View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17259_high_6 (Length: 620)
Name: NF17259_high_6
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17259_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 487; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 36 - 604
Target Start/End: Complemental strand, 6310520 - 6309932
Alignment:
| Q |
36 |
tcttaatcgaattctatttgtatgtgtttccgtacgttagtagcacaaatgttttcaaccgttttctgctgaacctctcagtcacgccac---------- |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6310520 |
tcttaatcgaattctatttgtatgtgtttccgtacgttagtagcacaaatgttttcaaccgttttctgctgaacctctcagtcacgccactccccgcaac |
6310421 |
T |
|
| Q |
126 |
---------agatagccagcggttacaatccattctcctcactcctttaagtaacattattattcaaacctctctctatggttattaaactccaaatcaa |
216 |
Q |
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| T |
6310420 |
attagctacagatagccagcggttacaatccattctcctcactcctttaagtaacattatt---caaacctctctctatggttattaaactccaaatcaa |
6310324 |
T |
|
| Q |
217 |
caacaacactgttttaagagtctctgttaacgagggaagcagcgcgaacattctttactggtccgcattcttgaagatgggactggaagagtcaatgctg |
316 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6310323 |
caacaacactgttttaagagtctctgttaaccagggaagcagcgcgaacattctttactggtccgcattcttgaagatgggactggaagagtcaatgctg |
6310224 |
T |
|
| Q |
317 |
aaaccatttgaaggatttctgaagggtacttttggcgatggtgtgccggtcaaaggatacgttgatttggacacaacattcggtaaaggagggaatgtga |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6310223 |
aaaccatttgaaggatttctgaagggtacttttggcgatggtgtgccggtcaaaggatacgttgatttggacacaacattcggtaaaggagggaatgtga |
6310124 |
T |
|
| Q |
417 |
agatgattaaggtaaggtactttgtc----attgattcttggtctgtttataatgttgttattggcttgcctgctgttgctgatttgggagcggtgatct |
512 |
Q |
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| T |
6310123 |
agatgattaaggtaaggtactttgtcattaattgattcttggtctgtttataatgttgttattggcttgcctgctgttgctgatttgggagcggtgatct |
6310024 |
T |
|
| Q |
513 |
caacgttacacctcacaatgaaatatcctattggagatggaatggtcggagttgtcaaggcagacctcgagatggagaaaaagtgttatgag |
604 |
Q |
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| T |
6310023 |
caacgttacacctcacaatgaaatatcctattggagatggaatggtcggacttgtcaaggcagacctcgagatggcgaaaaagtgttatgag |
6309932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 262 - 577
Target Start/End: Complemental strand, 6323935 - 6323636
Alignment:
| Q |
262 |
gaacattctttactggtccgcattcttgaagatgggactggaagagtcaatgctgaaaccatttgaaggatttctgaagggtacttttggcgatggtgtg |
361 |
Q |
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||||||||| ||||||||||| |||||||||||||||||| |||| |||||||||||||||| |||| || ||| |||||| | | || ||||||| |
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| T |
6323935 |
gaacattctctactggtccgcgttcttgaagatgggactgttagagacaatgctgaaaccattagaagcatatctcaagggtgttatcggaaatggtgta |
6323836 |
T |
|
| Q |
362 |
ccggtcaaaggatacgttgatttggacacaacattcggtaaaggagggaatgtgaagatgattaaggtaaggtactttgtcattgattcttggtctgttt |
461 |
Q |
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|| || |||||||| |||||||||||||||||||||| ||| ||||||| | || ||||| ||||| |||||||| |||| ||| |
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| T |
6323835 |
ccagtgaaaggatatattgatttggacacaacattcggaaaatgagggaa-gccaaaatgatcaaggtgaggtacttcgtca---------------ttt |
6323752 |
T |
|
| Q |
462 |
ataatgttgttattggcttgcctgctgttgctgatttgggagcggtgatctcaacgttacacctcacaatgaaatatcctattggagatggaatggtcgg |
561 |
Q |
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||||||||||||||||| || | |||||||||||| ||| ||||||||||| |||||||||| |||||||||||| ||||||||||||||||| |
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| T |
6323751 |
ataatgttgttattggcaggctgacagttgctgatttgagagatgtgatctcaaccctacacctcaccatgaaatatcctgccggagatggaatggtcgg |
6323652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 264 - 405
Target Start/End: Complemental strand, 6327294 - 6327153
Alignment:
| Q |
264 |
acattctttactggtccgcattcttgaagatgggactggaagagtcaatgctgaaaccatttgaaggatttctgaagggtacttttggcgatggtgtgcc |
363 |
Q |
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|||||||||||||||||||||||||||||||| ||| |||| |||||||| ||||||| | |||||||||| |||||||||||||| | ||| | || |
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| T |
6327294 |
acattctttactggtccgcattcttgaagatgaaactacaagaatcaatgctcaaaccatgtcaaggatttctcaagggtacttttggaaaaggtttacc |
6327195 |
T |
|
| Q |
364 |
ggtcaaaggatacgttgatttggacacaacattcggtaaagg |
405 |
Q |
| |
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|| ||||||||| |||||||||||||||| || |||||||| |
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| T |
6327194 |
agtgaaaggatacattgatttggacacaacttttggtaaagg |
6327153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 264 - 405
Target Start/End: Complemental strand, 6318052 - 6317911
Alignment:
| Q |
264 |
acattctttactggtccgcattcttgaagatgggactggaagagtcaatgctgaaaccatttgaaggatttctgaagggtacttttggcgatggtgtgcc |
363 |
Q |
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||||||| ||||||||||||||||||||||||||||| ||| |||||||| ||||||| | ||| |||||| ||| ||||||||| | ||||| || |
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| T |
6318052 |
acattctctactggtccgcattcttgaagatgggactttcagaatcaatgctcaaaccatgtcaagcatttctcaagtatacttttggaaaaggtgtacc |
6317953 |
T |
|
| Q |
364 |
ggtcaaaggatacgttgatttggacacaacattcggtaaagg |
405 |
Q |
| |
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|||||||||||| |||||||||||||||| || |||||||| |
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| T |
6317952 |
agtcaaaggatacattgatttggacacaacttttggtaaagg |
6317911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 534 - 587
Target Start/End: Complemental strand, 6327015 - 6326962
Alignment:
| Q |
534 |
aatatcctattggagatggaatggtcggagttgtcaaggcagacctcgagatgg |
587 |
Q |
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|||||||| |||||||||||| |||||| |||||| |||||||||||||||||| |
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| T |
6327015 |
aatatcctgttggagatggaaaggtcggtgttgtcgaggcagacctcgagatgg |
6326962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 524 - 600
Target Start/End: Complemental strand, 6330015 - 6329939
Alignment:
| Q |
524 |
ctcacaatgaaatatcctattggagatggaatggtcggagttgtcaaggcagacctcgagatggagaaaaagtgtta |
600 |
Q |
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||||| |||||||||||| |||||||||||| ||| |||||||| | |||||| || ||||||| || |||||||| |
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| T |
6330015 |
ctcaccatgaaatatcctcttggagatggaaaggttggagttgttagggcagatcttgagatggctaagaagtgtta |
6329939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 401 - 477
Target Start/End: Complemental strand, 6330140 - 6330064
Alignment:
| Q |
401 |
aaaggagggaatgtgaagatgattaaggtaaggtactttgtcattgattcttggtctgtttataatgttgttattgg |
477 |
Q |
| |
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||||| ||||||| |||||||| ||||| |||||||| ||| ||||||| ||| ||||||||||||||||||| |
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| T |
6330140 |
aaaggtgggaatgccaagatgatcaaggtgaggtacttggtcgttgattcacactctatttataatgttgttattgg |
6330064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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