View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17259_high_59 (Length: 214)
Name: NF17259_high_59
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17259_high_59 |
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Alignment Details
Target: chr5 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 6293749 - 6293645
Alignment:
| Q |
17 |
atatattctttcaaaccctcggtatcaacatcccacggaatccccaaaacctaatatccaatttcataaacacaaatcaaaacatatcaacattttaatc |
116 |
Q |
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| T |
6293749 |
atatattctttcaaaccctcggtatcaacatcccacggaatccccaaaacctaatatccaatttcataaacacaaatcaaaacatatcaacattttaatc |
6293650 |
T |
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| Q |
117 |
attgc |
121 |
Q |
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||||| |
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| T |
6293649 |
attgc |
6293645 |
T |
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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 6293599 - 6293563
Alignment:
| Q |
167 |
tgaatattcataactaaccacaagctttctctgctcc |
203 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
6293599 |
tgaatattcataactaaccacaagctttctctgctcc |
6293563 |
T |
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