View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17259_low_16 (Length: 499)
Name: NF17259_low_16
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17259_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 12 - 482
Target Start/End: Complemental strand, 31690163 - 31689683
Alignment:
| Q |
12 |
agagaagtggtttataacttgcatactatactcagttacaaaatgttgaagaactctaatttaaagacttttgaatgattgaaaccatttcttttgtcac |
111 |
Q |
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| T |
31690163 |
agagaagtggtttgtaacttgcatactatactcagttacaaaatgttgaagaactctaatttaaagacttttgaatgattgaaaccatttcttttgtcac |
31690064 |
T |
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| Q |
112 |
catcttctcatgtttcgttgctggtaaaggctaaggaatctgataaatctgataatgtcttataggaaggaactagttgagattttcacttatgctaaaa |
211 |
Q |
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| T |
31690063 |
catcttctcatgtttcgttgctggtaaaggctaaggaatctgataaatctgataatgtcttataggaaggaactagttgagattttcacttatgctaaaa |
31689964 |
T |
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| Q |
212 |
gtaataatttgaattaggacaacaaaaacacacttcctaagttagtgtcagcctttatttgattgttcatatggatatccaatagaaaaaatagaatttc |
311 |
Q |
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| T |
31689963 |
gtaataatttgaattaggacaacaaaaacacacttcctaagttagtttcagcctttatttgattgttcatatggatatccaatagaaaaaatagaatttc |
31689864 |
T |
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| Q |
312 |
ttacactttggaag----------tgtacacatgggaaaccaattgagaagggaatgcaacaagtagatttcaacacgcgataaaaaggacatatagctc |
401 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31689863 |
ttacactttggaagtgtttgatgttgtacacatgggaaaccaattgagaagggaatgcaacaagtagatttcaacacgcgataaaaaggacatatagctc |
31689764 |
T |
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| Q |
402 |
acatcagccatactaatcaacccattgagggatcaaagtgcaacctcagaaaaatacaattacctttgaaatacagatcct |
482 |
Q |
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| T |
31689763 |
acatcagccatactaatcaacccattgagggatcaaattgcaacctcagaaaaatacaattacctttgaaatacagatcct |
31689683 |
T |
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