View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17259_high_40 (Length: 288)
Name: NF17259_high_40
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17259_high_40 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 84 - 278
Target Start/End: Original strand, 28583756 - 28583950
Alignment:
| Q |
84 |
caagaacatcatagtgaaattgagagcatccactatcaaggttcaatataacattttcttctttatataattccttcctatactctccttttctaaattt |
183 |
Q |
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| T |
28583756 |
caagaacatcatagtgaaattgagagcatccactatcaaggttcaagataacattttcttctttaaataattccttcctatactctcctattctaaattc |
28583855 |
T |
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| Q |
184 |
tctctgtccatcaccaacatttactaaaccagtagtagttttatctaaggatacagctggtacagaaatcatgatatatttcatctttctttctt |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28583856 |
tctctgtccatcaccaacatttactaaaccagtagtagtttcatctaaggatacagctggtgcagaaatcatgatatatttcatctttctttctt |
28583950 |
T |
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