View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17259_high_9 (Length: 576)
Name: NF17259_high_9
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17259_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 115 - 560
Target Start/End: Original strand, 13982770 - 13983212
Alignment:
| Q |
115 |
agtagagtttgcttccctttatctttttacatctttttccttcnnnnnnngaaaatcttgttgcataattctttattgattaaacttttgcatcagacct |
214 |
Q |
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| T |
13982770 |
agtagagtttgcttccctctatctttttacatctttttccttcaaaaaaagaaaatcttgttgcataattctttattgattaaacttttgcatcagacct |
13982869 |
T |
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| Q |
215 |
tacttgtcaaaatattatgataactaaaattatcaaccacaatttaatggttcgaatttttcatcaacttagacactccactgaaatcagaaaaacatca |
314 |
Q |
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| T |
13982870 |
tacttgtcaaaatattatgataactaaa-ttctcaaaaccaatttaatggttcgaatttttcatcaacttagacactccactgaaatcagaaaaacatca |
13982968 |
T |
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| Q |
315 |
tattacnnnnnnnntgaagacatcaaaactaacgctctgctatagccaatactctcttgagcttgaaacaaacttgtttaaagttcaactttctaatttg |
414 |
Q |
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| T |
13982969 |
tgttacaaaaaaaatgaagacatcaaaactaacgctctgcta--gccaatactctcttgagcttgaaacaaacttgtttaaagttcaactttctaatttg |
13983066 |
T |
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| Q |
415 |
aagaagttctattaaaaatcaagaaaacaagtgatgtataattaaatttataaacaatagatataaccaatatctcatttaagacctaaaagtaaaacaa |
514 |
Q |
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| T |
13983067 |
aagaagttctattaaaaatcaagaaaacaagtgatgtataattaaatttataaacaatagatataaccaagatctcatttaagacctaaaagtaaaacaa |
13983166 |
T |
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| Q |
515 |
cacataggagaaatgaaagagggctacgagagaagaaccaatgaag |
560 |
Q |
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| T |
13983167 |
cacataggagaaatgaaagagagctacgagagaagaaccaatgaag |
13983212 |
T |
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