatgctgatattttgt |
225 |
Q |
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| T |
30959685 |
ctgaaaaagttattttacttatctgaagttgcatggtctaaaattagtgtcgcagatttgtttaaaattactaaattgagttgaaatgctgatattttgt |
30959586 |
T |
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| Q |
226 |
aatttgttaacgattgactgacttcaagtactaaagccaaatttcttttaaagtgcaaataccaaaaccagacnnnnnnnnntgcagagactaataccgc |
325 |
Q |
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| T |
30959585 |
aatttgttaacgattgactgacttcaagtactaaaggcaaatttcttttaaagtgcaaataccaaaaccagacaaaaaaaattgcagagactaataccgc |
30959486 |
T |
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| Q |
326 |
aaagtgctacaattgcatgaactaattacatattt |
360 |
Q |
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| T |
30959485 |
aaagtgctacaattgcatgaactaattacatattt |
30959451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 345 - 437
Target Start/End: Complemental strand, 30959437 - 30959353
Alignment:
| Q |
345 |
aactaattacatatttaaccaaatatagaagtggnnnnnnnnctttcttaattgctatttgtatatactcctaacgaatttggtgttattttt |
437 |
Q |
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| T |
30959437 |
aactaattacatatttaaccaaatatagaagtggtttt-----ttttttaattgctatttgtat---ctcctaacgaatttggtgttattttt |
30959353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 190
Target Start/End: Complemental strand, 30985613 - 30985572
Alignment:
| Q |
149 |
tgaagttgcatggtctaaaattagtgttgcagttttgtttaa |
190 |
Q |
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| T |
30985613 |
tgaagttgcatggtctaaagttagtgttgcaattttgtttaa |
30985572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 190
Target Start/End: Complemental strand, 30991777 - 30991736
Alignment:
| Q |
149 |
tgaagttgcatggtctaaaattagtgttgcagttttgtttaa |
190 |
Q |
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| T |
30991777 |
tgaagttgcatggtctaaagttagtgttgcaattttgtttaa |
30991736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 428
Target Start/End: Complemental strand, 30953919 - 30953884
Alignment:
| Q |
393 |
taattgctatttgtatatactcctaacgaatttggt |
428 |
Q |
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| T |
30953919 |
taattgctatttgtatatactcctaacaaatttggt |
30953884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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