View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17259_low_11 (Length: 565)
Name: NF17259_low_11
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17259_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 24 - 550
Target Start/End: Original strand, 27423310 - 27423836
Alignment:
| Q |
24 |
tctcagttctcattactctgttgatgtattggtcttattctcattatttaatagtcatagtatctatttctcaatgaattagcaatgtcattcacaactt |
123 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
27423310 |
tctcagttctcattactctgttgatgtattggccttattctcattatttaatagtcatagtatctattcctcaatgaattagcaatgccattcacaactt |
27423409 |
T |
|
| Q |
124 |
ttttatattttggaaatacacaatatgagaaatggtataaaactatatttgaatttaattttggaaactttcaagcaattaggcatgaatgattaagcaa |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
27423410 |
ttttatattttggaaatacacaatatgagaaatggtataaaactatatttgaatttaattttggaaactttcaagcaattaggtacgaatgattaagcaa |
27423509 |
T |
|
| Q |
224 |
ttaagtgttacaccccgcaggtcctccaaattcaactgataatccaacatctttgtcctcaatgtattcagcaccaaagcatacaaatttggaagtgtaa |
323 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27423510 |
ttaagcgttacaccccgcaggtcctccaaattcaactgataatccaacatctttgtcctcaatgtattcagcaccaaagcatacaaatttggaagtgtaa |
27423609 |
T |
|
| Q |
324 |
atatgtccatcgtctttttcaagtggttgattttgtccaaaatcattaacaaattcaggattcttaaaataagacccatgattcgaaatgcccatcggaa |
423 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
27423610 |
atatgtccatcgtctttttcaagtggttgattttgtccaaaatcattaacaaattcaggattcttaaaataagacccatgatttgaaatgcccatgggaa |
27423709 |
T |
|
| Q |
424 |
attctccgcatcccattgaaggactaggggtacccaaaggagttgttgttatcccctcccacgccacttcatcaacgtatgtcatgttcgagaataaaga |
523 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27423710 |
attctccgcatcccattgaaggactacgggtacccaaaggagttgttgttatagccatccacgccacttcatcaacgtatgtcatgttcgagaataaaga |
27423809 |
T |
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| Q |
524 |
tgccggaaaatatccaatttccttctt |
550 |
Q |
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||||||||||||||||||||||||||| |
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| T |
27423810 |
tgccggaaaatatccaatttccttctt |
27423836 |
T |
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