View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17259_high_1 (Length: 836)
Name: NF17259_high_1
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17259_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 732; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 732; E-Value: 0
Query Start/End: Original strand, 19 - 825
Target Start/End: Complemental strand, 19508818 - 19508017
Alignment:
| Q |
19 |
cttctatttatgttccatcatagttcaagaatttagattcatcttaagcatagaggttgagttgtgtttggtattttgcattgacaacattgtccnnnnn |
118 |
Q |
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| T |
19508818 |
cttctatttatgttccatcatagttcaagaatttagattcatcttaagcatagacgttgagttgtgtttggtattttgcattgacaacattgtccttttt |
19508719 |
T |
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| Q |
119 |
nngtcataccaattaccaaatcaagtactcaactaaccatgcttgaaatccaaggctacgtagtattattcctattatggttcatttcaagtattttcat |
218 |
Q |
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|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19508718 |
t-gtcacaccaattaccaaatcaagtactcaac----catgcttgaaatccaaggctacgtagtattattcctattatggttcatttcaagtattttcat |
19508624 |
T |
|
| Q |
219 |
taggtcacttttcaagaaatccgtttgttacaaattaccacctggaccaccaatttcatttccaatcttaggacatgcaccatatcttagatcacttctt |
318 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19508623 |
taggtcacttttcaagaaatcagtgtgttacaaattaccacctggaccaccaatttcatttccaatcttaggacatgcaccatatcttagatcacttctt |
19508524 |
T |
|
| Q |
319 |
cataaatcactttacaaactttcaaatcgttatggacctttaatgcatattatgctaggttcacaacatgtagtagttgcatcaactgctgaaagtgcta |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19508523 |
cataaatcactttacaaactttcaaatcgttatggacctttaatgcatattatgctaggttcacaacatgtagtagttgcatcaactgctgaaagtgcta |
19508424 |
T |
|
| Q |
419 |
agcaaattttaaagacttgcgaagagtcatttaccaatagacctattatgattgcaagtgagaatttaacatatgatgctgctgattattttttcatacc |
518 |
Q |
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| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
19508423 |
aacaaattttaaagacttgtgaagagtcatttaccaatagacctattatgattgcaagtgagaatttaacatatggtgctgctgattattttttcatacc |
19508324 |
T |
|
| Q |
519 |
ttatggaaattattggaggtttcttaagaagctttgtatgactgagcttcttagtgggaaaactcttgaacactttgttcacattcgtgaggatgaaata |
618 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19508323 |
ttatggaaattattggaggtttcttaagaagctttgtatgactgagcttcttagtgggaaaactcttgaacactttgttcacattcgtgaggatgaaata |
19508224 |
T |
|
| Q |
619 |
aagtgttttatggggacccttttggaaatatctaaaaatggtaaaccaattgaaatgaggcatgaacttattaggcatactaataacatcatttctagaa |
718 |
Q |
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| T |
19508223 |
aagtgttttatggggacccttttggaaatatctaaaaatggtaaaccaattgaaatgaggcacgaacttattaggcatactaataacatcatttctagaa |
19508124 |
T |
|
| Q |
719 |
tgactatgggaaaaaagagtagtgggatgaatgatgaagttggtcaattgagaaaagttgttagggaaattggtgaacttcttggtgcttttaatttagg |
818 |
Q |
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| T |
19508123 |
tgactatgggaaaaaagagtagtgggatgaatgatgaagttggtcaattgagaaaagttgttagggaaattggtgaacttcttggtgcttttaatttagg |
19508024 |
T |
|
| Q |
819 |
tgatatt |
825 |
Q |
| |
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||||||| |
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| T |
19508023 |
tgatatt |
19508017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 4e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 167 - 351
Target Start/End: Complemental strand, 14293806 - 14293619
Alignment:
| Q |
167 |
tccaaggctacgtagtattattcctattatggttcatttcaagtattttcattaggtcacttttcaagaaatccgtttgttacaaattaccacctggacc |
266 |
Q |
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|||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||| | ||||||||||||||||||||| |
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| T |
14293806 |
tccaaggctacgtaatattattcctattggggttcatttcaactattttcattaggtcacttttcaaaaaatccgtgtattacaaattaccacctggacc |
14293707 |
T |
|
| Q |
267 |
accaatttcatttccaatcttaggacatgcaccatatcttag---atcacttcttcataaatcactttacaaactttcaaatcgttat |
351 |
Q |
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||||||||| |||||||||||||| |||||||| |||||||| |||||| |||||||||||| |||| |||||||||||||||||| |
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| T |
14293706 |
accaatttcgtttccaatcttagggcatgcaccttatcttagattatcactccttcataaatcattttataaactttcaaatcgttat |
14293619 |
T |
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