View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17259_high_14 (Length: 535)
Name: NF17259_high_14
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17259_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 9 - 476
Target Start/End: Complemental strand, 32649972 - 32649505
Alignment:
| Q |
9 |
gaagaaaatatgatatcgatagtgtccaacaaaagtataattaagggttgttggaaaatagccgatttaggttgctcttcaggaccaaatacactaatgg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32649972 |
gaagaaaatatgatatcgatagtgtccaacaaaagtataattaagggttgttggaaaatagccgatttaggttgttcttcaggaccaaatacactaatgg |
32649873 |
T |
|
| Q |
109 |
ccatctctaatatcttgaacatcatcaataaaactagtttgaagttaaacaatgggatatcacctgtatttcaaatttatctcaatgatctttttgaaaa |
208 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32649872 |
ccatctctaatatcttgaacatcatcaataaaactagcttgaagttaaacaatgggatatcacctgtatttcaaatttatctcaatgatctttttgaaaa |
32649773 |
T |
|
| Q |
209 |
tgatttcaataccatcttcaagttacttcctgatttctaccaacnnnnnnnnggagagaatgttggagaatgctttatatgtgcaacaccaggaaacttt |
308 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32649772 |
tgattttaataccatcttcaagttacttcctgatttctaccaacaaaaaaaaggagagaatgttggagaatgctttatatgtgcaacaccaggaaacttt |
32649673 |
T |
|
| Q |
309 |
tatggaaggctctttccaaataattacatcaacttttttcattcctcatacagtcttcattggctttctcaggttagtctccccgtggaaatcatgacaa |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32649672 |
tatggaaggctctttccaaataattacatcaacttttttcattcctcatacagtcttcattggctttctcaggttagtctccccatggaaatcatgacaa |
32649573 |
T |
|
| Q |
409 |
gaaatatgacacccatatttctatatgctaagaaatatggcacccatggaaacaaaagagaaaagaat |
476 |
Q |
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| T |
32649572 |
gaaatatgacacccatatttctatatgctaagaaatatggcacccatggaaacaaaagagaaaagaat |
32649505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 9 - 385
Target Start/End: Original strand, 32542814 - 32543190
Alignment:
| Q |
9 |
gaagaaaatatgatatcgatagtgtccaacaaaagtataattaagggttgttggaaaatagccgatttaggttgctcttcaggaccaaatacactaatgg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||| |||| ||||||||||||||||||| |||||||||||||||| ||||||| |||||||| |
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| T |
32542814 |
gaagaaaatatgatatcgatagtgtccaacaagagtttaactaagagttgttggaaaatagccgaattaggttgctcttcagaaccaaattcactaatgt |
32542913 |
T |
|
| Q |
109 |
ccatctctaatatcttgaacatcatcaataaaactagtttgaagttaaacaatgggatatcacctgtatttcaaatttatctcaatgatctttttgaaaa |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
32542914 |
ccatctctaatatcttgaacatcatcaataaaactagtttgaagttaaacaatgggatatcacctgtatttcaaatttatctcaatgatttatttgaaaa |
32543013 |
T |
|
| Q |
209 |
tgatttcaataccatcttcaagttacttcctgatttctaccaacnnnnnnnnggagagaatgttggagaatgctttatatgtgcaacaccaggaaacttt |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| || ||| |||||||||||||||||||| |
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| T |
32543014 |
tgatttcaataccatcttcaagttacttcctgatttctaccaacaaaaaaaaggagagaatgttgaagaatgtttcataggtgcaacaccaggaaacttt |
32543113 |
T |
|
| Q |
309 |
tatggaaggctctttccaaataattacatcaacttttttcattcctcatacagtcttcattggctttctcaggttag |
385 |
Q |
| |
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||||||||||||||| |||||||||||||| |||||||||||||||| |||||||| |||||||| ||||||||||| |
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|
| T |
32543114 |
tatggaaggctcttttcaaataattacatcgacttttttcattcctcttacagtctccattggctatctcaggttag |
32543190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 55 - 251
Target Start/End: Original strand, 32551559 - 32551752
Alignment:
| Q |
55 |
gttgttggaaaatagccgatttaggttgctcttcaggaccaaatacactaatggccatctctaatatcttgaacatcatcaataaaactagtttgaagtt |
154 |
Q |
| |
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||||||||||| ||| |||||||||||| ||||||||||||||| |||| ||| |||| |||||| |||| |||| |||||| ||| || | || |
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| T |
32551559 |
gttgttggaaagtagtcgatttaggttgttcttcaggaccaaatgcacttttggttgtctcaaatatcatgaaagtcattgataaaattagcttaagctt |
32551658 |
T |
|
| Q |
155 |
aaacaatgggatatcacctgtatttcaaatttatctcaatgatctttttgaaaatgatttcaataccatcttcaagttacttcctgatttctaccaa |
251 |
Q |
| |
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|||| ||| | || || | ||| |||||||| ||||||||||| | |||||||||||||||||||||||| |||||||| ||||||||| ||||| |
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|
| T |
32551659 |
aaaccatgagctaccagc---attccaaatttacctcaatgatctatatgaaaatgatttcaataccatcttgaagttactacctgatttccaccaa |
32551752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 2e-63; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 49 - 373
Target Start/End: Original strand, 27876342 - 27876672
Alignment:
| Q |
49 |
ttaagggttgttggaaaatagccgatttaggttgctcttcaggaccaaatacactaatggccatctctaatatcttgaacatcatcaataaaactagttt |
148 |
Q |
| |
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|||| ||||||| ||| |||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| | ||| ||| || |
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| T |
27876342 |
ttaatggttgttttaaagtagctgatttaggttgctcttcaggaccaaatacacttttggtcatctctaatatcttgaacatcatcattgaaattagctt |
27876441 |
T |
|
| Q |
149 |
gaagttaaacaatgggatatcacctgtatttcaaatttatctcaatgatctttttgaaaatgatttcaataccatcttcaagttacttcctgatttctac |
248 |
Q |
| |
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|||||||||| ||| || ||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
27876442 |
gaagttaaaccatgaga---cacctgtatttcaaatttatctcaatgatttatttgaaaatgatttcaatacaatcttcaagttactccctgatttctac |
27876538 |
T |
|
| Q |
249 |
---------caacnnnnnnnnggagagaatgttggagaatgctttatatgtgcaacaccaggaaacttttatggaaggctctttccaaataattacatca |
339 |
Q |
| |
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|||| ||||| |||||||||| |||||| ||| ||||||||| ||||| ||||||||| | |||||||| | |||||| |||| |
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| T |
27876539 |
aagagtatacaacaagaaaaaggagaaaatgttggagcatgcttcataaatgcaacacctggaaatttttatggacgactctttcctactaattatatca |
27876638 |
T |
|
| Q |
340 |
acttttttcattcctcatacagtcttcattggct |
373 |
Q |
| |
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|||| ||||||||||| || |||| |||||||| |
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|
| T |
27876639 |
acttctttcattcctcctattgtctccattggct |
27876672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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