View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17259_high_34 (Length: 350)
Name: NF17259_high_34
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17259_high_34 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 337
Target Start/End: Complemental strand, 42003198 - 42002880
Alignment:
| Q |
19 |
gagacagtccaaatcacaatgaattatatctcatgattcaaattcaatcgttaatgtggcaacaaaaaatggcccggttcttttatagtgctgaaaaaga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42003198 |
gagacagtccaaatcacaatgaattatatctcatgattcaaattcaatcgttaatgcggcaacaaaaaatggaccggttcttttatagtgctgaaaaaga |
42003099 |
T |
|
| Q |
119 |
gcatgtgccttttggccaaagattgatgctggcattgttgttctctagatatacaaatggggggacataaacaacttcagtaatctggctctgacagtga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42003098 |
gcatgtgccttttggccaaagattgatgctggcattgttgttctctagatatacaaatggggggacataaacaacttcagtaatctggctctgacagtga |
42002999 |
T |
|
| Q |
219 |
cgaactgcaaagctcacattgtttctgcacatttggcttgttccttctggaagaattaagtcaatgcaatcataggactttcaatcaaatttatggtgca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
42002998 |
cgaactgcaaagctcacattgtttctgcacatttggcttgttccttctggaagaattaagtcaatgcaatcataggacttgctttcaaatttatggtgca |
42002899 |
T |
|
| Q |
319 |
aaattccttttcttccctt |
337 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
42002898 |
aaattccttttcttccctt |
42002880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University