View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17259_high_3 (Length: 686)
Name: NF17259_high_3
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17259_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 594; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 6 - 668
Target Start/End: Original strand, 37972560 - 37973222
Alignment:
| Q |
6 |
agcagcacagaggcacttcactttggtagtccttgggaaatgacctcgaaattcatcgcagtgtaaaatagtagcaagaccaccagctgagcatccagaa |
105 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37972560 |
agcatcactgaggcacttcactttggtagtccttgggaaatgacctcgaaattcatcgcagtgtaaaatagtagcaagaccaccagctgagcatccagaa |
37972659 |
T |
|
| Q |
106 |
agaagagcctgaaggaaacaaagttgtaaataacacgagaagaaagattacttaagcagcaatgagcactcgcgcatgtatgtgtacaacctgcttggca |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
37972660 |
agaagagcctgaaggaaacaaagttgtaaataacacgagaagaaagattacttaagcagcaatgtgcatgcgcgcatgtatgtgtacaacctgcttggca |
37972759 |
T |
|
| Q |
206 |
aaacgcattccttttgacatcaaatcctccactgcagccaaccaaatgcgctgtcctctgaattgcaactgcgcagcctatgtcaaccgataatattcag |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37972760 |
aaacgcattccttttgacatcaaatcctccactgcagccaaccaaatgcgctgtcctctgaattgcaactgcgcagcctatgtcaaccgataatattcag |
37972859 |
T |
|
| Q |
306 |
aaattagtactttgaaataaccctacattacatagatcgacttaagtcatgtatgtgcattaagtgtcactagtgttattttatcttccttatgcatcat |
405 |
Q |
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| T |
37972860 |
aaattagtactttgaaataaccctacattacatagatcgactaaagtcatgtatgtgcattaagtgtcactagtgttattttctcttccttatgcattat |
37972959 |
T |
|
| Q |
406 |
tcatacagtttttcacactgaaattgtgagcacatgtgcctacttttcattcatacaaacataatgtatgatgtatctactaacaacagctaacactaac |
505 |
Q |
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| T |
37972960 |
tcatacagtttttcacactgaaattgtgagcacatatgcctacttttcattcatacagacataatgtatgatgtatctactatcaacagctaacactaac |
37973059 |
T |
|
| Q |
506 |
agaggtgtgacctatgaaaaaatgaataaaattggctatcatttcagttttgaagatttaccttatcttcactatccccggtaaaagaggcaccatcaca |
605 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37973060 |
agaggtgtaacctatgaaaaaatgaataaaattggctatcatttcagttttgaagatttaccttatcttcactatccccggtaaaagaggcaccatcaca |
37973159 |
T |
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| Q |
606 |
gtaacgaattttcactctgttccagttnnnnnnntctgcaatcataaggaacaatatgagcca |
668 |
Q |
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| T |
37973160 |
gtaacgaattttcactctgttccagttaaaaaaatctgcaatcataaggaacaatatgagcca |
37973222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 45667727 - 45667633
Alignment:
| Q |
19 |
cacttcactttggtagtccttgggaaatgacctcgaaattcatcgcagtgtaaaatagtagcaagaccaccagctgagcatccagaaagaagagc |
113 |
Q |
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||||||||||| ||||||||||| || |||||||||||||||||||||||| |||||| || || |||||||| || ||||| ||||||||||| |
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| T |
45667727 |
cacttcactttagtagtccttggaaagagacctcgaaattcatcgcagtgtataatagttgctaggccaccagcggaacatccggaaagaagagc |
45667633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 45667625 - 45667556
Alignment:
| Q |
203 |
gcaaaacgcattccttttgacatcaaatcctccactgcagccaaccaaatgcgctgtcctctgaattgca |
272 |
Q |
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|||||| ||||||| ||||| |||||||| |||| |||||| |||||| ||||||||||| ||||||| |
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| T |
45667625 |
gcaaaatgcattccctttgatatcaaatcttccattgcagctgcccaaatacgctgtcctctaaattgca |
45667556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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