View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17258_low_7 (Length: 305)
Name: NF17258_low_7
Description: NF17258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17258_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 41380669 - 41380380
Alignment:
| Q |
1 |
catgtttaatatttgctccatatattacagatatgtattgttcttggggttagtataatgattctagcacccattggagcattgaggagtattatacttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41380669 |
catgtttaatatttgctccatatattacagatatgtattgttcttggggtatgtataatgattctagcacccattggagcattgaggagtattatccttg |
41380570 |
T |
|
| Q |
101 |
aagccaagacctaccagttttactcttaaactccttggcaatgatgatgtctattttctctatgattgatttatttgctgccaataaactatctattttc |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41380569 |
aagccaagtcctaccagttttactcttaaactccttgacaatgatgatgtctattttctctatgattgatttatttgctgccaataaactatctattttc |
41380470 |
T |
|
| Q |
201 |
caatttcaatgtacataattgagtttcaattgaagaacaaatgaaggaaattgcttctattcaatgatat-ttttgtgtgtggaagattc |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
41380469 |
caatttcaatgtacataattgagtttcaattgaagaacaaatgaaggaaattgcttgtattcaatgatattttttgtgtgtggaagattc |
41380380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 5e-56; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 7970231 - 7970105
Alignment:
| Q |
1 |
catgtttaatatttgctccatatattacagatatgtattgttcttggggttagtataatgattctagcacccattggagcattgaggagtattatacttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7970231 |
catgtttaatatttgctccatatattacagatatgtattgttcttggggtatgcataatgattttagcacccattggagcattgaggagtattatacttg |
7970132 |
T |
|
| Q |
101 |
aagccaagacctaccagttttactctt |
127 |
Q |
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||||||||||||||||||||||||||| |
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| T |
7970131 |
aagccaagacctaccagttttactctt |
7970105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 8043478 - 8043604
Alignment:
| Q |
1 |
catgtttaatatttgctccatatattacagatatgtattgttcttggggttagtataatgattctagcacccattggagcattgaggagtattatacttg |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
8043478 |
catgtttaatatttgctccatatgttacagatatgtgttgttcttggggtatgtataatggttctagcacccattggagcattgaggagtattatacttg |
8043577 |
T |
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| Q |
101 |
aagccaagacctaccagttttactctt |
127 |
Q |
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||||||||||||||||||||||||||| |
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| T |
8043578 |
aagccaagacctaccagttttactctt |
8043604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 154 - 289
Target Start/End: Original strand, 8043677 - 8043814
Alignment:
| Q |
154 |
ttttctctatgattgatttatttgctgccaataaactatctattttccaatttcaatgtacataattgagtttcaattgaagaac-aaatgaaggaaatt |
252 |
Q |
| |
|
|||||||||||||| ||||||| |||||||| ||||||||||||| ||||||||||||||||| |||||||||||| | ||||| |||||||||||||| |
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| T |
8043677 |
ttttctctatgatttgtttattttctgccaatgaactatctatttttcaatttcaatgtacatatttgagtttcaatggtagaacaaaatgaaggaaatt |
8043776 |
T |
|
| Q |
253 |
gcttctattcaatgata-tttttgtgtgtggaagattc |
289 |
Q |
| |
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| ||||||||||||||| |||||||||||||||||||| |
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| T |
8043777 |
gtttctattcaatgatattttttgtgtgtggaagattc |
8043814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 25 - 127
Target Start/End: Original strand, 8033566 - 8033668
Alignment:
| Q |
25 |
ttacagatatgtattgttcttggggttagtataatgattctagcacccattggagcattgaggagtattatacttgaagccaagacctaccagttttact |
124 |
Q |
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||||||||| |||||||| |||| | ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8033566 |
ttacagataagtattgttattggcttatgtataatgattttggcacccattggagcattgaggagtattatacttgaagccaagacctaccagttttact |
8033665 |
T |
|
| Q |
125 |
ctt |
127 |
Q |
| |
|
||| |
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|
| T |
8033666 |
ctt |
8033668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 8033741 - 8033814
Alignment:
| Q |
154 |
ttttctctatgattgatttatttgctgccaataaactatctattttccaatttcaatgtacataattgagtttc |
227 |
Q |
| |
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|||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
8033741 |
ttttctctatgatttatttattttctgccaatgaactatctattttccaatttcaatgtacataactgagtttc |
8033814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 133 - 227
Target Start/End: Complemental strand, 7970065 - 7969970
Alignment:
| Q |
133 |
ccttggcaatgatgatgtctattttctctatgattgatt-tatttgctgccaataaactatctattttccaatttcaatgtacataattgagtttc |
227 |
Q |
| |
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||||| |||||||||| ||||||||||||||| || | ||||| ||| |||| ||||||||||||||||||||||||| |||||| |||||||| |
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| T |
7970065 |
ccttgacaatgatgatatctattttctctatgcttttctctattttctggcaatgaactatctattttccaatttcaatgcacataactgagtttc |
7969970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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