View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17259_high_38 (Length: 299)
Name: NF17259_high_38
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17259_high_38 |
 | |
|
| [»] scaffold0012 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0012 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 151072 - 151127
Alignment:
| Q |
20 |
ttaaaacataaatttactaacttcaatgaaatagacatattagctcatgttccaaa |
75 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
151072 |
ttaaaacataaatttactaacttcaatgaaatagacatatttgctcatgttccaaa |
151127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 285
Target Start/End: Original strand, 151626 - 151663
Alignment:
| Q |
248 |
gttcgcaatctttttcaatatgttgtttaatatgaaac |
285 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
151626 |
gttcgcaatctttttcaatattgtgtttaatatgaaac |
151663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 34506379 - 34506424
Alignment:
| Q |
239 |
aagaaaaatgttcgcaatctttttcaatatgttgtttaatatgaaa |
284 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34506379 |
aagaaaaaagttcgcaatctttttcaatatgttgtttaatatgaaa |
34506424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 27715190 - 27715239
Alignment:
| Q |
78 |
ctacaacttgattctctgaacaaaatgcaaggactgatgtaacactaata |
127 |
Q |
| |
|
|||| ||| |||||||| || ||||||||||||||||||||| ||||||| |
|
|
| T |
27715190 |
ctaccactcgattctctaaataaaatgcaaggactgatgtaatactaata |
27715239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University