View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17259_low_12 (Length: 558)

Name: NF17259_low_12
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17259_low_12
NF17259_low_12
[»] chr2 (17 HSPs)
chr2 (165-350)||(29641044-29641229)
chr2 (13-135)||(29641252-29641374)
chr2 (363-475)||(29640638-29640750)
chr2 (483-558)||(44650374-44650449)
chr2 (483-558)||(6672869-6672944)
chr2 (483-558)||(10745308-10745383)
chr2 (483-558)||(25987738-25987813)
chr2 (483-558)||(40156021-40156096)
chr2 (484-558)||(36836405-36836479)
chr2 (491-556)||(21637886-21637951)
chr2 (489-556)||(17136374-17136441)
chr2 (495-558)||(45137046-45137109)
chr2 (489-556)||(2754129-2754196)
chr2 (489-555)||(7860225-7860291)
chr2 (489-558)||(36380208-36380277)
chr2 (483-558)||(3200862-3200937)
chr2 (491-556)||(30372758-30372823)
[»] scaffold0021 (1 HSPs)
scaffold0021 (483-558)||(107767-107842)
[»] chr7 (13 HSPs)
chr7 (483-558)||(41151153-41151228)
chr7 (483-558)||(34721815-34721890)
chr7 (483-558)||(16059429-16059504)
chr7 (483-558)||(35109672-35109747)
chr7 (483-558)||(38265313-38265388)
chr7 (489-556)||(11216756-11216823)
chr7 (483-558)||(18117020-18117095)
chr7 (483-558)||(38405230-38405305)
chr7 (483-556)||(21577176-21577249)
chr7 (491-558)||(45278441-45278508)
chr7 (496-558)||(12472115-12472177)
chr7 (520-558)||(37095286-37095324)
chr7 (483-556)||(48176380-48176453)
[»] chr8 (10 HSPs)
chr8 (483-558)||(19723292-19723367)
chr8 (489-556)||(11403988-11404055)
chr8 (483-558)||(32296715-32296790)
chr8 (491-554)||(4840129-4840192)
chr8 (489-556)||(24475074-24475141)
chr8 (489-556)||(27881066-27881133)
chr8 (489-556)||(28021247-28021314)
chr8 (491-556)||(41553274-41553339)
chr8 (483-525)||(6097545-6097587)
chr8 (482-552)||(29767168-29767238)
[»] chr4 (10 HSPs)
chr4 (483-558)||(36192522-36192597)
chr4 (483-556)||(8740429-8740502)
chr4 (489-556)||(46494476-46494543)
chr4 (489-558)||(32139151-32139220)
chr4 (483-558)||(39863854-39863929)
chr4 (483-558)||(50905729-50905804)
chr4 (483-558)||(51066474-51066549)
chr4 (483-558)||(2294786-2294861)
chr4 (489-552)||(51714047-51714110)
chr4 (516-556)||(22423390-22423430)
[»] chr3 (11 HSPs)
chr3 (483-558)||(7417779-7417854)
chr3 (483-558)||(8400836-8400911)
chr3 (483-558)||(22855868-22855943)
chr3 (496-556)||(43334132-43334192)
chr3 (489-558)||(50726073-50726142)
chr3 (489-558)||(50786706-50786775)
chr3 (493-558)||(50823689-50823754)
chr3 (493-558)||(50852106-50852171)
chr3 (494-558)||(34824548-34824612)
chr3 (483-556)||(35198746-35198819)
chr3 (489-556)||(48078019-48078086)
[»] chr1 (10 HSPs)
chr1 (483-556)||(4573360-4573433)
chr1 (493-558)||(30054518-30054583)
chr1 (483-558)||(12025162-12025237)
chr1 (483-558)||(30370136-30370211)
chr1 (489-558)||(30850916-30850985)
chr1 (483-558)||(20014439-20014514)
chr1 (489-556)||(21090102-21090169)
chr1 (483-558)||(33763330-33763405)
chr1 (489-556)||(45323993-45324060)
chr1 (483-548)||(15034436-15034501)
[»] chr5 (2 HSPs)
chr5 (489-556)||(17064310-17064377)
chr5 (493-554)||(35237103-35237164)
[»] chr6 (5 HSPs)
chr6 (491-556)||(14496341-14496406)
chr6 (496-557)||(14505600-14505661)
chr6 (483-556)||(35163828-35163901)
chr6 (489-556)||(2711812-2711879)
chr6 (483-558)||(19686903-19686978)


Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 165 - 350
Target Start/End: Complemental strand, 29641229 - 29641044
Alignment:
Q  165 tgtgtccatatattggtaccactcttttgagataatgttttagtacatataatcatgtaattgctaaatgttactgattgcaattcaaccacatatgtcg 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29641229 tgtgtccatatattggtaccactcttttgagataatgttttagtacatataatcatgtaattgctaaatgttactgattgcaattcaaccacatatgtcg 29641130  T
Q  265 aatttgttcgatgttacatcctccactgactttctgattaaattcccatcttctttcattttccatcttacaaatatgtcttgcct 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29641129 aatttgttcgatgttacatcctccactgactttctgattaaattcccatcttctttcattttccatcttacaaatatgtcttgcct 29641044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 13 - 135
Target Start/End: Complemental strand, 29641374 - 29641252
Alignment:
Q  13 aatataaaagaattttacaccgtcatcaactatgtttatgtggcattgtttgattttgcgtcttattgtggtattggtttttaacttatgggatattgtt 112  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||    
T  29641374 aatataaaagaattttacaccatcatcaactatgtttatgtgacattgtttgattttacgtcttattgtggtattggtttttaacttacgggttattgtt 29641275  T
Q  113 tatgtatgaattgtctacctcaa 135  Q
    |||||||||||||||||||||||    
T  29641274 tatgtatgaattgtctacctcaa 29641252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 363 - 475
Target Start/End: Complemental strand, 29640750 - 29640638
Alignment:
Q  363 ttgcttatacaattttagaaatctaagaacccgaaattgttataaacaatttattaaaaatttactttatatcaaagtgtagattaatttttgtgtgaaa 462  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||    
T  29640750 ttgcttatacaattttagaaatctaagaatccgaaatttttataaacaatttattaaaaatttactttatatcaaagtgtagagtaatttttgtgttaaa 29640651  T
Q  463 caataagcatccg 475  Q
    |||||||||||||    
T  29640650 caataagcatccg 29640638  T

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Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 483 - 558
Target Start/End: Original strand, 44650374 - 44650449
Alignment:
Q  483 aaaaacacaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    ||||| ||||||||||||| ||||||||||||| ||||||| | ||||||| ||||||||||||||||||||||||    
T  44650374 aaaaagacaggtcttgaatccgagagaacccgatttcgagctccgttagtgcctttggagggaggtaaatgtaatt 44650449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 483 - 558
Target Start/End: Complemental strand, 6672944 - 6672869
Alignment:
Q  483 aaaaacacaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    ||||| ||||||||||||| ||||||||||||  ||| ||||| | ||||| ||||||||||||||||||||||||    
T  6672944 aaaaagacaggtcttgaatccgagagaacccgggttcaagccccgctagtgcctttggagggaggtaaatgtaatt 6672869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 483 - 558
Target Start/End: Complemental strand, 10745383 - 10745308
Alignment:
Q  483 aaaaacacaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    ||||| ||||||||||||||||||||||||||  | ||||||| | ||||| |||| |||||||||||||||||||    
T  10745383 aaaaagacaggtcttgaattcgagagaacccgggtccgagccccgctagtgcctttagagggaggtaaatgtaatt 10745308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 483 - 558
Target Start/End: Complemental strand, 25987813 - 25987738
Alignment:
Q  483 aaaaacacaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    ||||| ||||||||||||| ||||||||| ||  ||||||||| | ||||| ||||||||||||||||||||||||    
T  25987813 aaaaagacaggtcttgaatccgagagaactcgggttcgagccccgctagtgcctttggagggaggtaaatgtaatt 25987738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 483 - 558
Target Start/End: Original strand, 40156021 - 40156096
Alignment:
Q  483 aaaaacacaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    ||||| ||||||||||||| |||||||| |||  ||||||||| | ||||| ||||||||||||||||||||||||    
T  40156021 aaaaagacaggtcttgaatccgagagaatccgggttcgagccccgctagtgcctttggagggaggtaaatgtaatt 40156096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 484 - 558
Target Start/End: Complemental strand, 36836479 - 36836405
Alignment:
Q  484 aaaacacaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    |||| ||||||||||||| ||||||||||||| |||||| || | | ||| ||||||||||||||||||||||||    
T  36836479 aaaagacaggtcttgaatccgagagaacccgagttcgagtcccgctggtgcctttggagggaggtaaatgtaatt 36836405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 491 - 556
Target Start/End: Original strand, 21637886 - 21637951
Alignment:
Q  491 aggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaa 556  Q
    ||||||||||||||||||||||||  || |||||| | ||||| ||||||||||||||||||||||    
T  21637886 aggtcttgaattcgagagaacccgggtttgagccccgctagtgcctttggagggaggtaaatgtaa 21637951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 489 - 556
Target Start/End: Original strand, 17136374 - 17136441
Alignment:
Q  489 acaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaa 556  Q
    |||||| ||||||  |||||||||||  ||||||||| ||||||| ||||||||||||||||||||||    
T  17136374 acaggttttgaatctgagagaacccgggttcgagccccgttagtgcctttggagggaggtaaatgtaa 17136441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 495 - 558
Target Start/End: Complemental strand, 45137109 - 45137046
Alignment:
Q  495 cttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    ||||||| ||||||||||||  ||||||||| | ||||| ||||||||||||||||||||||||    
T  45137109 cttgaatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaatt 45137046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 489 - 556
Target Start/End: Complemental strand, 2754196 - 2754129
Alignment:
Q  489 acaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaa 556  Q
    ||||||||||||| |||||||||||| ||||||| ||   || || ||||||||||||||||||||||    
T  2754196 acaggtcttgaatccgagagaacccggattcgagtcccactaatgcctttggagggaggtaaatgtaa 2754129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 489 - 555
Target Start/End: Complemental strand, 7860291 - 7860225
Alignment:
Q  489 acaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgta 555  Q
    ||||||||||||| |||||||||| |  || |||||| | ||||| |||||||||||||||||||||    
T  7860291 acaggtcttgaatccgagagaacctgggtttgagccccgctagtgcctttggagggaggtaaatgta 7860225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 489 - 558
Target Start/End: Complemental strand, 36380277 - 36380208
Alignment:
Q  489 acaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    ||||||||||||||||||| ||| ||  || || ||| | ||||| ||||||||||||||||||||||||    
T  36380277 acaggtcttgaattcgagaaaactcgggtttgaaccccgctagtgcctttggagggaggtaaatgtaatt 36380208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 558
Target Start/End: Original strand, 3200862 - 3200937
Alignment:
Q  483 aaaaacacaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    ||||| |||| ||||||||   |||||||| | |||||||||  | ||||| ||||||||||||||||||||||||    
T  3200862 aaaaagacagatcttgaatctaagagaacctggattcgagcctcgctagtgcctttggagggaggtaaatgtaatt 3200937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 556
Target Start/End: Complemental strand, 30372823 - 30372758
Alignment:
Q  491 aggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaa 556  Q
    ||||||||||||||||||| || |  ||||||| | | ||||| ||||||| ||||||||||||||    
T  30372823 aggtcttgaattcgagagatcctgggttcgagctccgctagtgcctttggaaggaggtaaatgtaa 30372758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 483 - 558
Target Start/End: Complemental strand, 107842 - 107767
Alignment:
Q  483 aaaaacacaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    ||||| ||||||||||||||||||||||||||| ||||||||| | ||||| ||||||||||||||||||||||||    
T  107842 aaaaagacaggtcttgaattcgagagaacccgagttcgagccccgctagtgcctttggagggaggtaaatgtaatt 107767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 483 - 558
Target Start/End: Original strand, 41151153 - 41151228
Alignment:
Q  483 aaaaacacaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    ||||| ||||||||||||| ||||||||||||  ||||||||| | ||||||||||||||||||||||||||||||    
T  41151153 aaaaagacaggtcttgaatccgagagaacccgggttcgagccccgctagtgtctttggagggaggtaaatgtaatt 41151228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 483 - 558
Target Start/End: Original strand, 34721815 - 34721890
Alignment:
Q  483 aaaaacacaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    ||||| ||||||||||||| |||||||||||| |||| ||||| | ||||| ||||||||||||||||||||||||    
T  34721815 aaaaagacaggtcttgaatccgagagaacccggattcaagccccgctagtgcctttggagggaggtaaatgtaatt 34721890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 483 - 558
Target Start/End: Complemental strand, 16059504 - 16059429
Alignment:
Q  483 aaaaacacaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    ||||| ||||||||||||| ||||||||||||  ||||||||| | ||||| ||||| ||||||||||||||||||    
T  16059504 aaaaagacaggtcttgaatccgagagaacccgggttcgagccccgctagtgcctttgcagggaggtaaatgtaatt 16059429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 483 - 558
Target Start/End: Original strand, 35109672 - 35109747
Alignment:
Q  483 aaaaacacaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    ||||| ||||||||||||| ||||||||||||  |||||||||   ||||| ||||||||||||||||||||||||    
T  35109672 aaaaagacaggtcttgaatccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaatt 35109747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 483 - 558
Target Start/End: Complemental strand, 38265388 - 38265313
Alignment:
Q  483 aaaaacacaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    ||||| ||||||||||||| |||||||||| |  ||||||||| | ||||| ||||||||||||||||||||||||    
T  38265388 aaaaagacaggtcttgaatccgagagaacctgggttcgagccccgctagtgcctttggagggaggtaaatgtaatt 38265313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 489 - 556
Target Start/End: Original strand, 11216756 - 11216823
Alignment:
Q  489 acaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaa 556  Q
    |||||||||||||  |||||||||||  |||||||||  |||||| ||||||||||||||||||||||    
T  11216756 acaggtcttgaatctgagagaacccgggttcgagccccattagtgcctttggagggaggtaaatgtaa 11216823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 483 - 558
Target Start/End: Complemental strand, 18117095 - 18117020
Alignment:
Q  483 aaaaacacaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    ||||| ||||||||||||| ||||||||||||  ||||||||  | ||||| |||| |||||||||||||||||||    
T  18117095 aaaaagacaggtcttgaatccgagagaacccgggttcgagccacgctagtgcctttagagggaggtaaatgtaatt 18117020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 483 - 558
Target Start/End: Complemental strand, 38405305 - 38405230
Alignment:
Q  483 aaaaacacaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    ||||| ||||||||||||| ||||||||  ||| ||||||||  | ||||| ||||||||||||||||||||||||    
T  38405305 aaaaagacaggtcttgaatccgagagaattcgagttcgagcctcgctagtgcctttggagggaggtaaatgtaatt 38405230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 483 - 556
Target Start/End: Complemental strand, 21577249 - 21577176
Alignment:
Q  483 aaaaacacaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaa 556  Q
    ||||| ||||||||||||| ||||||||||||  |||||||||   || || ||||||||||||||||||||||    
T  21577249 aaaaagacaggtcttgaatccgagagaacccgggttcgagccccactaatgcctttggagggaggtaaatgtaa 21577176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 491 - 558
Target Start/End: Original strand, 45278441 - 45278508
Alignment:
Q  491 aggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    ||||||||||| ||||| ||||||  ||||||||| | ||||| ||||| ||||| ||||||||||||    
T  45278441 aggtcttgaatccgagataacccgggttcgagccccgctagtgcctttgaagggaagtaaatgtaatt 45278508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 558
Target Start/End: Original strand, 12472115 - 12472177
Alignment:
Q  496 ttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    |||||| ||||||||||||  |||||||||   ||||| |||||||||||||||||| |||||    
T  12472115 ttgaatccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatataatt 12472177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 520 - 558
Target Start/End: Complemental strand, 37095324 - 37095286
Alignment:
Q  520 gagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    |||||| | ||||||||||||||||||||||||||||||    
T  37095324 gagccccgctagtgtctttggagggaggtaaatgtaatt 37095286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 556
Target Start/End: Original strand, 48176380 - 48176453
Alignment:
Q  483 aaaaacacaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaa 556  Q
    ||||| |||| |||| ||| |||||||| |||  ||||||||| | ||||| ||||||| ||||||||||||||    
T  48176380 aaaaagacagatcttaaatccgagagaatccgggttcgagccccgctagtgcctttggaaggaggtaaatgtaa 48176453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 483 - 558
Target Start/End: Original strand, 19723292 - 19723367
Alignment:
Q  483 aaaaacacaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    ||||| ||||||||||||| ||||||||||||  ||||||||| | ||||| ||||||||||||||||||||||||    
T  19723292 aaaaagacaggtcttgaatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaatt 19723367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 489 - 556
Target Start/End: Original strand, 11403988 - 11404055
Alignment:
Q  489 acaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaa 556  Q
    |||||||||||||||||||||||| |  ||||||||  | ||||||||||||||||||||||||||||    
T  11403988 acaggtcttgaattcgagagaacctgggttcgagcctcgctagtgtctttggagggaggtaaatgtaa 11404055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 483 - 558
Target Start/End: Complemental strand, 32296790 - 32296715
Alignment:
Q  483 aaaaacacaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    ||||| |||||||||||||| |||||||||||  ||| ||||||| ||||| ||||| ||||||||||||||||||    
T  32296790 aaaaagacaggtcttgaatttgagagaacccgggttcaagccctgctagtgcctttgaagggaggtaaatgtaatt 32296715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 491 - 554
Target Start/End: Original strand, 4840129 - 4840192
Alignment:
Q  491 aggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgt 554  Q
    |||| |||||| ||||||||||||  ||||||||| | ||||| ||||||||||||||||||||    
T  4840129 aggttttgaatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgt 4840192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 489 - 556
Target Start/End: Complemental strand, 24475141 - 24475074
Alignment:
Q  489 acaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaa 556  Q
    ||||||||||||| ||| ||||  ||||||||||| | | ||||| ||||||||||||||||||||||    
T  24475141 acaggtcttgaatccgatagaattcgaattcgagctccgctagtgcctttggagggaggtaaatgtaa 24475074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 489 - 556
Target Start/End: Complemental strand, 27881133 - 27881066
Alignment:
Q  489 acaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaa 556  Q
    |||||||||||||  |||||||||||  ||||||||| | ||||| ||||| ||||||||||||||||    
T  27881133 acaggtcttgaatctgagagaacccgggttcgagccccgctagtgcctttgaagggaggtaaatgtaa 27881066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 489 - 556
Target Start/End: Complemental strand, 28021314 - 28021247
Alignment:
Q  489 acaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaa 556  Q
    |||||||||||||  |||||||||||  ||||||||| | ||||| ||||| ||||||||||||||||    
T  28021314 acaggtcttgaatctgagagaacccgggttcgagccccgctagtgcctttgaagggaggtaaatgtaa 28021247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 491 - 556
Target Start/End: Original strand, 41553274 - 41553339
Alignment:
Q  491 aggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaa 556  Q
    ||||||||||||||||||||||||| |||||| ||   || |||||||||||| | ||||||||||    
T  41553274 aggtcttgaattcgagagaacccgagttcgagtcccactaatgtctttggaggaacgtaaatgtaa 41553339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 525
Target Start/End: Original strand, 6097545 - 6097587
Alignment:
Q  483 aaaaacacaggtcttgaattcgagagaacccgaattcgagccc 525  Q
    ||||| |||||||||||||||||||||| |||| |||||||||    
T  6097545 aaaaagacaggtcttgaattcgagagaatccgagttcgagccc 6097587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 552
Target Start/End: Original strand, 29767168 - 29767238
Alignment:
Q  482 caaaaacacaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaat 552  Q
    |||||| |||||||||||||  |||||||||||   |||||||| | ||||| ||||| ||||||||||||    
T  29767168 caaaaagacaggtcttgaatctgagagaacccggggtcgagccccgctagtgcctttgaagggaggtaaat 29767238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 483 - 558
Target Start/End: Original strand, 36192522 - 36192597
Alignment:
Q  483 aaaaacacaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    ||||| ||||||||||||||||||||||||||  |||||||||   ||||| ||||||||||||||||||||||||    
T  36192522 aaaaagacaggtcttgaattcgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaatt 36192597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 483 - 556
Target Start/End: Original strand, 8740429 - 8740502
Alignment:
Q  483 aaaaacacaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaa 556  Q
    ||||| ||||||||||||| ||||||| ||||  ||||||||| | ||||| ||||||||||||||||||||||    
T  8740429 aaaaagacaggtcttgaatccgagagatcccgggttcgagccccgctagtgcctttggagggaggtaaatgtaa 8740502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 489 - 556
Target Start/End: Complemental strand, 46494543 - 46494476
Alignment:
Q  489 acaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaa 556  Q
    ||||||||||||| ||||||||||||  |||||||||   ||||| ||||||||||||||||||||||    
T  46494543 acaggtcttgaatccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaa 46494476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 489 - 558
Target Start/End: Original strand, 32139151 - 32139220
Alignment:
Q  489 acaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    ||||||| ||||| |||||||||| |  ||||| ||| | ||||||||||||||||||||||||||||||    
T  32139151 acaggtcatgaatccgagagaacctgggttcgaaccccgctagtgtctttggagggaggtaaatgtaatt 32139220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 483 - 558
Target Start/End: Complemental strand, 39863929 - 39863854
Alignment:
Q  483 aaaaacacaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    ||||| ||||||||||||| ||||||||||||  ||||  ||| | ||||| ||||||||||| ||||||||||||    
T  39863929 aaaaagacaggtcttgaatccgagagaacccgggttcggaccccgctagtgcctttggagggaagtaaatgtaatt 39863854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 483 - 558
Target Start/End: Original strand, 50905729 - 50905804
Alignment:
Q  483 aaaaacacaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    ||||| ||||||||||||| |||||||| | |  ||||||||| | ||||| |||||||| |||||||||||||||    
T  50905729 aaaaagacaggtcttgaatccgagagaatctgggttcgagccccgctagtgcctttggagagaggtaaatgtaatt 50905804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 483 - 558
Target Start/End: Original strand, 51066474 - 51066549
Alignment:
Q  483 aaaaacacaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    ||||| ||||||||||||| ||||||||| ||  ||||||| | | ||||| |||||||||||||||||| |||||    
T  51066474 aaaaagacaggtcttgaatccgagagaactcgggttcgagctccgctagtgcctttggagggaggtaaatataatt 51066549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 558
Target Start/End: Complemental strand, 2294861 - 2294786
Alignment:
Q  483 aaaaacacaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    ||||| ||||||||||||||||||||||| ||  ||||||    | ||||| ||||||||| ||||||||||||||    
T  2294861 aaaaagacaggtcttgaattcgagagaactcgggttcgagtttcgctagtgcctttggaggaaggtaaatgtaatt 2294786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 489 - 552
Target Start/End: Complemental strand, 51714110 - 51714047
Alignment:
Q  489 acaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaat 552  Q
    ||||||||||||| ||||||||||||  |||||||||   ||||| ||||| ||||||||||||    
T  51714110 acaggtcttgaatccgagagaacccgggttcgagccccactagtgcctttgaagggaggtaaat 51714047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 516 - 556
Target Start/End: Original strand, 22423390 - 22423430
Alignment:
Q  516 attcgagccctgttagtgtctttggagggaggtaaatgtaa 556  Q
    |||||||||| ||||||  ||||||||||||||||||||||    
T  22423390 attcgagcccggttagtacctttggagggaggtaaatgtaa 22423430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 483 - 558
Target Start/End: Original strand, 7417779 - 7417854
Alignment:
Q  483 aaaaacacaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    ||||| ||||||||||||| ||||||||||||  ||||||||| | ||||| ||||||||||||||||||||||||    
T  7417779 aaaaagacaggtcttgaatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaatt 7417854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 483 - 558
Target Start/End: Original strand, 8400836 - 8400911
Alignment:
Q  483 aaaaacacaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    ||||| ||||||||||||| ||||||||||||  ||||||||| | ||||| ||||||||||||||||||||||||    
T  8400836 aaaaagacaggtcttgaatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaatt 8400911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 483 - 558
Target Start/End: Original strand, 22855868 - 22855943
Alignment:
Q  483 aaaaacacaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    ||||| ||||||||| |||||||||||||||   ||||||||| | ||||||||||||||||||||||||||||||    
T  22855868 aaaaagacaggtcttaaattcgagagaacccaggttcgagccccgctagtgtctttggagggaggtaaatgtaatt 22855943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 496 - 556
Target Start/End: Complemental strand, 43334192 - 43334132
Alignment:
Q  496 ttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaa 556  Q
    |||||| ||||||||||||| ||||||||| | ||||||||| ||||||||||||||||||    
T  43334192 ttgaatccgagagaacccgagttcgagccccgctagtgtcttgggagggaggtaaatgtaa 43334132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 489 - 558
Target Start/End: Complemental strand, 50726142 - 50726073
Alignment:
Q  489 acaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    ||||||||||||| ||||||||  ||  ||||||||| ||||||||||||||||| |||||||| |||||    
T  50726142 acaggtcttgaatccgagagaattcgggttcgagccccgttagtgtctttggaggaaggtaaatataatt 50726073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 489 - 558
Target Start/End: Original strand, 50786706 - 50786775
Alignment:
Q  489 acaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    ||||||||||||| ||||||||  ||  ||||||||| ||||||||||||||||| |||||||| |||||    
T  50786706 acaggtcttgaatccgagagaattcgggttcgagccccgttagtgtctttggaggaaggtaaatataatt 50786775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 493 - 558
Target Start/End: Original strand, 50823689 - 50823754
Alignment:
Q  493 gtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    ||||||||| |||||||| |||  |||||| || ||||||| ||||||||||||||||||||||||    
T  50823689 gtcttgaatccgagagaatccgggttcgagtcccgttagtgcctttggagggaggtaaatgtaatt 50823754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 493 - 558
Target Start/End: Complemental strand, 50852171 - 50852106
Alignment:
Q  493 gtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    ||||||||| |||||||| |||  |||||| || ||||||| ||||||||||||||||||||||||    
T  50852171 gtcttgaatccgagagaatccgggttcgagtcccgttagtgcctttggagggaggtaaatgtaatt 50852106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 494 - 558
Target Start/End: Original strand, 34824548 - 34824612
Alignment:
Q  494 tcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    |||||||| |||||||||| || |||||| || ||||||| ||||| ||||||||||||||||||    
T  34824548 tcttgaatccgagagaacctgagttcgagtcccgttagtgcctttgaagggaggtaaatgtaatt 34824612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 483 - 556
Target Start/End: Original strand, 35198746 - 35198819
Alignment:
Q  483 aaaaacacaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaa 556  Q
    ||||| ||||||||||||| ||||||||||||  |||||||||   || || ||||| ||||||||||||||||    
T  35198746 aaaaagacaggtcttgaatccgagagaacccgggttcgagccccactaatgcctttgcagggaggtaaatgtaa 35198819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 489 - 556
Target Start/End: Complemental strand, 48078086 - 48078019
Alignment:
Q  489 acaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaa 556  Q
    ||||||||||||||||||||||| ||  ||||||||    ||||| ||||||||| ||||||||||||    
T  48078086 acaggtcttgaattcgagagaactcgggttcgagcctcactagtgcctttggaggaaggtaaatgtaa 48078019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 483 - 556
Target Start/End: Original strand, 4573360 - 4573433
Alignment:
Q  483 aaaaacacaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaa 556  Q
    ||||| ||||||||||||| ||||||||||||  |||||||||   || |||||||||||||||||||||||||    
T  4573360 aaaaagacaggtcttgaatccgagagaacccgggttcgagccccactaatgtctttggagggaggtaaatgtaa 4573433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 493 - 558
Target Start/End: Complemental strand, 30054583 - 30054518
Alignment:
Q  493 gtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    ||||||||| ||||||||||||  ||||||||| | ||||| ||||||||||||||||||||||||    
T  30054583 gtcttgaatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaatt 30054518  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 483 - 558
Target Start/End: Original strand, 12025162 - 12025237
Alignment:
Q  483 aaaaacacaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    ||||| |||| ||||||||||||||||||| |  |||||||||  |||||| ||||||||| ||||||||||||||    
T  12025162 aaaaatacagatcttgaattcgagagaacctgggttcgagccccattagtgcctttggaggaaggtaaatgtaatt 12025237  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 483 - 558
Target Start/End: Complemental strand, 30370211 - 30370136
Alignment:
Q  483 aaaaacacaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    ||||| ||| || ||||||||||||||| |||  |||||||||   ||||||||||||||||||||||||||||||    
T  30370211 aaaaagacaagttttgaattcgagagaatccgggttcgagccccactagtgtctttggagggaggtaaatgtaatt 30370136  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 489 - 558
Target Start/End: Complemental strand, 30850985 - 30850916
Alignment:
Q  489 acaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    |||| |||| ||| ||||||||| ||  ||||||||| |||||||||||||||||||||||||| |||||    
T  30850985 acagatcttaaatccgagagaactcgggttcgagccccgttagtgtctttggagggaggtaaatataatt 30850916  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 483 - 558
Target Start/End: Original strand, 20014439 - 20014514
Alignment:
Q  483 aaaaacacaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    ||||| |||| |||||||| ||||||||||||  |||||| || | ||||  ||||||||||||||||||||||||    
T  20014439 aaaaagacagatcttgaatccgagagaacccgggttcgagtcccgctagtacctttggagggaggtaaatgtaatt 20014514  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 489 - 556
Target Start/End: Original strand, 21090102 - 21090169
Alignment:
Q  489 acaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaa 556  Q
    ||||||||||||||||||||||  ||  ||||||||| | ||||| | ||||||||||||||||||||    
T  21090102 acaggtcttgaattcgagagaattcgggttcgagccccgctagtgccgttggagggaggtaaatgtaa 21090169  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 558
Target Start/End: Complemental strand, 33763405 - 33763330
Alignment:
Q  483 aaaaacacaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    ||||| |||||||||||||||||||||| |    ||||||||| | ||||| |||| |||||||| ||||||||||    
T  33763405 aaaaagacaggtcttgaattcgagagaatctaggttcgagccccgctagtgcctttagagggaggcaaatgtaatt 33763330  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 489 - 556
Target Start/End: Original strand, 45323993 - 45324060
Alignment:
Q  489 acaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaa 556  Q
    ||||||||||||| |||||||||| |  ||| ||||| | |||||  |||||||||||||||||||||    
T  45323993 acaggtcttgaatccgagagaacctgggttccagccccgctagtgcttttggagggaggtaaatgtaa 45324060  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 548
Target Start/End: Original strand, 15034436 - 15034501
Alignment:
Q  483 aaaaacacaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggt 548  Q
    ||||| ||||||||||||| ||| |||||||   ||||||||||  ||||| ||||||||||||||    
T  15034436 aaaaagacaggtcttgaatccgaaagaacccaggttcgagccctactagtgcctttggagggaggt 15034501  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 489 - 556
Target Start/End: Original strand, 17064310 - 17064377
Alignment:
Q  489 acaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaa 556  Q
    ||||||||||||| ||||||||||||  ||||||||  | ||||| ||||||||||||||||||||||    
T  17064310 acaggtcttgaatccgagagaacccgggttcgagcctcgctagtgcctttggagggaggtaaatgtaa 17064377  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 493 - 554
Target Start/End: Complemental strand, 35237164 - 35237103
Alignment:
Q  493 gtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgt 554  Q
    |||||||||||||||||| | | |||||||||| | ||||||||||| ||||||||||||||    
T  35237164 gtcttgaattcgagagaatctggattcgagccccgctagtgtctttgaagggaggtaaatgt 35237103  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 491 - 556
Target Start/End: Original strand, 14496341 - 14496406
Alignment:
Q  491 aggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaa 556  Q
    ||||||||||| ||||||||||||  |||||||||   ||||| ||||||||||||||||||||||    
T  14496341 aggtcttgaatccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaa 14496406  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 496 - 557
Target Start/End: Complemental strand, 14505661 - 14505600
Alignment:
Q  496 ttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaat 557  Q
    |||||| ||||||| ||||||||||||||| | |||||  ||||||||||||||||||||||    
T  14505661 ttgaatccgagagatcccgaattcgagccccgctagtgcttttggagggaggtaaatgtaat 14505600  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 483 - 556
Target Start/End: Complemental strand, 35163901 - 35163828
Alignment:
Q  483 aaaaacacaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaa 556  Q
    ||||| ||||||||||||| |||||||||| |  |||||||||   || || ||||||||||||||||||||||    
T  35163901 aaaaagacaggtcttgaatccgagagaaccagggttcgagccccactaatgcctttggagggaggtaaatgtaa 35163828  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 489 - 556
Target Start/End: Complemental strand, 2711879 - 2711812
Alignment:
Q  489 acaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaa 556  Q
    ||||||||||||| ||| |||||| | ||||||||||   |||||  |||||||||||||||||||||    
T  2711879 acaggtcttgaatccgatagaacctggattcgagccccactagtgcttttggagggaggtaaatgtaa 2711812  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 558
Target Start/End: Complemental strand, 19686978 - 19686903
Alignment:
Q  483 aaaaacacaggtcttgaattcgagagaacccgaattcgagccctgttagtgtctttggagggaggtaaatgtaatt 558  Q
    ||||| |||||||||||||  ||||||||| |  |||||||||   ||||| ||||| ||||||||||||||||||    
T  19686978 aaaaaaacaggtcttgaatctgagagaacctgggttcgagcccctctagtgcctttgtagggaggtaaatgtaatt 19686903  T

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