View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17259_low_19 (Length: 461)
Name: NF17259_low_19
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17259_low_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 32 - 444
Target Start/End: Complemental strand, 4210527 - 4210115
Alignment:
| Q |
32 |
gagcaaaacaagtttagacaaacaagatatgaatctctaatacaatttcggacactgaaaccattaagaccctttattcataattcatatcaacgcctcc |
131 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4210527 |
gagcaaaacaagtttagacaaacaatatatgaatctctaatacaatttcggacactgaaaccattaagaccctttattcataattcatatcaacgcctcc |
4210428 |
T |
|
| Q |
132 |
aaacattactgcttgataacaaatataagtacggttactggttagagtaacaaccaatggaatgaactacgcaaattgaataacaatttaattcgaactt |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4210427 |
aaacattactgcttgataacaaatataagtatggttactggttagaggaacaaccattggaatgaactacgcaaattgaataacaatttaattcgaactt |
4210328 |
T |
|
| Q |
232 |
caaatgggtgttctcatagaataatttcatttcatttcaagatatcatcaaattgaggccaattctatggtccgcaagtgagacaagtcttgcagcacaa |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4210327 |
caaatgggtgttctcatagaataatttcatttcatttcaagatatcatcaaattgaggccaattctatggtccacaagtgagacaagtcttgcagcacaa |
4210228 |
T |
|
| Q |
332 |
gcttttttccaccctcggatcaaatgtgatatgatgcgacttatcaatccaattgtagaaaacaaacttctgcatggtgcgagactaatttacttgttca |
431 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
4210227 |
gcttttttccaccctcggatcaaatgtgatataatgcgacttatcgatccaattgtagaaaacaaacttctgcatggtgcgagactaatttacttgtgca |
4210128 |
T |
|
| Q |
432 |
cattagacaaagc |
444 |
Q |
| |
|
||||||||||||| |
|
|
| T |
4210127 |
cattagacaaagc |
4210115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 355 - 440
Target Start/End: Original strand, 41211555 - 41211640
Alignment:
| Q |
355 |
atgtgatatgatgcgacttatcaatccaattgtagaaaacaaacttctgcatggtgcgagactaatttacttgttcacattagaca |
440 |
Q |
| |
|
||||||||||||| ||||||| ||| ||| ||| |||| ||| | || ||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
41211555 |
atgtgatatgatgtgacttattgatctaatagtaaaaaatgaacatgtgtatggtgcaagactaatttacttgtgcacattagaca |
41211640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 348 - 444
Target Start/End: Original strand, 18897657 - 18897753
Alignment:
| Q |
348 |
ggatcaaatgtgatatgatgcgacttatcaatccaattgtagaaaacaaacttctgcatggtgcgagactaatttacttgttcacattagacaaagc |
444 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| | | ||||||||||| |||||||| ||||| ||||||| || ||||||||||||||| |
|
|
| T |
18897657 |
ggatcaaatgtgatatgatgcgatttatcaatccaatggaaaaaaacaaacttgctcatggtgcaagacttatttactcgtgcacattagacaaagc |
18897753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 389 - 443
Target Start/End: Original strand, 1723671 - 1723725
Alignment:
| Q |
389 |
gaaaacaaacttctgcatggtgcgagactaatttacttgttcacattagacaaag |
443 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
1723671 |
gaaaacaaacttcctcatggtgcaagactaatttacttgtgcacattagacaaag |
1723725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 342 - 444
Target Start/End: Original strand, 52416431 - 52416533
Alignment:
| Q |
342 |
accctcggatcaaatgtgatatgatgcgacttatcaatccaattgtagaaaacaaacttctgcatggtgcgagactaatttacttgttcacattagacaa |
441 |
Q |
| |
|
||||| ||||||| |||||| ||||| ||||| | || ||| ||||||||||||||| |||||||||| ||||| ||||| |||| |||||||||||| |
|
|
| T |
52416431 |
acccttggatcaattgtgatttgatgtgacttgttgattcaacggtagaaaacaaacttgtgcatggtgctagacttatttatttgtgcacattagacaa |
52416530 |
T |
|
| Q |
442 |
agc |
444 |
Q |
| |
|
||| |
|
|
| T |
52416531 |
agc |
52416533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 348 - 444
Target Start/End: Complemental strand, 34253086 - 34252990
Alignment:
| Q |
348 |
ggatcaaatgtgatatgatgcgacttatcaatccaattgtagaaaacaaacttctgcatggtgcgagactaatttacttgttcacattagacaaagc |
444 |
Q |
| |
|
||||||||||||||||| || ||||||| | | ||| |||||||||| ||| |||||||||| |||||||| || |||| ||||||||||||||| |
|
|
| T |
34253086 |
ggatcaaatgtgatatgttgtgacttattgacctaatgctagaaaacaatcttgtgcatggtgcaagactaatatatttgtgcacattagacaaagc |
34252990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 444
Target Start/End: Complemental strand, 6126177 - 6126082
Alignment:
| Q |
348 |
ggatcaaatgtgatatgatgcgacttatcaatccaattgtagaaaacaaacttctgcatggtgcgagactaatttacttgttcacattagacaaagc |
444 |
Q |
| |
|
|||||||||||||||||||| || |||| ||| ||| |||||||||| |||| ||| |||||| |||| |||||||||| ||| ||||||||||| |
|
|
| T |
6126177 |
ggatcaaatgtgatatgatgtgatttattgatcgaatggtagaaaacatacttgtgcgtggtgc-tgactgatttacttgtgcacgttagacaaagc |
6126082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 390 - 439
Target Start/End: Complemental strand, 38676455 - 38676406
Alignment:
| Q |
390 |
aaaacaaacttctgcatggtgcgagactaatttacttgttcacattagac |
439 |
Q |
| |
|
|||||| |||| |||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
38676455 |
aaaacacacttgtgcatggtgcaagactaatttacttgtgcacattagac |
38676406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University