View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17259_high_17 (Length: 480)
Name: NF17259_high_17
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17259_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 15 - 458
Target Start/End: Original strand, 54159791 - 54160234
Alignment:
| Q |
15 |
cagagaccaaggtgaaaggcttgagcacctttgacaaaaatgcttcaagtgatagtcctgtaattccattctcacctacaacattctcatctgcagcatc |
114 |
Q |
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| T |
54159791 |
cagagaccaaggtgaaaggcttgagcacctttgacaaaaatgcttcaagtgatagtcctgtaattccattctcacctacaacattctcatctgcagcatc |
54159890 |
T |
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| Q |
115 |
cttgtagggaggtccggtccagggactgaaattaaaaatcataaaatatcaatatggctagagtcctcactgacatcaagattcaggaaaggcaaacacg |
214 |
Q |
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| T |
54159891 |
cttgtagggaggtccggtccagggactgaaattaaaaatcataaaatatcaatatggctagagtcctcactgacatcaagattcaggaaaggcaaacacg |
54159990 |
T |
|
| Q |
215 |
tnnnnnnnttccatatcaagacttagtnnnnnnnnttaagaagcaaagttaaaagtaaataccaaatgctttagcatgtgtgtgtttgaaaaattaatta |
314 |
Q |
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| T |
54159991 |
taaaaaaattccatattaagactttgtaaaaaaaattaagaagcaaagttaaaagtaaataccaaatcctttagcatgtgtgtgtttgaaaaattaatta |
54160090 |
T |
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| Q |
315 |
cacaacataggaaatattccacatcaaactgccccattaccaaagtaagaattcaaactaatccaccatgaaatggaggataataaagtaaacaaaaagt |
414 |
Q |
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| T |
54160091 |
cacaacgtaggaaatattccacatcaaactgccccattaccaaagtaagaattcaaactaatccaccatgaaatggtggataataaagtaaacaaaaagt |
54160190 |
T |
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| Q |
415 |
gcagcaaaaaatctgtgaaaacaatctacctttccggggcagta |
458 |
Q |
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| T |
54160191 |
gtagcaaaaaatgtgagaaagcaatctacctttctggggcagta |
54160234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 368 - 461
Target Start/End: Complemental strand, 53867198 - 53867106
Alignment:
| Q |
368 |
caaactaatccaccatgaaatggaggataataaagtaaacaaaaagtgcagcaaaaaatctgtgaaaacaatctacctttccggggcagtagaa |
461 |
Q |
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| T |
53867198 |
caaattaatcaagcatgaaatggatgataataaagtgaa-aataagtatagcaaaaaatgtgagaaagcaatctacctttccggggcagtagaa |
53867106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 53867453 - 53867389
Alignment:
| Q |
99 |
tctcatctgcagcatccttgtagggaggtccggtccagggactgaaattaaaaatcataaaatat |
163 |
Q |
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| T |
53867453 |
tctcatctgcagcatcctcgtagggagctccgatccaaggactgaaattaacagtcataaaatat |
53867389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 53867500 - 53867464
Alignment:
| Q |
37 |
gagcacctttgacaaaaatgcttcaagtgatagtcct |
73 |
Q |
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| T |
53867500 |
gagcacctttgacaaaaatgcatcaagtgatagtcct |
53867464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 166
Target Start/End: Original strand, 15049521 - 15049555
Alignment:
| Q |
132 |
tccagggactgaaattaaaaatcataaaatatcaa |
166 |
Q |
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| T |
15049521 |
tccagggactgcaattaaaaatcataaaatatcaa |
15049555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 166
Target Start/End: Original strand, 17881982 - 17882016
Alignment:
| Q |
132 |
tccagggactgaaattaaaaatcataaaatatcaa |
166 |
Q |
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| T |
17881982 |
tccagggactgcaattaaaaatcataaaatatcaa |
17882016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 14774579 - 14774636
Alignment:
| Q |
16 |
agagaccaaggtgaaaggcttgagcacctttgacaaaaatgcttcaagtgatagtcct |
73 |
Q |
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| T |
14774579 |
agagacaaagataaaagacttgtgcacctctgacaaaaatgcatcaagtgatagtcct |
14774636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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