View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17259_high_10 (Length: 570)
Name: NF17259_high_10
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17259_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 241 - 549
Target Start/End: Original strand, 37554481 - 37554788
Alignment:
| Q |
241 |
cctcccttacgcgctcgtgagtgc-aacttacacacatatatttgtgtgcatgtgtgcgcgcaattctacaaattaatataaatgtttccctcgcaactc |
339 |
Q |
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| T |
37554481 |
cctcccttacgcgctcgcgagcgcgcactt--acacatatatttgtatgcatgtgtgcgcgcaattcaacaaattaatataaatgtttccctcgcaactc |
37554578 |
T |
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| Q |
340 |
aaattttatgggtttgttatgatcttcattttcttcctcttcatatatatcaacattcatcattttctttgatctttctccatcatttgaactatccacc |
439 |
Q |
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| T |
37554579 |
aaattttatgggtttgttatgatcttcattttcttcctcttcatatatatcaacattcatcattttctttgatctttctccatcatttgaactatccacc |
37554678 |
T |
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| Q |
440 |
atctcttattgctacgtgggttagtaacaatctttgtggagaagcatggcatggggtgatctacaataacacagttattgagaatcaatttacctagaga |
539 |
Q |
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| T |
37554679 |
atctcttcttgctacgtgggttagtaacaatctttgtggagaagcatggcatggggtgatctacaataacacagttattgagaatcaatttgcctagaga |
37554778 |
T |
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| Q |
540 |
aggtctcaat |
549 |
Q |
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| T |
37554779 |
aggtctcaat |
37554788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 37554247 - 37554371
Alignment:
| Q |
14 |
gaacgttcgagctctatttttattagcgacaaagttggccccaacaattatttttattgttgaagttgataaataatatgggaacaccacacagaggagg |
113 |
Q |
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| T |
37554247 |
gaacgttcgagctctgtttttattagcgacaaagttggccccaacaattatttttattgttgaagttgataaataatatacgaacaccacacagaggagg |
37554346 |
T |
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| Q |
114 |
attaaatttgaattcatgtcccttt |
138 |
Q |
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| T |
37554347 |
attaaattttaattcatgtcccttt |
37554371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 266 - 355
Target Start/End: Complemental strand, 37556444 - 37556356
Alignment:
| Q |
266 |
acttacacacatatatttgtgtgcatgtgtgcgcgcaattctacaaattaatataaatgtttccctcgcaactcaaattttatgggtttg |
355 |
Q |
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| T |
37556444 |
acttacacgcatat-tttgtatgtatgtgtgcgcgcaatgctacaaattaatataaatgtttccctcacaactcaaattttatgggtttg |
37556356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 407
Target Start/End: Complemental strand, 39215093 - 39215043
Alignment:
| Q |
357 |
tatgatcttcattttcttcctcttcatatatatcaacattcatcattttct |
407 |
Q |
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| T |
39215093 |
tatgatcttcatcgtcttcctcttcatatacatcgacattcatcattttct |
39215043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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