View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17259_high_51 (Length: 237)
Name: NF17259_high_51
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17259_high_51 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 3 - 220
Target Start/End: Complemental strand, 8566342 - 8566125
Alignment:
| Q |
3 |
ctacattttatagtcaactttaattacgtctccaaattattaatgatgtgttagagcatatgtaaacaagtcactaatttaatatgtccacatgttttct |
102 |
Q |
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| T |
8566342 |
ctacattttatagtcaactttaattatgtctctaaattattaatgatgtgttagagcatatgtagacaagtcactaatttaatatgtccacatgttttct |
8566243 |
T |
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| Q |
103 |
gtcacaccattaataatttagacacatgatcaaaattgacctttctatggagtgtgaatcaaaagttaaaaaagattgaaataggagatgaaaaaactaa |
202 |
Q |
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| T |
8566242 |
gtcacaccattaataatttagacacatgatcaaaattgacctttctatggagtgtgaatcaaaagttaaaaaagattgaaataggagatgaaaaagctaa |
8566143 |
T |
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| Q |
203 |
actcttatatgggaatca |
220 |
Q |
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| T |
8566142 |
actcttatatgggaatca |
8566125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 62 - 140
Target Start/End: Original strand, 8612765 - 8612843
Alignment:
| Q |
62 |
atgtaaacaagtcactaatttaatatgtccacatgttttctgtcacaccattaataatttagacacatgatcaaaattg |
140 |
Q |
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| T |
8612765 |
atgtagacaagtcactaatttaatatgtccacatgttctctatcacatcattaataacttaaacacgtaatcaaaattg |
8612843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 8645888 - 8645816
Alignment:
| Q |
68 |
acaagtcactaatttaatatgtccacatgttttctgtcacaccattaataatttagacacatgatcaaaattg |
140 |
Q |
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| T |
8645888 |
acaagtcactaattcaatatgtccacatgttctctatcatatcattaataacttaaacacgtaatcaaaattg |
8645816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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