View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17259_low_18 (Length: 478)

Name: NF17259_low_18
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17259_low_18
NF17259_low_18
[»] chr1 (11 HSPs)
chr1 (164-430)||(1970232-1970502)
chr1 (149-431)||(2013390-2013673)
chr1 (148-249)||(23232746-23232846)
chr1 (149-252)||(44371528-44371631)
chr1 (149-246)||(43945374-43945471)
chr1 (156-249)||(48003201-48003294)
chr1 (145-246)||(12980417-12980518)
chr1 (138-249)||(46729475-46729584)
chr1 (267-431)||(33078090-33078253)
chr1 (149-245)||(34752722-34752818)
chr1 (149-200)||(15650050-15650101)
[»] chr2 (4 HSPs)
chr2 (151-246)||(35748161-35748256)
chr2 (149-266)||(11903566-11903683)
chr2 (149-266)||(30522637-30522754)
chr2 (131-209)||(17539541-17539619)
[»] chr3 (10 HSPs)
chr3 (151-266)||(33848598-33848713)
chr3 (146-249)||(41299948-41300050)
chr3 (147-249)||(26510521-26510623)
chr3 (149-249)||(41424529-41424629)
chr3 (161-247)||(36823225-36823311)
chr3 (140-229)||(21593530-21593619)
chr3 (151-238)||(31901679-31901766)
chr3 (133-238)||(31681271-31681376)
chr3 (133-238)||(31917318-31917423)
chr3 (363-408)||(31280343-31280388)
[»] chr8 (2 HSPs)
chr8 (149-267)||(13555628-13555746)
chr8 (149-267)||(13670819-13670937)
[»] chr7 (2 HSPs)
chr7 (149-266)||(22679353-22679470)
chr7 (145-247)||(33096982-33097084)
[»] chr4 (2 HSPs)
chr4 (149-249)||(28874530-28874630)
chr4 (363-408)||(16715412-16715457)
[»] chr6 (2 HSPs)
chr6 (149-268)||(2722546-2722665)
chr6 (149-249)||(34176166-34176265)
[»] chr5 (3 HSPs)
chr5 (299-394)||(26343555-26343650)
chr5 (131-246)||(41471653-41471768)
chr5 (366-402)||(26316084-26316120)


Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-113; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 164 - 430
Target Start/End: Original strand, 1970232 - 1970502
Alignment:
Q  164 ttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaatccattcaggaaacaccc 263  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  1970232 ttaaaaccaaaccaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaatccattcagcgaacaccc 1970331  T
Q  264 ctaataggtggt-----atggttgttaagaaaatatacaagaggccatgatgatatatccaaaattaagatagaagaaaataaactaattattacactct 358  Q
    ||||||||||||     ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |    
T  1970332 ctaataggtggtatggtatggttggtaagaaaatatacaagaggccatgacgatatatccaaaattaagatagaagaaaataaactaattattacactat 1970431  T
Q  359 tttgtgccttatttcatttcgttaccaacatcttaaagtacaaatccatagttgcaaggttacgtgaaatta 430  Q
    || ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  1970432 ttggtgccttgtttcatttcgttaccaacatcttagagtacaaatccatagttgcaaggtt-cgtgaaatta 1970502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 149 - 431
Target Start/End: Original strand, 2013390 - 2013673
Alignment:
Q  149 ggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaatcc 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| ||||||||| || |||||||||||||||||     
T  2013390 ggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaattgaagagattggatcagatggttttttcttctaaaaccgaaccaatca 2013489  T
Q  249 attcaggaaacacccctaataggtggtatggttgttaaga--aaatatacaagaggccatgatgatatatccaaaattaagatagaagaaaataaactaa 346  Q
    ||   |  |||||||||||||| | |||||||||  || |  | |||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||    
T  2013490 atgtcgcgaacacccctaatagatagtatggttggaaaaaatatatatacaagaagccatgacgatatatcccaaattaagatagaagaaaataaactaa 2013589  T
Q  347 ttattacactcttttgtgccttatttcatttcgttaccaacatcttaaagtacaaatccatagttgcaaggttacgtgaaattac 431  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  2013590 ttattacactctttagtgccttatttcatttcgttaccaacatcttagagtacaaatccatagttgcaaggtt-cgtgaaattac 2013673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 148 - 249
Target Start/End: Original strand, 23232746 - 23232846
Alignment:
Q  148 cggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaatc 247  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||| ||||| | ||| ||| ||||  |||||||||||||| |||||||||||||||    
T  23232746 cggattggatttgattttaaaaccaaaccaattggacgaacaaataacaaaaccg-aaatattggatcggatggtttttcctcccaaaaccgaaccaatc 23232844  T
Q  248 ca 249  Q
    ||    
T  23232845 ca 23232846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 44371528 - 44371631
Alignment:
Q  149 ggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaatcc 248  Q
    ||||||||||||||||||||||||||  |||||||||||||||||| ||| | ||||||||| ||||| ||| |||||||| | |||| |||| ||||||    
T  44371528 ggattggatttgattttaaaaccaaactaattggatgaacaaataacaaacccgaaaagattggatcaaatgatttttccttccaaaatcgaaacaatcc 44371627  T
Q  249 attc 252  Q
    ||||    
T  44371628 attc 44371631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 149 - 246
Target Start/End: Complemental strand, 43945471 - 43945374
Alignment:
Q  149 ggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaat 246  Q
    |||| |||||||||||||||||||||   |||||||||||||||||||||||  || ||||| ||||| ||| ||||||||||||||||| |||||||    
T  43945471 ggatcggatttgattttaaaaccaaactgattggatgaacaaataagaaaaccaaatagattggatcagatgatttttcctcctaaaaccaaaccaat 43945374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 156 - 249
Target Start/End: Original strand, 48003201 - 48003294
Alignment:
Q  156 atttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaatcca 249  Q
    |||||||||||||| |||| |||||| |||||||||||| ||||  ||||||||| ||||| || ||||||||||  |||| ||||||||||||    
T  48003201 atttgattttaaaatcaaaccaattgaatgaacaaataacaaaagagaaaagattggatcaaatagtttttcctctcaaaatcgaaccaatcca 48003294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 145 - 246
Target Start/End: Complemental strand, 12980518 - 12980417
Alignment:
Q  145 gatcggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaacca 244  Q
    |||| ||||| |||||||||||||| ||||  |||||||| ||||||||| ||||  ||| ||||| ||||  |||||||||||||| |||||| |||||    
T  12980518 gatcagattgaatttgattttaaaatcaaacaaattggataaacaaataataaaatcgaagagattggatcggatggtttttcctcccaaaaccaaacca 12980419  T
Q  245 at 246  Q
    ||    
T  12980418 at 12980417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 138 - 249
Target Start/End: Original strand, 46729475 - 46729584
Alignment:
Q  138 tggatcagatcggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaac 237  Q
    ||||||| || |||||| ||||||||||||   ||||  ||||  |||||||||||| ||||| ||| ||||| ||||  |||||||||||||||||||     
T  46729475 tggatcatattggattgaatttgattttaat--caaactaattaaatgaacaaataacaaaaccgaagagattggatcgaatggtttttcctcctaaaat 46729572  T
Q  238 cgaaccaatcca 249  Q
    ||||||||||||    
T  46729573 cgaaccaatcca 46729584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 267 - 431
Target Start/End: Original strand, 33078090 - 33078253
Alignment:
Q  267 ataggtggtatggttgttaagaaaatatacaagaggccatgatgatatatccaaaattaagatagaagaaaataaactaattattacactcttttgtgcc 366  Q
    |||| |||||||||||  |||||| ||||||||||| ||||| | |||||| |||||||| |||||  ||||||| | ||||||  ||||| || ||||     
T  33078090 atagatggtatggttggaaagaaattatacaagaggtcatgacgttatatcaaaaattaatatagagtaaaataatcaaattat--cactc-ttagtgca 33078186  T
Q  367 ttatttcatt---tcgttaccaacatcttaaagtacaaatccatagttgcaaggttacgtgaaattac 431  Q
    ||||||||||   ||||||  ||||||||| |||||||||| ||  ||||||| || |||||||||||    
T  33078187 ttatttcatttcgtcgttagtaacatcttagagtacaaatctattattgcaagatt-cgtgaaattac 33078253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 245
Target Start/End: Original strand, 34752722 - 34752818
Alignment:
Q  149 ggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaa 245  Q
    |||||| |||| ||||||||  |||| ||||| ||||||||||||| ||||||||| | ||| ||||  ||| ||||||||   |||||||||||||    
T  34752722 ggattgaatttaattttaaagtcaaaccaatttgatgaacaaataacaaaactgaagaaatttgatcggatgatttttcctttcaaaaccgaaccaa 34752818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 15650101 - 15650050
Alignment:
Q  149 ggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaac 200  Q
    ||||| |||| ||||||||||||||| |||||||||||| |||||| |||||    
T  15650101 ggattagattagattttaaaaccaaaccaattggatgaataaataacaaaac 15650050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 151 - 246
Target Start/End: Original strand, 35748161 - 35748256
Alignment:
Q  151 attggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaat 246  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||  ||| ||||| |||||||||||||||||||||||||||||    
T  35748161 attggatttgattttaaaaccaaaccaattggatgaacaaataacaaaaccgaaataattggatcaaatggtttttcctcctaaaaccgaaccaat 35748256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 149 - 266
Target Start/End: Complemental strand, 11903683 - 11903566
Alignment:
Q  149 ggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaatcc 248  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||| | ||| ||||  |||||||||||| | ||||||||||||||||    
T  11903683 ggattggatttgattttaaaaccaaaccaattggatgaacaaataacaaaaccgaagacattggatcggatggtttttccttccaaaaccgaaccaatcc 11903584  T
Q  249 attcaggaaacaccccta 266  Q
    | || |  ||||||||||    
T  11903583 aatccgcgaacaccccta 11903566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 149 - 266
Target Start/End: Original strand, 30522637 - 30522754
Alignment:
Q  149 ggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaatcc 248  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||| | ||| ||||  |||||||||||| | ||||||||||||||||    
T  30522637 ggattggatttgattttaaaaccaaaccaattggatgaacaaataacaaaaccgaagacattggatcggatggtttttccttccaaaaccgaaccaatcc 30522736  T
Q  249 attcaggaaacaccccta 266  Q
    | || |  ||||||||||    
T  30522737 aatccgcgaacaccccta 30522754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 131 - 209
Target Start/End: Complemental strand, 17539619 - 17539541
Alignment:
Q  131 atttttatggatcagatcggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagat 209  Q
    |||||| ||||| |||| | |||| ||||||||||||||||||| ||||||||||||||||||| ||||  ||||||||    
T  17539619 atttttttggattagattgaattgaatttgattttaaaaccaaaccaattggatgaacaaataacaaaatcgaaaagat 17539541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 9e-28; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 151 - 266
Target Start/End: Complemental strand, 33848713 - 33848598
Alignment:
Q  151 attggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaatccat 250  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||| ||||  ||| ||||||||| |||||| |||||||||||     
T  33848713 attggatttgattttaaaaccaaaccaattggatgaacaaataacaaaactgaagagattggatcggatgatttttcctcgtaaaactgaaccaatccaa 33848614  T
Q  251 tcaggaaacaccccta 266  Q
    || |  ||||||||||    
T  33848613 tccgcgaacaccccta 33848598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 146 - 249
Target Start/End: Complemental strand, 41300050 - 41299948
Alignment:
Q  146 atcggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaa 245  Q
    ||||||||||||||||||| |||| |||| ||||||||||||||| |||||||||| ||  |||| ||||| ||| ||||||||||||||||||||||||    
T  41300050 atcggattggatttgatttcaaaatcaaaccaattggatgaacaa-taagaaaactaaagtgattggatcagatgatttttcctcctaaaaccgaaccaa 41299952  T
Q  246 tcca 249  Q
    ||||    
T  41299951 tcca 41299948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 147 - 249
Target Start/End: Complemental strand, 26510623 - 26510521
Alignment:
Q  147 tcggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaat 246  Q
    |||||||||||||||||||||||||||| |||||||||||||||| || | ||| ||||| ||| ||||| ||| ||||| |||| ||||||||||||||    
T  26510623 tcggattggatttgattttaaaaccaaaccaattggatgaacaaacaacagaaccgaaaaaattggatcagatgatttttactcccaaaaccgaaccaat 26510524  T
Q  247 cca 249  Q
    |||    
T  26510523 cca 26510521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 149 - 249
Target Start/End: Original strand, 41424529 - 41424629
Alignment:
Q  149 ggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaatcc 248  Q
    ||||||||||||||||||||||||||  |||||||||| ||||||| |||||||||   ||| ||||   ||||||||||||| ||||||||||||||||    
T  41424529 ggattggatttgattttaaaaccaaacaaattggatgagcaaataacaaaactgaagtaattggatcggttggtttttcctcccaaaaccgaaccaatcc 41424628  T
Q  249 a 249  Q
    |    
T  41424629 a 41424629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 36823311 - 36823225
Alignment:
Q  161 attttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaatc 247  Q
    |||||||||| ||||||||| ||||||||||||| ||||| ||| ||||| ||||| ||| |||||||||| |||||||||||||||    
T  36823311 attttaaaacaaaatcaattagatgaacaaataacaaaaccgaagagattggatcaaatgatttttcctcccaaaaccgaaccaatc 36823225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 140 - 229
Target Start/End: Complemental strand, 21593619 - 21593530
Alignment:
Q  140 gatcagatcggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcct 229  Q
    |||||||| |||||| |||||||||||||||||||  |||| |||||| |||||| ||||||||||||||| ||||| ||| ||||||||    
T  21593619 gatcagattggattgaatttgattttaaaaccaaactaattagatgaataaataacaaaactgaaaagattggatcagatgatttttcct 21593530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 151 - 238
Target Start/End: Original strand, 31901679 - 31901766
Alignment:
Q  151 attggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaacc 238  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||| |||   ||| ||||  |||||||||||||| ||||||    
T  31901679 attggatttgattttaaaaccaaatcaattggataaacaaataacaaaaccgaagtaattggatcggatggtttttcctcccaaaacc 31901766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 133 - 238
Target Start/End: Complemental strand, 31681376 - 31681271
Alignment:
Q  133 ttttatggatcagatcggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcct 232  Q
    |||| |||||||||| | ||| |||||||||||||||||||| ||||||||||||||||||| |||||  ||   ||| ||||  ||||||||||||||     
T  31681376 ttttgtggatcagattgaattagatttgattttaaaaccaaaccaattggatgaacaaataacaaaacccaagtaattggatcggatggtttttcctccc 31681277  T
Q  233 aaaacc 238  Q
    ||||||    
T  31681276 aaaacc 31681271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 133 - 238
Target Start/End: Original strand, 31917318 - 31917423
Alignment:
Q  133 ttttatggatcagatcggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcct 232  Q
    |||| |||||| ||| | ||| |||||||||||||||||||| ||||||||||||||||||| ||||| |||   ||| ||||| ||||||||| ||||     
T  31917318 ttttgtggatcggattgaattagatttgattttaaaaccaaaccaattggatgaacaaataacaaaaccgaagtaattggatcagatggttttttctccc 31917417  T
Q  233 aaaacc 238  Q
    ||||||    
T  31917418 aaaacc 31917423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 408
Target Start/End: Complemental strand, 31280388 - 31280343
Alignment:
Q  363 tgccttatttcatttcgttaccaacatcttaaagtacaaatccata 408  Q
    |||||||||||||||  |||||| ||| ||||||||||||||||||    
T  31280388 tgccttatttcattttattaccatcatattaaagtacaaatccata 31280343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 149 - 267
Target Start/End: Original strand, 13555628 - 13555746
Alignment:
Q  149 ggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaatcc 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | ||| ||||  || ||||||||| | ||||||||||||||||    
T  13555628 ggattggatttgattttaaaaccaaatcaattggatgaacaaataacaaaaccgaagacattggatcggatagtttttccttccaaaaccgaaccaatcc 13555727  T
Q  249 attcaggaaacacccctaa 267  Q
    | || |  |||||||||||    
T  13555728 aatccgcgaacacccctaa 13555746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 149 - 267
Target Start/End: Complemental strand, 13670937 - 13670819
Alignment:
Q  149 ggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaatcc 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | ||| ||||  || ||||||||| | ||||||||||||||||    
T  13670937 ggattggatttgattttaaaaccaaatcaattggatgaacaaataacaaaaccgaagacattggatcggatagtttttccttccaaaaccgaaccaatcc 13670838  T
Q  249 attcaggaaacacccctaa 267  Q
    | || |  |||||||||||    
T  13670837 aatccgcgaacacccctaa 13670819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 149 - 266
Target Start/End: Original strand, 22679353 - 22679470
Alignment:
Q  149 ggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaatcc 248  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||| | ||| ||| | |||||||||||| | ||||||||||||||||    
T  22679353 ggattggatttgattttaaaaccaaaccaattggatgaacaaataacaaaaccgaagacattggattagatggtttttccttccaaaaccgaaccaatcc 22679452  T
Q  249 attcaggaaacaccccta 266  Q
    | || |  ||||||||||    
T  22679453 aatccgcgaacaccccta 22679470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 145 - 247
Target Start/End: Complemental strand, 33097084 - 33096982
Alignment:
Q  145 gatcggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaacca 244  Q
    ||||||||||  |||||||||||||||||| ||||||||||||||| ||| |||||  ||   ||| ||||| ||  |||||||||| ||||||||||||    
T  33097084 gatcggattgagtttgattttaaaaccaaaccaattggatgaacaagtaacaaaaccaaagtaattggatcagattatttttcctcccaaaaccgaacca 33096985  T
Q  245 atc 247  Q
    |||    
T  33096984 atc 33096982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 149 - 249
Target Start/End: Original strand, 28874530 - 28874630
Alignment:
Q  149 ggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaatcc 248  Q
    |||||| ||||||||||||||||||| || |||||||||||||||| ||||  ||| ||||| ||||||||| ||||||||  |||||| ||||||||||    
T  28874530 ggattgaatttgattttaaaaccaaaccatttggatgaacaaataacaaaatcgaagagattggatcatatgatttttccttttaaaactgaaccaatcc 28874629  T
Q  249 a 249  Q
    |    
T  28874630 a 28874630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 408
Target Start/End: Original strand, 16715412 - 16715457
Alignment:
Q  363 tgccttatttcatttcgttaccaacatcttaaagtacaaatccata 408  Q
    |||||||||||||||| |||||| ||||||| | ||||||||||||    
T  16715412 tgccttatttcatttcattaccatcatcttataatacaaatccata 16715457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 149 - 268
Target Start/End: Original strand, 2722546 - 2722665
Alignment:
Q  149 ggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaatcc 248  Q
    |||||||||||||||||||||||||| |||||| ||||| |||||  |||||  ||   ||| ||||| ||| ||||| |||| ||||||||||||||||    
T  2722546 ggattggatttgattttaaaaccaaaccaattgaatgaataaatagcaaaaccaaagcaattggatcagatgattttttctcccaaaaccgaaccaatcc 2722645  T
Q  249 attcaggaaacacccctaat 268  Q
    | || | |||||||||||||    
T  2722646 aatccgcaaacacccctaat 2722665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 149 - 249
Target Start/End: Original strand, 34176166 - 34176265
Alignment:
Q  149 ggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctcctaaaaccgaaccaatcc 248  Q
    ||||||||||||||| ||| |  ||| |||||||||||| |||||  ||||| ||||||||| ||||  |||||||||||||| |||| |||||||||||    
T  34176166 ggattggatttgattctaagattaaaccaattggatgaataaatagcaaaaccgaaaagatt-gatcggatggtttttcctccaaaaatcgaaccaatcc 34176264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 394
Target Start/End: Complemental strand, 26343650 - 26343555
Alignment:
Q  299 gaggccatgatgatatatccaaaattaagatagaagaaaataaactaattattacactcttttgtgccttatttcatttcgttaccaacatcttaa 394  Q
    ||||||||| ||||||||||||| |||||| |||||| || || |||||||| | | ||||| ||| ||||||| ||||| || ||||||||||||    
T  26343650 gaggccatggtgatatatccaaatttaagacagaagagaacaatctaattataatattctttagtgtcttattttatttcatttccaacatcttaa 26343555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 246
Target Start/End: Original strand, 41471653 - 41471768
Alignment:
Q  131 atttttatggatcagatcggattggatttgattttaaaaccaaatcaattggatgaacaaataagaaaactgaaaagattagatcatatggtttttcctc 230  Q
    |||||| || ||| ||| |||||  |||| ||| |||||||||| |||||| |||||||||||| ||||  ||| ||||||| ||| ||| |||||||||    
T  41471653 atttttttgaatcggattggattaaattttattctaaaaccaaaccaattgaatgaacaaataacaaaatcgaagagattagctcaaatgatttttcctc 41471752  T
Q  231 ctaaaaccgaaccaat 246  Q
    | | ||| ||||||||    
T  41471753 ccataactgaaccaat 41471768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 402
Target Start/End: Complemental strand, 26316120 - 26316084
Alignment:
Q  366 cttatttcatttcgttaccaacatcttaaagtacaaa 402  Q
    ||||||||||||| |||||||||||||| ||||||||    
T  26316120 cttatttcatttcattaccaacatcttagagtacaaa 26316084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University