View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17258_low_6 (Length: 347)
Name: NF17258_low_6
Description: NF17258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17258_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 53 - 323
Target Start/End: Original strand, 41380713 - 41380983
Alignment:
| Q |
53 |
aatatttaaagattcctacccaattagtccaccaagacaagctgaatctctttggattgtagagtttaagccacatgatacatggaagctgaaaatttat |
152 |
Q |
| |
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|||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41380713 |
aataattaaagatacctacccaattaatccaccaagacaagctgaatctctttggattgtagagtttaagccacatgatacatggaagctgaaaatttaa |
41380812 |
T |
|
| Q |
153 |
tagaatgaaaagatgagtaagattatgattatctaagaaaatttagtaattatgtttacaatttctcatggcttacaaaatatgttgttggagcaaaagc |
252 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41380813 |
tagaatgaaaagatgagtaagattatgattatctaagaaaatttagtaattatatttacaatttctcatggcttacaaaatatgttgttggagcaaaagc |
41380912 |
T |
|
| Q |
253 |
aaatcctccaaaaaatcccaggaggccaccaaaaaatgggaaggtaatggctaagaacattgttaatgctg |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41380913 |
aaatcctccaaaaaatcccaggaggccaccaaaaaatgggaaggtaatggctaagaacattgttaatgctg |
41380983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 224 - 323
Target Start/End: Complemental strand, 43855252 - 43855153
Alignment:
| Q |
224 |
cttacaaaatatgttgttggagcaaaagcaaatcctccaaaaaatcccaggaggccaccaaaaaatgggaaggtaatggctaagaacattgttaatgctg |
323 |
Q |
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||||||||||||||||| |||||||| || ||||||||||||||||| ||||| ||||||| ||||||||||| ||| | | |||||||| ||||||| |
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| T |
43855252 |
cttacaaaatatgttgtgggagcaaatgccaatcctccaaaaaatccaaggagagcaccaaagaatgggaaggttatgcccacaaacattgtgaatgctg |
43855153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 43856685 - 43856729
Alignment:
| Q |
223 |
gcttacaaaatatgttgttggagcaaaagcaaatcctccaaaaaa |
267 |
Q |
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||||||||| ||||| ||||||||||| |||||||||||||||| |
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| T |
43856685 |
gcttacaaagtatgtcattggagcaaaaacaaatcctccaaaaaa |
43856729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 53 - 323
Target Start/End: Original strand, 7970282 - 7970554
Alignment:
| Q |
53 |
aatatttaaagattcctacccaattagtccaccaagacaagctgaatctctttggattgtagagtttaagccacatgatacatggaagctgaaaatttat |
152 |
Q |
| |
|
|||| |||||||| |||||||||||| |||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7970282 |
aataattaaagatacctacccaattaatccaccaagataagctgaatctttttggtttgtagagtttaagccacatgatacatggaagctgaaaatttaa |
7970381 |
T |
|
| Q |
153 |
tagaatgaaaagatgagtaagattatgattat-ctaagaaaatttagtaattatgtttacaa-tttctcatggcttacaaaatatgttgttggagcaaaa |
250 |
Q |
| |
|
|||||||||||| | || |||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||| |
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|
| T |
7970382 |
tagaatgaaaagttaagcaagattatgattatcctaagaaaatttagtaattatatttacaattttctcatggcttacaaaatatgttgttggcgcaaaa |
7970481 |
T |
|
| Q |
251 |
gcaaatcctccaaaaaatcccaggaggccaccaaaaaatgggaaggtaatggctaagaacattgttaatgctg |
323 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| |||||||||||||||||||| | ||||||||||||||||| |
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| T |
7970482 |
gcaaatcctccaaaaaatcctaagaggccaccgaaaaatgggaaggtaatggcaatgaacattgttaatgctg |
7970554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 53 - 323
Target Start/End: Complemental strand, 8043426 - 8043155
Alignment:
| Q |
53 |
aatatttaaagattcctacccaattagtccaccaagacaagctgaatctctttggattgtagagtttaagccacatgatacatggaagctgaaaatttat |
152 |
Q |
| |
|
|||| |||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8043426 |
aataattaaagatgcctacccaattaatccaccaagacaagctgaatctctttggtttgtagagtttaagccacacaatacatggaagctgaaaatttaa |
8043327 |
T |
|
| Q |
153 |
tagaatgaaaagatgagtaagattatgattatc-taagaaaatttagtaattatgtttacaatttctcatggcttacaaaatatgttgttggagcaaaag |
251 |
Q |
| |
|
|||||||||||| | || ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||| |
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|
| T |
8043326 |
tagaatgaaaagttaagcaagattatgattatcctaagaaaatttagtaattacatttacaatttctcatggcttacataatatgttgctggagcaaaag |
8043227 |
T |
|
| Q |
252 |
caaatcctccaaaaaatcccaggaggccaccaaaaaatgggaaggtaatggctaagaacattgttaatgctg |
323 |
Q |
| |
|
||||||||||||||||||| | ||||||||| |||||||||||||||||||| | ||||||||||||||||| |
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|
| T |
8043226 |
caaatcctccaaaaaatcctaagaggccaccgaaaaatgggaaggtaatggcaatgaacattgttaatgctg |
8043155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 53 - 323
Target Start/End: Complemental strand, 8033489 - 8033219
Alignment:
| Q |
53 |
aatatttaaagattcctacccaattagtccaccaagacaagctgaatctctttggattgtagagtttaagccacatgatacatggaagctgaaaatttat |
152 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| || | |||||||||||||||||||||||||| | || |
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|
| T |
8033489 |
aataattaaagatacctacccaattagtccaccaagagaagctgaatctctttggtttgtaaaggattagccacatgatacatggaagctgaaa-tgtaa |
8033391 |
T |
|
| Q |
153 |
tagaatgaaaagatgagtaagattatgattatc-taagaaaatttagtaattatgtttacaatttctcatggcttacaaaatatgttgttggagcaaaag |
251 |
Q |
| |
|
|| |||||||||||||| || |||||||| ||| ||||||||| ||| ||||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8033390 |
tataatgaaaagatgagcaaaattatgataatcctaagaaaatccagtgattatatttacaatttttcatggcttacaaaatatgttgttggagcaaaag |
8033291 |
T |
|
| Q |
252 |
caaatcctccaaaaaatcccaggaggccaccaaaaaatgggaaggtaatggctaagaacattgttaatgctg |
323 |
Q |
| |
|
| ||||||||||||||||| || |||||||| ||||||||||| ||||| || | ||||||||| ||||||| |
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|
| T |
8033290 |
cgaatcctccaaaaaatcctagaaggccaccgaaaaatgggaatgtaatagcaatgaacattgtgaatgctg |
8033219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 220 - 323
Target Start/End: Original strand, 7977223 - 7977326
Alignment:
| Q |
220 |
atggcttacaaaatatgttgttggagcaaaagcaaatcctccaaaaaatcccaggaggccaccaaaaaatgggaaggtaatggctaagaacattgttaat |
319 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||||||| || || |||||| | ||||||||||| ||||| || | ||||||||| ||| |
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|
| T |
7977223 |
atggcttacaaagtatgttgttggagcaaaagcaaaccctccaaaaaaccctagaaggccatcgaaaaatgggaatgtaatagcaatgaacattgtgaat |
7977322 |
T |
|
| Q |
320 |
gctg |
323 |
Q |
| |
|
|||| |
|
|
| T |
7977323 |
gctg |
7977326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 7976913 - 7976993
Alignment:
| Q |
69 |
tacccaattagtccaccaagacaagctgaatctctttggattgtagagtttaagccacatgatacatggaagctgaaaatt |
149 |
Q |
| |
|
||||||||||| |||||| ||||||| |||| | |||| ||||||| | |||||||||||||||||||||||||||||| |
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|
| T |
7976913 |
tacccaattagcccaccatgacaagccgaattttcttggtttgtagattgaaagccacatgatacatggaagctgaaaatt |
7976993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 14197281 - 14197346
Alignment:
| Q |
223 |
gcttacaaaatatgttgttggagcaaaagcaaatcctccaaaaaatcccaggaggccaccaaaaaa |
288 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||| || || ||||| ||||| |
|
|
| T |
14197281 |
gcttacaaagtatgttgttggagcaaaagcaaatccaccaaaaaatcctagtagaccaccgaaaaa |
14197346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 81 - 151
Target Start/End: Original strand, 14197141 - 14197211
Alignment:
| Q |
81 |
ccaccaagacaagctgaatctctttggattgtagagtttaagccacatgatacatggaagctgaaaattta |
151 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||| | ||||||||| || ||||| ||||||||||||| |
|
|
| T |
14197141 |
ccaccaagacaagctgaatctccttggtttgtagattgcaagccacattatgcatggtagctgaaaattta |
14197211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 84 - 139
Target Start/End: Complemental strand, 34410630 - 34410575
Alignment:
| Q |
84 |
ccaagacaagctgaatctctttggattgtagagtttaagccacatgatacatggaa |
139 |
Q |
| |
|
||||||||||| |||||||| || ||||| ||||||||||| ||||||||||||| |
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|
| T |
34410630 |
ccaagacaagccaaatctcttaggtttgtaaagtttaagccatatgatacatggaa |
34410575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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