View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17259_high_20 (Length: 460)

Name: NF17259_high_20
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17259_high_20
NF17259_high_20
[»] chr7 (12 HSPs)
chr7 (126-427)||(34721257-34721565)
chr7 (20-441)||(34715687-34716114)
chr7 (16-265)||(34727740-34727989)
chr7 (16-265)||(18928737-18928986)
chr7 (212-441)||(18924027-18924259)
chr7 (204-265)||(34730898-34730959)
chr7 (17-177)||(34717711-34717871)
chr7 (16-266)||(34735496-34735746)
chr7 (364-414)||(34730749-34730799)
chr7 (364-414)||(34735348-34735398)
chr7 (20-75)||(18923835-18923890)
chr7 (364-414)||(18929085-18929135)


Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 126 - 427
Target Start/End: Complemental strand, 34721565 - 34721257
Alignment:
Q  126 tggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtcactcttttaactaagggaatttcctcctaaatgtcggggaa 225  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  34721565 tggcaagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtcactcttttaacgaagggagtttcctcctaaatgtcggggaa 34721466  T
Q  226 gtttgggaacaagacaatggccaagtttctttacaacaacagcttgttta-------tgttatcggcggcaacagaagagtaatgataaattcagttgaa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  34721465 gtttgggaacaagacaatggccaagtttctttacaacaacagcttgtttaatgtttatgttatcggcggcaacagaagagtaatgataaattcagttgaa 34721366  T
Q  319 ttgggaaaaaggatgttgcaagggatgcttccccggaggaaaatgtttcttgtgttggacgatgtgaataaactgaaccagttggatgctttgtgcataa 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34721365 ttgggaaaaaggatgttgcaagggatgcttccccggaggaaaatgtttcttgtgttggacgatgtgaataaactgaaccagttggatgctttgtgcataa 34721266  T
Q  419 gttgtagat 427  Q
    || ||||||    
T  34721265 gtcgtagat 34721257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 20 - 441
Target Start/End: Complemental strand, 34716114 - 34715687
Alignment:
Q  20 acttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttattaacctattgtacagcaaacagtcagcaggtcctctactgcttgg 119  Q
    ||||||| ||||| |||||||| || ||||| |||||||||| |||||| |||||| | ||| |  |   |  ||| |||| || |||| ||||||||||    
T  34716114 acttatttgttgcggaccatccagtgggggtggaatctcgtgtacaagaggttattcaactactaaaatcccgacaatcagaagatcctgtactgcttgg 34716015  T
Q  120 gatatgtggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtc---actcttttaactaagggaatttcctcctaaat 216  Q
    |||||| ||||  |||||||||||||||||||| ||||| ||| |   ||||||| || ||| ||   ||  |||| |   | |||  |||||| |||||    
T  34716014 gatatggggcggaggagggatcggtaaaacaacaattgccaaagcagtttataatgaaatccatcgccaccattttgaggcaaggagcttcctcttaaat 34715915  T
Q  217 gtcggggaagtttgggaacaagacaatggccaagtttctttacaacaacagcttgtttatgttatc---ggcggcaacagaagagtaatgataaattcag 313  Q
    ||||| ||||||||| ||||||| |||||| |||||||||||||| |||| ||| ||| |||||||    || ||| ||||||| ||| ||||||| |||    
T  34715914 gtcggtgaagtttggaaacaagataatggcgaagtttctttacaaaaacaacttatttctgttatcagaagcagcagcagaagaataacgataaatacag 34715815  T
Q  314 ttgaattgggaaaaaggatgttgcaagggatgcttccccggaggaaaatgtttcttgtgttggacgatgtgaataaactgaaccagttggatgctttgtg 413  Q
    ||||||  ||||||||||| ||||| | || |||||||||  |||| || || |||||| | |||||||||||||||    |||| |||| |||||||||    
T  34715814 ttgaatccggaaaaaggatattgcaggagaggcttccccgttggaagatattacttgtggttgacgatgtgaataaaaaagaccaattgggtgctttgtg 34715715  T
Q  414 cataagttgtagatggttttgtcaagga 441  Q
    ||||||  | | ||||||| ||||||||    
T  34715714 cataagacgcaaatggtttggtcaagga 34715687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 16 - 265
Target Start/End: Complemental strand, 34727989 - 34727740
Alignment:
Q  16 acagacttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttattaacctattgtacagcaaacagtcagcaggtcctctactgc 115  Q
    |||||||||||||||||||||||||| || |||||||| |||||||  |||||||||||| | ||| || |||   || | |||  ||  ||| ||||||    
T  34727989 acagacttattcgttgcagaccatccagtgggggtagattctcgtgttcaagatgttattcaactactgaacaatcaagaatcaaaagaccctttactgc 34727890  T
Q  116 ttgggatatgtggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtcactcttttaactaagggaatttcctcctaaa 215  Q
    |||| ||||| |||  |||||||||||| |||||||| ||||||||| |  ||||||||||| | ||||||  |||| |      || ||||||||||||    
T  34727889 ttggaatatggggcatgggagggatcggcaaaacaacaattgctaaagctgcttataataaaattcgtcacgattttgaggcgaagagtttcctcctaaa 34727790  T
Q  216 tgtcggggaagtttgggaacaagacaatggccaagtttctttacaacaac 265  Q
    |||| ||||||||||||||||||| |||||   ||||||| |||||||||    
T  34727789 tgtcagggaagtttgggaacaagataatggtgtagtttctctacaacaac 34727740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 16 - 265
Target Start/End: Original strand, 18928737 - 18928986
Alignment:
Q  16 acagacttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttattaacctattgtacagcaaacagtcagcaggtcctctactgc 115  Q
    ||||| |||||||||||||||||||| || |||||||| |||||||  ||||||||| || | |||||| || |  |  | |||  ||  ||| ||||||    
T  18928737 acagaattattcgttgcagaccatccagtgggggtagattctcgtgttcaagatgttgttcaactattgaactgtcacgaatcaaaagaccctttactgc 18928836  T
Q  116 ttgggatatgtggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtcactcttttaactaagggaatttcctcctaaa 215  Q
    |||| ||||| ||   |||||||||||| |||||||| ||||||||| |  ||||||||||| | ||||||  |||| |   |  || ||||||||||||    
T  18928837 ttggaatatggggtatgggagggatcggcaaaacaacaattgctaaagctgcttataataaaattcgtcacgattttgatgcaaagagtttcctcctaaa 18928936  T
Q  216 tgtcggggaagtttgggaacaagacaatggccaagtttctttacaacaac 265  Q
    |||| |||||| ||||||||| || ||||| || |||||| |||||||||    
T  18928937 tgtcagggaagattgggaacacgataatgggcaggtttctctacaacaac 18928986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 212 - 441
Target Start/End: Original strand, 18924027 - 18924259
Alignment:
Q  212 taaatgtcggggaagtttgggaacaagacaatggccaagtttctttacaacaacagcttgtttatgttatcggc--ggcaacaga-agagtaatgataaa 308  Q
    |||||||| || |||||||||||||||| |||||| ||||||||||||||||||| ||| ||| || ||||  |    ||||||| | |  || |||| |    
T  18924027 taaatgtccggcaagtttgggaacaagataatggcgaagtttctttacaacaacaacttctttctgatatctacaaaacaacagatataaaaaagataga 18924126  T
Q  309 ttcagttgaattgggaaaaaggatgttgcaagggatgcttccccggaggaaaatgtttcttgtgttggacgatgtgaataaactgaaccagttggatgct 408  Q
      |||||||||  ||||||| ||| ||||| |  |||||||| | || ||  ||||| |||||| ||||| |||||||| ||| | | || |||||||||    
T  18924127 aacagttgaatcaggaaaaatgatattgcaggaaatgcttccacagaagaggatgttacttgtggtggacaatgtgaatgaacagcatcaattggatgct 18924226  T
Q  409 ttgtgcataagttgtagatggttttgtcaagga 441  Q
    |||||||||||||| | ||||||| ||||||||    
T  18924227 ttgtgcataagttgcaaatggtttggtcaagga 18924259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 204 - 265
Target Start/End: Complemental strand, 34730959 - 34730898
Alignment:
Q  204 tttcctcctaaatgtcggggaagtttgggaacaagacaatggccaagtttctttacaacaac 265  Q
    |||||||||||||||| ||||||||||||||||||| ||||||  ||||||| |||||||||    
T  34730959 tttcctcctaaatgtcagggaagtttgggaacaagataatggcatagtttctctacaacaac 34730898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 177
Target Start/End: Complemental strand, 34717871 - 34717711
Alignment:
Q  17 cagacttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttattaacctattgtacagcaaacagtcagcaggtcctctactgct 116  Q
    |||||||||| ||||  |||||||| || | ||| |||||| ||| ||||||||||||| | ||  || ||||| |||| |||  ||   |||||||| |    
T  34717871 cagacttatttgttgtggaccatccagtcgaggttgaatcttgtgtacaagatgttatttaacttctgaacagccaacaatcaaaagactctctactgat 34717772  T
Q  117 tgggatatgtggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaa 177  Q
    ||||||||| |||  ||||||||| |  |||||||||||||||||||||  ||||||||||    
T  34717771 tgggatatgaggcatgggagggattgacaaaacaaccattgctaaatccggttataataaa 34717711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 266
Target Start/End: Complemental strand, 34735746 - 34735496
Alignment:
Q  16 acagacttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttattaacctattgtacagcaaacagtcagcaggtcctctactgc 115  Q
    ||||||||||| ||||| ||||||||||| |||||| | |||||||  |||||| | ||| | |||||| ||||  || | |||  |   ||| ||||||    
T  34735746 acagacttatttgttgcggaccatccggtgggggtaaagtctcgtgttcaagatatcattcaactattgaacagtcaagaatcaaaatcccctttactgc 34735647  T
Q  116 ttgggatatgtggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtcactcttttaactaagggaatttcctcctaaa 215  Q
    | ||  |||| |||  |||||||||||| |||||||| ||||||||| |  ||||||||||| | | ||||  |||| |      || |||||||| |||    
T  34735646 tcggagtatggggcatgggagggatcggcaaaacaacaattgctaaagctgcttataataaaattcatcacgattttgaggcgaagagtttcctcccaaa 34735547  T
Q  216 tgtcggggaagtttgggaacaagacaatggccaagtttctttacaacaaca 266  Q
    |||| ||||||| ||||||||||| ||||||  ||||||| ||||||||||    
T  34735546 tgtcagggaagtctgggaacaagataatggcgtagtttctctacaacaaca 34735496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 414
Target Start/End: Complemental strand, 34730799 - 34730749
Alignment:
Q  364 tttcttgtgttggacgatgtgaataaactgaaccagttggatgctttgtgc 414  Q
    ||||||||| |||||||||||||||||||| |||| ||| |||||||||||    
T  34730799 tttcttgtgctggacgatgtgaataaactggaccaattgaatgctttgtgc 34730749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 414
Target Start/End: Complemental strand, 34735398 - 34735348
Alignment:
Q  364 tttcttgtgttggacgatgtgaataaactgaaccagttggatgctttgtgc 414  Q
    ||||||||| |||||||||||||||||||| |||| ||| |||||||||||    
T  34735398 tttcttgtgctggacgatgtgaataaactggaccaattgaatgctttgtgc 34735348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 18923835 - 18923890
Alignment:
Q  20 acttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttatt 75  Q
    ||||||||||||| |||||||| || ||||| |||||||||| |||||| ||||||    
T  18923835 acttattcgttgcggaccatcctgtgggggttgaatctcgtgtacaagaggttatt 18923890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 414
Target Start/End: Original strand, 18929085 - 18929135
Alignment:
Q  364 tttcttgtgttggacgatgtgaataaactgaaccagttggatgctttgtgc 414  Q
    |||||||||||||||||||||||||||  | |||| ||| |||||||||||    
T  18929085 tttcttgtgttggacgatgtgaataaagaggaccaattgaatgctttgtgc 18929135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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