View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17259_high_35 (Length: 325)
Name: NF17259_high_35
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17259_high_35 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 60 - 310
Target Start/End: Complemental strand, 40802051 - 40801804
Alignment:
| Q |
60 |
tttagatctcgagagagtaattttttcaacttagatctaactctctccaccattgttgcacgtacca-tat-atacagctgttatagagaatccaagtcc |
157 |
Q |
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| T |
40802051 |
tttagatcttgagagagtaattttctcaacttagatctaactctctccacc-ttgttgcacgtaccaataccatacagctgttatagagaatccaagtcc |
40801953 |
T |
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| Q |
158 |
attatattgatgttaaaaatgagagagagatcgataagttatatatattagagcaaagccagtgatcttaccctttgatcggcgtcggggcagccaacaa |
257 |
Q |
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| T |
40801952 |
attatattgatgttaaaaatgagagaga--tcgataagttatatatattagagcaaagctagtgatcttaccctttgatcggcgtcggggcagccaacaa |
40801855 |
T |
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| Q |
258 |
gactgcttacattacattcgtgtacaaacagcttcaatgaagtttatcataat |
310 |
Q |
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| T |
40801854 |
gactggttacattacattc--gtacaaacagcttcaatgaagtttatcataat |
40801804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 40802110 - 40802081
Alignment:
| Q |
1 |
acattatacatacacaaactataggctgag |
30 |
Q |
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| T |
40802110 |
acattatacatacacaaactataggctgag |
40802081 |
T |
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