View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17258_low_4 (Length: 371)
Name: NF17258_low_4
Description: NF17258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17258_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 105 - 357
Target Start/End: Original strand, 33602803 - 33603051
Alignment:
| Q |
105 |
tcacaccaaaaaacgaaaacctattttagggttcgtataaaaattactacttttgtgtagaggattaggactgattcaacatataatacactattttgca |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33602803 |
tcacaccaaaaaacgaaaacctattttagggttcgtataaaaattactacttttgtgtagaggattaggactgattcaacatataatacactattctgca |
33602902 |
T |
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| Q |
205 |
tgatgaaatctcttaattaatatatcctaagacaatctacgaaaactttaagagaggtttatacaggaaaatctaagcctataaatttaaacgatctcgt |
304 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33602903 |
tgatgaaatctcttaa----tatatcctaagacaatctacgaaaactttaagagaggtttatacaggaaaatctaagcctataaatttaaacgacctcgt |
33602998 |
T |
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| Q |
305 |
cttttaggttaattgacgcttcttgacttctatattttattgaaagttgtctt |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33602999 |
cttttaggttaattgacgcttcttgacttctatattttattgaaagttgtctt |
33603051 |
T |
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