View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17259_high_13 (Length: 536)

Name: NF17259_high_13
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17259_high_13
NF17259_high_13
[»] chr6 (3 HSPs)
chr6 (1-536)||(34216697-34217240)
chr6 (179-234)||(31437549-31437604)
chr6 (92-126)||(14385448-14385482)
[»] chr7 (3 HSPs)
chr7 (132-304)||(11482726-11482906)
chr7 (1-79)||(11482902-11482980)
chr7 (329-393)||(11482645-11482709)
[»] chr3 (2 HSPs)
chr3 (1-227)||(21093356-21093581)
chr3 (1-50)||(14679838-14679887)
[»] chr8 (4 HSPs)
chr8 (392-467)||(14621911-14621986)
chr8 (496-533)||(9684711-9684748)
chr8 (92-126)||(17271738-17271772)
chr8 (91-127)||(45270546-45270582)
[»] chr4 (2 HSPs)
chr4 (24-127)||(19551447-19551550)
chr4 (91-126)||(3009039-3009074)
[»] scaffold0567 (1 HSPs)
scaffold0567 (91-126)||(839-874)
[»] scaffold0490 (1 HSPs)
scaffold0490 (1-50)||(12090-12139)
[»] scaffold0125 (1 HSPs)
scaffold0125 (1-50)||(31437-31486)
[»] scaffold0061 (1 HSPs)
scaffold0061 (1-50)||(38085-38134)
[»] scaffold0017 (1 HSPs)
scaffold0017 (1-50)||(160645-160694)
[»] chr2 (1 HSPs)
chr2 (1-50)||(20380961-20381010)
[»] chr5 (1 HSPs)
chr5 (173-233)||(13644669-13644729)


Alignment Details
Target: chr6 (Bit Score: 499; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 1 - 536
Target Start/End: Original strand, 34216697 - 34217240
Alignment:
Q  1 ttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaacagatccagatagaagcgtgagtctgcttctgtgaatactaattaaaatcc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34216697 ttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaacggatccagatagaagcgtgagtctgcttctgtgaatactaattaaaatcc 34216796  T
Q  101 ttcgtccattgggagagacgaaggagatctggcttcaaatcaatggtaccagccgaccaaattttttgtaagtcctctgccgactcaaaatgaaaatcgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34216797 ttcgtccattgggagagacgaaggagatctggcttcaaatcaatggtaccagccgaccaaattttttgtaagtcctctgccgactcaaaatgaaaatcgt 34216896  T
Q  201 aatagcccctgccaagcggtaccattttccatttgttcaca--------tacttttccaagcttagtaaccaaatcatgctccatttatggcttgtcgcc 292  Q
    |||||||| ||||||||||||||||||||||||| ||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34216897 aatagcccatgccaagcggtaccattttccatttattcacagtcttccatacttttccaagcttagtaaccaaatcatgctccatttatggcttgtcgcc 34216996  T
Q  293 cttattcaaggttagacgtccccagagagcattttgacattccgccaatcctttcgagtattctacctgaccaattctgatacaaagcgcgtcacccttg 392  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34216997 cttattcaaggtcagacgtccccagagagcattttgacattccgccaatcctttcgagtattctacctgaccaattctgatacaaagcgcgtcacccttg 34217096  T
Q  393 aaacattatgattcatatatgttttagatctatttcatgtatcactgcgagtatgatggaaaaatattttttactcgccggttcctatagataaaattca 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34217097 aaacattatgattcatatatgttttagatctatttcatgtatcactgcgagtatgatggaaaaatattttttactcgccggttcctatagataaaattca 34217196  T
Q  493 ccattgatgagaggaacaaaacagatggggtctcaccttatctc 536  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  34217197 ccattgatgagaggaacaaaacagatggggtctcaccttatctc 34217240  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 31437549 - 31437604
Alignment:
Q  179 gccgactcaaaatgaaaatcgtaatagcccctgccaagcggtaccattttccattt 234  Q
    |||||||||||||||||||| ||||| ||||| |||||||  ||||||||||||||    
T  31437549 gccgactcaaaatgaaaatcataatatccccttccaagcgacaccattttccattt 31437604  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 92 - 126
Target Start/End: Original strand, 14385448 - 14385482
Alignment:
Q  92 ttaaaatccttcgtccattgggagagacgaaggag 126  Q
    |||||||||||||||||||||||||| ||||||||    
T  14385448 ttaaaatccttcgtccattgggagaggcgaaggag 14385482  T

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Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 132 - 304
Target Start/End: Complemental strand, 11482906 - 11482726
Alignment:
Q  132 gcttcaaatcaatggtaccagccgaccaaattttttgtaagtcctctgccgactcaaaatgaaaatcgtaatagcccctgccaagcggtaccattttcca 231  Q
    |||||||||||| | ||||||  |||||| ||||| |||||||||||||||||| || ||||||||||||||||||||| | |||  |||||||||||||    
T  11482906 gcttcaaatcaacgataccagttgaccaattttttcgtaagtcctctgccgactaaatatgaaaatcgtaatagccccttcaaagtagtaccattttcca 11482807  T
Q  232 tttgttca--------catacttttccaagcttagtaaccaaatcatgctccatttatggcttgtcgcccttattcaaggt 304  Q
    ||| ||||        ||||||||||| |||||||||||| |||  ||  | || |||||||||| ||||||||| |||||    
T  11482806 tttattcatagtcttccatacttttccgagcttagtaaccgaattctgagctatgtatggcttgttgcccttatttaaggt 11482726  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 11482980 - 11482902
Alignment:
Q  1 ttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaacagatccagatagaagcgtgagtctgcttc 79  Q
    |||||||  ||||||||||| |||||||||||||||||| ||||||| || | | ||||||||||| ||||||||||||    
T  11482980 ttccttcggtgtttgttcccaccaatattcttgcggtaattcaaccatacgggttcagatagaagcatgagtctgcttc 11482902  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 393
Target Start/End: Complemental strand, 11482709 - 11482645
Alignment:
Q  329 acattccgccaatcctttcgagtattctacctgaccaattctgatacaaagcgcgtcacccttga 393  Q
    |||||| |||||| |||| | ||||||| |||||||||||||||| || | ||||||| ||||||    
T  11482709 acattctgccaatacttttgtgtattcttcctgaccaattctgatgcataacgcgtcaaccttga 11482645  T

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Target: chr3 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 21093581 - 21093356
Alignment:
Q  1 ttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaacagatccagatagaagcgtgagtctgcttctgtgaatactaattaaaatcc 100  Q
    ||||||||| ||  ||||| || |||||||||| ||||| || ||||| | |||||| || ||||| |||||||| ||||||||||| | |  ||| ||     
T  21093581 ttccttcaaagtacgttcctgctaatattcttgtggtaattcgaccaagcggatccaaatggaagcatgagtctggttctgtgaataatgagaaaagtct 21093482  T
Q  101 ttcgtccattgggagagacgaaggagatctggcttcaaatcaatggtaccagccgaccaaattttttgtaagtcctctgccgactcaaaatgaaaatcgt 200  Q
    ||   ||||||||||| |||||||||| ||||| | ||||  || |||| |||||||||||| ||  |||||||||| |||||||||||||| || || |    
T  21093481 tttagccattgggagaaacgaaggagacctggccttaaattgatagtactagccgaccaaatattccgtaagtcctcggccgactcaaaatg-aagtcat 21093383  T
Q  201 aatagcccctgccaagcggtaccattt 227  Q
    |||| ||||| |||||||| |||||||    
T  21093382 aataaccccttccaagcggcaccattt 21093356  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 14679838 - 14679887
Alignment:
Q  1 ttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac 50  Q
    ||||||||||||  ||||||||||||| ||||||||||| ||||||||||    
T  14679838 ttccttcaatgtacgttcccgccaatactcttgcggtaactcaaccaaac 14679887  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 392 - 467
Target Start/End: Complemental strand, 14621986 - 14621911
Alignment:
Q  392 gaaacattatgattcatatatgttttagatctatttcatgtatcactgcgagtatgatggaaaaatattttttact 467  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||  |||||  || ||||||||||||||||||    
T  14621986 gaaacattatgattcttatatgttttagatcaatttcatgtatcacaacgagtgggagggaaaaatattttttact 14621911  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 496 - 533
Target Start/End: Complemental strand, 9684748 - 9684711
Alignment:
Q  496 ttgatgagaggaacaaaacagatggggtctcaccttat 533  Q
    |||||||||||||||||| |||||||||||||||||||    
T  9684748 ttgatgagaggaacaaaatagatggggtctcaccttat 9684711  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 92 - 126
Target Start/End: Complemental strand, 17271772 - 17271738
Alignment:
Q  92 ttaaaatccttcgtccattgggagagacgaaggag 126  Q
    |||||||||||||||||||||||||| ||||||||    
T  17271772 ttaaaatccttcgtccattgggagaggcgaaggag 17271738  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 45270546 - 45270582
Alignment:
Q  91 attaaaatccttcgtccattgggagagacgaaggaga 127  Q
    ||||||||||||||||||||| || ||||||||||||    
T  45270546 attaaaatccttcgtccattgagaaagacgaaggaga 45270582  T

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Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 19551550 - 19551447
Alignment:
Q  24 aatattcttgcggtaagtcaaccaaacagatccagatagaagcgtgagtctgcttctgtgaatactaattaaaatccttcgtccattgggagagacgaag 123  Q
    |||||||||| || || |||||||| |  ||||| || ||||||||||| ||||||| |||||| | |||||| ||||||||| |||| |||||||||||    
T  19551550 aatattcttggggcaattcaaccaagcgaatccaaatggaagcgtgagtttgcttctatgaataatgattaaagtccttcgtctattgtgagagacgaag 19551451  T
Q  124 gaga 127  Q
    ||||    
T  19551450 gaga 19551447  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 126
Target Start/End: Original strand, 3009039 - 3009074
Alignment:
Q  91 attaaaatccttcgtccattgggagagacgaaggag 126  Q
    ||||||||||||||||||||||||||| ||||||||    
T  3009039 attaaaatccttcgtccattgggagaggcgaaggag 3009074  T

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Target: scaffold0567 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 126
Target Start/End: Complemental strand, 874 - 839
Alignment:
Q  91 attaaaatccttcgtccattgggagagacgaaggag 126  Q
    ||||||||||||||||||||||||||| ||||||||    
T  874 attaaaatccttcgtccattgggagaggcgaaggag 839  T

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Target: scaffold0490 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 12139 - 12090
Alignment:
Q  1 ttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac 50  Q
    ||||||||||||  | ||||||||||| ||||||||||| ||||||||||    
T  12139 ttccttcaatgtacgctcccgccaatactcttgcggtaactcaaccaaac 12090  T

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Target: scaffold0125 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 31437 - 31486
Alignment:
Q  1 ttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac 50  Q
    ||||||||||||   |||||||||||| ||||||||||| ||||||||||    
T  31437 ttccttcaatgtacattcccgccaatactcttgcggtaactcaaccaaac 31486  T

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Target: scaffold0061 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 38134 - 38085
Alignment:
Q  1 ttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac 50  Q
    ||||||||||||| | ||||||||||| ||||||||||| || |||||||    
T  38134 ttccttcaatgttcgctcccgccaatactcttgcggtaactccaccaaac 38085  T

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Target: scaffold0017 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 160645 - 160694
Alignment:
Q  1 ttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac 50  Q
    ||||||||||||| | ||||||||||| ||||||||||| || |||||||    
T  160645 ttccttcaatgttcgctcccgccaatactcttgcggtaactccaccaaac 160694  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 20381010 - 20380961
Alignment:
Q  1 ttccttcaatgtttgttcccgccaatattcttgcggtaagtcaaccaaac 50  Q
    ||||||||||||| | ||||||||||| ||||||||||| || |||||||    
T  20381010 ttccttcaatgttcgctcccgccaatactcttgcggtaactccaccaaac 20380961  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 13644669 - 13644729
Alignment:
Q  173 tcctctgccgactcaaaatgaaaatcgtaatagcccctgccaagcggtaccattttccatt 233  Q
    ||||| ||||| ||||||||||| || ||||| ||| ||||||| || |||||||||||||    
T  13644669 tcctccgccgagtcaaaatgaaagtcataataccccttgccaagaggcaccattttccatt 13644729  T

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