View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17259_high_30 (Length: 369)
Name: NF17259_high_30
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17259_high_30 |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 65 - 361
Target Start/End: Complemental strand, 34216244 - 34215948
Alignment:
| Q |
65 |
ttggatttggttactgcagtagcatacgatgacgtgcattcaaatgtagtggagcaaacactttcaggattctcaggacacgagcgttctagagacttct |
164 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34216244 |
ttggatttggttactgcagtagcatacgatgacgtgcattcaaatgtagtggagcaaacactttcaggattctcaggacacgagcgttctagagacttct |
34216145 |
T |
|
| Q |
165 |
gtagctgctgttccgcttaccttttcaatagagcacgttgtcgtgcatgagaacgccgagttagctctctccgcttctgttaggtagatgagtccctcgc |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34216144 |
gtagctgctgttccgcttaccttttcaatagagcacgttgacgtgcatgagaatgccgagttagctctctccgcttctgttaggtagatgagtccctcgc |
34216045 |
T |
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| Q |
265 |
tggcccagatcaatgaatcgcaatctaaggtgcatacaggttcgccccgcctgcactcacaagccaaagtttctgttgtttcggcctttgcttcttc |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
34216044 |
tggcccagatcaatgaatcgcaatctaaggtgcatacaggttcgccccgcctgcactcacaagccaaaatttctgttgtttcggccattgcttcttc |
34215948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 34216213 - 34216281
Alignment:
| Q |
1 |
tcatcatatgctactgcagtaaccaagtccaacacggggctagtgagctgaggcaaccttccctttgga |
69 |
Q |
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||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
34216213 |
tcatcgtatgctactgcagtaaccaaatccaacacggggctagtgagctgaggcaaccttccctttgga |
34216281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 271
Target Start/End: Complemental strand, 34216467 - 34216354
Alignment:
| Q |
158 |
gacttctgtagctgctgttccgcttaccttttcaatagagcacgttgtcgtgcatgagaacgccgagttagctctctccgcttctgttaggtagatgagt |
257 |
Q |
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||||||||| ||||| |||| ||| ||| |||| | |||||||| ||||||||||||| | ||||| || | || |||||||||| | |||||||| |
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| T |
34216467 |
gacttctgtcgctgccgttcggctcccctcttcagttgagcacgtcaacgtgcatgagaactctgagtttactgtttctgcttctgttaaggagatgagt |
34216368 |
T |
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| Q |
258 |
ccctcgctggccca |
271 |
Q |
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|||||||| ||||| |
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| T |
34216367 |
ccctcgcttgccca |
34216354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 146 - 361
Target Start/End: Original strand, 11212583 - 11212793
Alignment:
| Q |
146 |
gagcgttctagagacttctgtagctgctgttccgcttaccttttcaatagagcacgttgtcgtgcatgagaacgccgagttagctctctccgcttctgtt |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| | ||||| ||||| || ||||||||||| ||||||||||||||| |||| |
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| T |
11212583 |
gagcgttctagagacttctgtagctgctgttccgcttatctttttagtagagtgcgttgacgcacatgagaacgc-----tagctctctccgcttatgtt |
11212677 |
T |
|
| Q |
246 |
aggtagatgagtccctcgctggcccagatcaatgaatcgcaatctaaggtgcatacaggttcgccccgcctgcactcacaagccaaagtttctgttgttt |
345 |
Q |
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||| ||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
11212678 |
agggagatgagtccctcgccaacccagatcaatgaatctcaatctgaggtgcatacaggttcgccccacctgcactcacaagccaaagtttctgctgttt |
11212777 |
T |
|
| Q |
346 |
cggcctttgcttcttc |
361 |
Q |
| |
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||||| ||||| |||| |
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| T |
11212778 |
cggccattgctacttc |
11212793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 250 - 361
Target Start/End: Original strand, 18485088 - 18485199
Alignment:
| Q |
250 |
agatgagtccctcgctggcccagatcaatgaatcgcaatctaaggtgcatacaggttcgccccgcctgcactcacaagccaaagtttctgttgtttcggc |
349 |
Q |
| |
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||||||| |||||||| |||||| |||||||||| |||||| ||||||||||| |||| |||| ||||||||||||||||||| |||||| |||| |||| |
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| T |
18485088 |
agatgagcccctcgcttgcccagctcaatgaatcacaatctgaggtgcatacatgttcaccccacctgcactcacaagccaaaatttctgctgttacggc |
18485187 |
T |
|
| Q |
350 |
ctttgcttcttc |
361 |
Q |
| |
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| ||||| |||| |
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| T |
18485188 |
cattgctacttc |
18485199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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