View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17259_low_2 (Length: 799)

Name: NF17259_low_2
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17259_low_2
NF17259_low_2
[»] scaffold0007 (1 HSPs)
scaffold0007 (15-154)||(232370-232509)
[»] chr1 (5 HSPs)
chr1 (15-150)||(14613572-14613710)
chr1 (56-180)||(46923668-46923792)
chr1 (56-163)||(39222610-39222717)
chr1 (137-177)||(4199100-4199140)
chr1 (33-67)||(32713224-32713258)
[»] chr4 (13 HSPs)
chr4 (56-154)||(9958175-9958273)
chr4 (36-183)||(42563131-42563278)
chr4 (56-163)||(49065623-49065730)
chr4 (105-183)||(32935623-32935701)
chr4 (91-153)||(21058716-21058778)
chr4 (56-180)||(21713237-21713361)
chr4 (109-178)||(25146879-25146948)
chr4 (90-177)||(38131332-38131419)
chr4 (84-122)||(9958203-9958241)
chr4 (139-180)||(1939434-1939475)
chr4 (105-154)||(9957579-9957628)
chr4 (31-72)||(32304773-32304814)
chr4 (20-69)||(37576625-37576673)
[»] chr8 (14 HSPs)
chr8 (32-154)||(36932912-36933034)
chr8 (139-180)||(4412600-4412641)
chr8 (270-335)||(8765036-8765101)
chr8 (34-155)||(10528885-10529006)
chr8 (56-177)||(34471664-34471785)
chr8 (15-52)||(36701884-36701921)
chr8 (32-72)||(7130148-7130188)
chr8 (32-67)||(24190936-24190971)
chr8 (51-150)||(36701901-36702000)
chr8 (111-177)||(20669560-20669626)
chr8 (91-177)||(20669807-20669893)
chr8 (105-151)||(36701294-36701340)
chr8 (26-67)||(34743270-34743311)
chr8 (139-180)||(37226990-37227031)
[»] chr3 (8 HSPs)
chr3 (56-154)||(45801927-45802025)
chr3 (83-183)||(7956360-7956460)
chr3 (90-178)||(2182595-2182683)
chr3 (84-163)||(23029555-23029634)
chr3 (84-154)||(36182819-36182889)
chr3 (34-167)||(29523163-29523296)
chr3 (56-163)||(48086750-48086857)
chr3 (84-154)||(36182787-36182857)
[»] chr2 (10 HSPs)
chr2 (37-126)||(31119446-31119535)
chr2 (51-150)||(36073673-36073772)
chr2 (34-180)||(11815457-11815603)
chr2 (109-171)||(20147290-20147352)
chr2 (31-72)||(33710910-33710951)
chr2 (139-171)||(9829606-9829638)
chr2 (105-177)||(28030432-28030504)
chr2 (83-177)||(29132734-29132828)
chr2 (84-122)||(29132735-29132773)
chr2 (90-147)||(30398189-30398246)
[»] scaffold0010 (1 HSPs)
scaffold0010 (34-122)||(34719-34807)
[»] chr6 (5 HSPs)
chr6 (34-180)||(4362363-4362509)
chr6 (83-183)||(13312474-13312574)
chr6 (31-67)||(32879713-32879749)
chr6 (111-180)||(5741530-5741599)
chr6 (139-180)||(35018808-35018849)
[»] chr7 (4 HSPs)
chr7 (111-183)||(36653806-36653878)
chr7 (56-180)||(39476419-39476543)
chr7 (33-67)||(8231896-8231930)
chr7 (34-72)||(42629201-42629239)
[»] chr5 (6 HSPs)
chr5 (34-178)||(2740506-2740650)
chr5 (56-160)||(7084044-7084148)
chr5 (32-71)||(17092555-17092594)
chr5 (34-72)||(14410254-14410292)
chr5 (109-177)||(10397845-10397914)
chr5 (111-168)||(35048704-35048761)


Alignment Details
Target: scaffold0007 (Bit Score: 80; Significance: 4e-37; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 15 - 154
Target Start/End: Original strand, 232370 - 232509
Alignment:
Q  15 ggagtataataataactcagcgtgagttaactcacgcagcctgacttaagtcatgcataaaatacaatgtgcgttagttaagttacgcatcgtgacttaa 114  Q
    |||||| |||||||||||| ||||||||||||||||| || |||||||||||| ||||||||||||| ||| ||||||||||| ||||  ||||||||||    
T  232370 ggagtacaataataactcatcgtgagttaactcacgcggcgtgacttaagtcacgcataaaatacaacgtgtgttagttaagtcacgctgcgtgacttaa 232469  T
Q  115 ctaacgcaggggtaatttggacaaggctgcagggcgcgag 154  Q
    |||||||| | ||||||| | || ||||||||||||||||    
T  232470 ctaacgcaagagtaatttaggcatggctgcagggcgcgag 232509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 2e-30; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 15 - 150
Target Start/End: Complemental strand, 14613710 - 14613572
Alignment:
Q  15 ggagtataataataactcagcgtgagtt---aactcacgcagcctgacttaagtcatgcataaaatacaatgtgcgttagttaagttacgcatcgtgact 111  Q
    |||||| |||||||||||||||||||||   |||||||||||| |||||||||||| ||||||||||||| ||||||||||||||| |||   ||||| |    
T  14613710 ggagtacaataataactcagcgtgagttgttaactcacgcagcgtgacttaagtcacgcataaaatacaacgtgcgttagttaagtcacgttgcgtgatt 14613611  T
Q  112 taactaacgcaggggtaatttggacaaggctgcagggcg 150  Q
    |||||||||||  |||||||| | || ||||||||||||    
T  14613610 taactaacgcaaaggtaatttaggcatggctgcagggcg 14613572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 180
Target Start/End: Complemental strand, 46923792 - 46923668
Alignment:
Q  56 tgacttaagtcatgcataaaatacaatgtgcgttagttaagttacgcatcgtgacttaactaacgcaggggtaatttggacaaggctgcagggcgcgagc 155  Q
    |||||||||||| ||||| | || || ||||| ||||||||| |||   |||||| |||||| |||| ||| | ||| | || |||||||||||||||||    
T  46923792 tgacttaagtcacgcatagattataaggtgcgctagttaagtcacgttgcgtgacgtaactagcgcaagggcatttttggcatggctgcagggcgcgagc 46923693  T
Q  156 aaaatgtgttggggaaagagcagaa 180  Q
    ||||||||  |||  ||||||||||    
T  46923692 aaaatgtgcagggtgaagagcagaa 46923668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 56 - 163
Target Start/End: Complemental strand, 39222717 - 39222610
Alignment:
Q  56 tgacttaagtcatgcataaaatacaatgtgcgttagttaagttacgcatcgtgacttaactaacgcaggggtaatttggacaaggctgcagggcgcgagc 155  Q
    |||||||||||| ||||| | || || | ||| ||||||||| ||||  ||||||||||||| |||| ||  | ||| | || |||||||||||||||||    
T  39222717 tgacttaagtcacgcatagattataaggcgcgctagttaagtcacgctgcgtgacttaactagcgcaaggacatttttggcatggctgcagggcgcgagc 39222618  T
Q  156 aaaatgtg 163  Q
    ||||||||    
T  39222617 aaaatgtg 39222610  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 4199100 - 4199140
Alignment:
Q  137 aaggctgcagggcgcgagcaaaatgtgttggggaaagagca 177  Q
    ||||||||||||||||||||||||||||||||  |||||||    
T  4199100 aaggctgcagggcgcgagcaaaatgtgttgggtgaagagca 4199140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 67
Target Start/End: Complemental strand, 32713258 - 32713224
Alignment:
Q  33 agcgtgagttaactcacgcagcctgacttaagtca 67  Q
    |||||||||||||||||||||| ||||||||||||    
T  32713258 agcgtgagttaactcacgcagcgtgacttaagtca 32713224  T

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Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 9958175 - 9958273
Alignment:
Q  56 tgacttaagtcatgcataaaatacaatgtgcgttagttaagttacgcatcgtgacttaactaacgcaggggtaatttggacaaggctgcagggcgcgag 154  Q
    |||||||||||| ||||||||||||| ||||||||||||||| ||||  ||||||||||||||||||  |||||||| | || ||||||||||||||||    
T  9958175 tgacttaagtcacgcataaaatacaacgtgcgttagttaagtcacgctgcgtgacttaactaacgcaatggtaatttaggcatggctgcagggcgcgag 9958273  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 183
Target Start/End: Original strand, 42563131 - 42563278
Alignment:
Q  36 gtgagttaactcacgcagcctgacttaagtcatgcataaaatacaatgtgcgttagttaagttacgcatcgtgacttaactaacgcaggggtaatttgga 135  Q
    |||||||||||||||| ||   |||||||||| |||||| ||||||  ||||   ||||| | ||||| ||||||||||||  |||||||||||||||      
T  42563131 gtgagttaactcacgccgcgctacttaagtcacgcataagatacaacatgcgcaggttaaatcacgcagcgtgacttaacttgcgcaggggtaatttgag 42563230  T
Q  136 caaggctgcagggcgcgagcaaaatgtgttggggaaagagcagaaatc 183  Q
    ||| ||| ||||||||||| |   |||| ||||| |||||||||||||    
T  42563231 caatgctacagggcgcgagtattttgtgctgggggaagagcagaaatc 42563278  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 163
Target Start/End: Original strand, 49065623 - 49065730
Alignment:
Q  56 tgacttaagtcatgcataaaatacaatgtgcgttagttaagttacgcatcgtgacttaactaacgcaggggtaatttggacaaggctgcagggcgcgagc 155  Q
    |||||||||||| |||||   || || ||||| ||||||||| ||||| ||||||||||||| |||| ||| | ||| | || |||||||||||||||||    
T  49065623 tgacttaagtcacgcatagtttataaggtgcgctagttaagtcacgcaacgtgacttaactagcgcaagggcatttttggcatggctgcagggcgcgagc 49065722  T
Q  156 aaaatgtg 163  Q
    ||||||||    
T  49065723 aaaatgtg 49065730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 183
Target Start/End: Complemental strand, 32935701 - 32935623
Alignment:
Q  105 cgtgacttaactaacgcaggggta-atttggacaaggctgcagggcgcgagcaaaatgtgttggggaaagagcagaaatc 183  Q
    |||||||||||||||||||||||| ||| ||| | |||||||||| |||||| ||||||| ||||| |||||||||||||    
T  32935701 cgtgacttaactaacgcaggggtatattagga-atggctgcagggtgcgagcgaaatgtgctgggggaagagcagaaatc 32935623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 153
Target Start/End: Original strand, 21058716 - 21058778
Alignment:
Q  91 gttaagttacgcatcgtgacttaactaacgcaggggtaatttggacaaggctgcagggcgcga 153  Q
    ||||||| ||||| ||||||||||||  |||| ||||||||||||||| ||||||||||||||    
T  21058716 gttaagtcacgcagcgtgacttaacttgcgcaagggtaatttggacaatgctgcagggcgcga 21058778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 180
Target Start/End: Original strand, 21713237 - 21713361
Alignment:
Q  56 tgacttaagtcatgcataaaatacaatgtgcgttagttaagttacgcatcgtgacttaactaacgcaggggtaatttggacaaggctgcagggcgcgagc 155  Q
    ||||||||| || ||||| | || || ||||| ||||||| | ||||  ||||||||||||| |||| ||| | ||| | || |||||||||||||||||    
T  21713237 tgacttaagccacgcatagattataaggtgcgctagttaaatcacgctgcgtgacttaactagcgcaagggcatttttggcatggctgcagggcgcgagc 21713336  T
Q  156 aaaatgtgttggggaaagagcagaa 180  Q
    ||||||||  |||  ||||||||||    
T  21713337 aaaatgtgcagggtgaagagcagaa 21713361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 25146948 - 25146879
Alignment:
Q  109 acttaactaacgcaggggtaatttggacaaggctgcagggcgcgagcaaaatgtgttggggaaagagcag 178  Q
    ||||||||  |||||||||||||| | ||| |||||||||||||||| ||| ||||||||  ||||||||    
T  25146948 acttaacttgcgcaggggtaatttaggcaacgctgcagggcgcgagcgaaaagtgttgggtgaagagcag 25146879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 177
Target Start/End: Complemental strand, 38131419 - 38131332
Alignment:
Q  90 agttaagttacgcatcgtgacttaactaacgcaggggtaatttggacaaggctgcagggcgcgagcaaaatgtgttggggaaagagca 177  Q
    |||||||| | ||| ||||||||||||  |||| ||| | ||| | || ||||||||||||||||||||||||| ||||  |||||||    
T  38131419 agttaagtcatgcagcgtgacttaacttgcgcaagggcatttttggcatggctgcagggcgcgagcaaaatgtgctgggtgaagagca 38131332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 84 - 122
Target Start/End: Complemental strand, 9958241 - 9958203
Alignment:
Q  84 tgcgttagttaagttacgcatcgtgacttaactaacgca 122  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  9958241 tgcgttagttaagtcacgcagcgtgacttaactaacgca 9958203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 1939434 - 1939475
Alignment:
Q  139 ggctgcagggcgcgagcaaaatgtgttggggaaagagcagaa 180  Q
    ||||||||||||||||||||||||| |||| | |||||||||    
T  1939434 ggctgcagggcgcgagcaaaatgtgctgggtagagagcagaa 1939475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 154
Target Start/End: Complemental strand, 9957628 - 9957579
Alignment:
Q  105 cgtgacttaactaacgcaggggtaatttggacaaggctgcagggcgcgag 154  Q
    |||||||||||||||||| | ||||||| | || ||||||||||||||||    
T  9957628 cgtgacttaactaacgcaagagtaatttaggcatggctgcagggcgcgag 9957579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 32304773 - 32304814
Alignment:
Q  31 tcagcgtgagttaactcacgcagcctgacttaagtcatgcat 72  Q
    ||||||||||||||||||| |||| |||||||||||| ||||    
T  32304773 tcagcgtgagttaactcacccagcatgacttaagtcacgcat 32304814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 37576673 - 37576625
Alignment:
Q  20 ataataataactcagcgtgagttaactcacgcagcctgacttaagtcatg 69  Q
    ||||| |||||| |||||| ||||||||||||||| ||||||||||||||    
T  37576673 ataattataact-agcgtgtgttaactcacgcagcgtgacttaagtcatg 37576625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 8e-20; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 32 - 154
Target Start/End: Complemental strand, 36933034 - 36932912
Alignment:
Q  32 cagcgtgagttaactcacgcagcctgacttaagtcatgcataaaatacaatgtgcgttagttaagttacgcatcgtgacttaactaacgcaggggtaatt 131  Q
    |||||||| |||| |||||||||   | |||| | | ||||||||||||||||||||||||||||| || |   |||||||||||||  |||||||||||    
T  36933034 cagcgtgacttaattcacgcagcgctatttaaattacgcataaaatacaatgtgcgttagttaagtcacactgtgtgacttaactaatacaggggtaatt 36932935  T
Q  132 tggacaaggctgcagggcgcgag 154  Q
    ||| ||||||||||| |||||||    
T  36932934 tgggcaaggctgcagagcgcgag 36932912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 4412641 - 4412600
Alignment:
Q  139 ggctgcagggcgcgagcaaaatgtgttggggaaagagcagaa 180  Q
    ||||||||||||||||||||||||| |||| |||||||||||    
T  4412641 ggctgcagggcgcgagcaaaatgtgctgggtaaagagcagaa 4412600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 270 - 335
Target Start/End: Complemental strand, 8765101 - 8765036
Alignment:
Q  270 catattttgtctgtcatctctcaggacaaatccgtgttcatcaccgactctgctgtgactggtaaa 335  Q
    ||||||||||||| |||| |||| | |||||||||||||||||| | |||||||| || |||||||    
T  8765101 catattttgtctgccatccctcaaggcaaatccgtgttcatcacaggctctgctgggattggtaaa 8765036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 155
Target Start/End: Complemental strand, 10529006 - 10528885
Alignment:
Q  34 gcgtgagttaactcacgcagcctgacttaagtcatgcataaaatacaatgtgcgttagttaagttacgcatcgtgacttaactaacgcaggggtaatttg 133  Q
    ||||||||||| |||||| || |  ||||||| | ||| ||||||||| |||||  |||||||  ||||  | |||||||||| |||||||||||||||     
T  10529006 gcgtgagttaattcacgctgcgttgcttaagtgacgcacaaaatacaacgtgcgcaagttaagacacgctgcctgacttaacttacgcaggggtaattta 10528907  T
Q  134 gacaaggctgcagggcgcgagc 155  Q
      ||| |||||||||| |||||    
T  10528906 agcaacgctgcagggcccgagc 10528885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 177
Target Start/End: Original strand, 34471664 - 34471785
Alignment:
Q  56 tgacttaagtcatgcataaaatacaatgtgcgttagttaagttacgcatcgtgacttaactaacgcaggggtaatttggacaaggctgcagggcgcgagc 155  Q
    |||||||||||| |||||   || || |||||  |||||||| ||||| ||||||||||||  ||||  |  | ||| |||| |||||||||||||||||    
T  34471664 tgacttaagtcacgcatagtttataaggtgcgcaagttaagtcacgcagcgtgacttaacttgcgcaaagacatttttgacatggctgcagggcgcgagc 34471763  T
Q  156 aaaatgtgttggggaaagagca 177  Q
    ||||||| |||||  |||||||    
T  34471764 aaaatgtattgggtgaagagca 34471785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 36701884 - 36701921
Alignment:
Q  15 ggagtataataataactcagcgtgagttaactcacgca 52  Q
    |||||| |||||||||||||||||||||||||||||||    
T  36701884 ggagtacaataataactcagcgtgagttaactcacgca 36701921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 7130188 - 7130148
Alignment:
Q  32 cagcgtgagttaactcacgcagcctgacttaagtcatgcat 72  Q
    ||||||||||||||||||||||| |||||||||||| ||||    
T  7130188 cagcgtgagttaactcacgcagcgtgacttaagtcacgcat 7130148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 67
Target Start/End: Original strand, 24190936 - 24190971
Alignment:
Q  32 cagcgtgagttaactcacgcagcctgacttaagtca 67  Q
    ||||||||||||||||||||||| ||||||||||||    
T  24190936 cagcgtgagttaactcacgcagcgtgacttaagtca 24190971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 150
Target Start/End: Original strand, 36701901 - 36702000
Alignment:
Q  51 cagcctgacttaagtcatgcataaaatacaatgtgcgttagttaagttacgcatcgtgacttaactaacgcaggggtaatttggacaaggctgcagggcg 150  Q
    |||| ||| |||| ||| |||||||||||||   ||||||||||| | ||||  | |||||||||||||||| || |||||| |||| | ||||||||||    
T  36701901 cagcgtgagttaactcacgcataaaatacaacacgcgttagttaaatcacgctgcatgacttaactaacgcaaggataatttagacatgactgcagggcg 36702000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 20669626 - 20669560
Alignment:
Q  111 ttaactaacgcaggggtaatttggacaaggctgcagggcgcgagcaaaatgtgttggggaaagagca 177  Q
    |||||||||||| ||||| ||||||||||  ||||||||| |||| ||| |||  ||||||||||||    
T  20669626 ttaactaacgcatgggtattttggacaagcttgcagggcgtgagcgaaaagtgcaggggaaagagca 20669560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 91 - 177
Target Start/End: Original strand, 20669807 - 20669893
Alignment:
Q  91 gttaagttacgcatcgtgacttaactaacgcaggggtaatttggacaaggctgcagggcgcgagcaaaatgtgttggggaaagagca 177  Q
    ||||||| ||||| ||||||||||||  | || ||||||||||| | | |||||||||||||||| ||| |||  |||| |||||||    
T  20669807 gttaagtcacgcagcgtgacttaacttgcacaagggtaatttgggctatgctgcagggcgcgagcgaaaagtgcagggggaagagca 20669893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 36701340 - 36701294
Alignment:
Q  105 cgtgacttaactaacgcaggggtaatttggacaaggctgcagggcgc 151  Q
    |||||||||||||||||| ||||||||| | || |||||||||||||    
T  36701340 cgtgacttaactaacgcatgggtaatttaggcatggctgcagggcgc 36701294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 34743270 - 34743311
Alignment:
Q  26 ataactcagcgtgagttaactcacgcagcctgacttaagtca 67  Q
    ||||| || |||||||||||||||||||| ||||||||||||    
T  34743270 ataacccaacgtgagttaactcacgcagcatgacttaagtca 34743311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 37227031 - 37226990
Alignment:
Q  139 ggctgcagggcgcgagcaaaatgtgttggggaaagagcagaa 180  Q
    ||||||||||||||||||||||||| ||||  ||||||||||    
T  37227031 ggctgcagggcgcgagcaaaatgtgctgggtgaagagcagaa 37226990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 8e-20; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 45801927 - 45802025
Alignment:
Q  56 tgacttaagtcatgcataaaatacaatgtgcgttagttaagttacgcatcgtgacttaactaacgcaggggtaatttggacaaggctgcagggcgcgag 154  Q
    |||||||||||| ||||||||||||| ||||||||||||||| | |   |||||||||||||||||| ||||||||| | || ||||||||| ||||||    
T  45801927 tgacttaagtcacgcataaaatacaacgtgcgttagttaagtcatgttgcgtgacttaactaacgcaagggtaatttaggcatggctgcaggacgcgag 45802025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 83 - 183
Target Start/End: Original strand, 7956360 - 7956460
Alignment:
Q  83 gtgcgttagttaagttacgcatcgtgacttaactaacgcaggggtaatttggacaaggctgcagggcgcgagcaaaatgtgttggggaaagagcagaaat 182  Q
    ||||| ||||||||| | ||  ||||||||||||| |||||||||| ||| | ||| ||| | ||| | |||||||||||||||||| ||||||||||||    
T  7956360 gtgcgctagttaagtcatgctgcgtgacttaactagcgcaggggtagtttaggcaaagctactgggtgggagcaaaatgtgttgggggaagagcagaaat 7956459  T
Q  183 c 183  Q
    |    
T  7956460 c 7956460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 2182595 - 2182683
Alignment:
Q  90 agttaagttacgcatcgtgacttaactaacgcaggggtaatttggacaaggctgcagggcgcgagcaaaatgtgttggggaaagagcag 178  Q
    |||||||| ||||| |||||||||||| ||||| ||| | |||  ||| ||||||| || |||||||||||||||||||  ||||||||    
T  2182595 agttaagtcacgcagcgtgacttaacttacgcaagggcatttttaacatggctgcatggtgcgagcaaaatgtgttgggtgaagagcag 2182683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 84 - 163
Target Start/End: Complemental strand, 23029634 - 23029555
Alignment:
Q  84 tgcgttagttaagttacgcatcgtgacttaactaacgcaggggtaatttggacaaggctgcagggcgcgagcaaaatgtg 163  Q
    ||||| |||||||| ||||  ||||||||||||| |||| ||| | ||| | || |||||||||||||||||||||||||    
T  23029634 tgcgtgagttaagtcacgctgcgtgacttaactagcgcaagggcatttttggcatggctgcagggcgcgagcaaaatgtg 23029555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 36182819 - 36182889
Alignment:
Q  84 tgcgttagttaagttacgcatcgtgacttaactaacgcaggggtaatttggacaaggctgcagggcgcgag 154  Q
    ||||| |||||||| ||||| |||||||||||| ||||||||  | |||||||| ||||| ||||||||||    
T  36182819 tgcgtgagttaagtcacgcagcgtgacttaactcacgcagggtcattttggacatggctgtagggcgcgag 36182889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 167
Target Start/End: Original strand, 29523163 - 29523296
Alignment:
Q  34 gcgtgagttaactcacgcagcctgacttaagtcatgcataaaatacaatgtgcgttagttaagttacgcatcgtgacttaactaacgcaggggtaatttg 133  Q
    |||| ||||||||||||| ||   |||||||| |  || ||||||||| |||||  |||||||  | ||| ||||||||||||  ||||||||||||||     
T  29523163 gcgtaagttaactcacgctgcgctacttaagtgacacacaaaatacaacgtgcgcaagttaagacatgcagcgtgacttaacttgcgcaggggtaattta 29523262  T
Q  134 gacaaggctgcagggcgcgagcaaaatgtgttgg 167  Q
    | |||  ||||| ||||||||| ||| |||||||    
T  29523263 ggcaacactgcaaggcgcgagcgaaaagtgttgg 29523296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 163
Target Start/End: Complemental strand, 48086857 - 48086750
Alignment:
Q  56 tgacttaagtcatgcataaaatacaatgtgcgttagttaagttacgcatcgtgacttaactaacgcaggggtaatttggacaaggctgcagggcgcgagc 155  Q
    |||||||||||||||| |   || || |||||  |||||||| |||||  |||||||||||  |||| ||||| ||| |||| ||||||||||||| | |    
T  48086857 tgacttaagtcatgcagaggttataaggtgcgcaagttaagtcacgcagtgtgacttaacttgcgcaagggtatttttgacatggctgcagggcgcaatc 48086758  T
Q  156 aaaatgtg 163  Q
    ||||||||    
T  48086757 aaaatgtg 48086750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 84 - 154
Target Start/End: Complemental strand, 36182857 - 36182787
Alignment:
Q  84 tgcgttagttaagttacgcatcgtgacttaactaacgcaggggtaatttggacaaggctgcagggcgcgag 154  Q
    ||||| |||||||| ||||  |||||||||||| ||||||||  | |||||||| |||| |||||||||||    
T  36182857 tgcgtgagttaagtcacgctgcgtgacttaactcacgcagggtcattttggacatggctacagggcgcgag 36182787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 126
Target Start/End: Original strand, 31119446 - 31119535
Alignment:
Q  37 tgagttaactcacgcagcctgacttaagtcatgcataaaatacaatgtgcgttagttaagttacgcatcgtgacttaactaacgcagggg 126  Q
    |||||||||||||||  |   |||||||||| || |||| ||||| ||||||||||||||| || || ||||||||||||||||||||||    
T  31119446 tgagttaactcacgccacgctacttaagtcacgcgtaaattacaacgtgcgttagttaagtcacacaacgtgacttaactaacgcagggg 31119535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 51 - 150
Target Start/End: Complemental strand, 36073772 - 36073673
Alignment:
Q  51 cagcctgacttaagtcatgcataaaatacaatgtgcgttagttaagttacgcatcgtgacttaactaacgcaggggtaatttggacaaggctgcagggcg 150  Q
    |||| ||||||||  || |||||||||| || |||| |||||||||||||||  | | |||||| ||||||| || |||||| ||||| |||||||||||    
T  36073772 cagcgtgacttaacccacgcataaaatataacgtgcattagttaagttacgctgcataacttaattaacgcatggttaatttagacaaagctgcagggcg 36073673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 180
Target Start/End: Complemental strand, 11815603 - 11815457
Alignment:
Q  34 gcgtgagttaactcacgcagcctgacttaagtcatgcataaaatacaatgtgcgttagttaagttacgcatcgtgacttaactaacgcaggggtaatttg 133  Q
    |||||||||||||||||| ||   |||||||| |  || |||||| || |||||  |||||||  ||||| |||| |||||||  |||| |||||||||     
T  11815603 gcgtgagttaactcacgctgcgctacttaagtgactcacaaaatataacgtgcgcaagttaagacacgcagcgtgtcttaacttgcgcaagggtaattta 11815504  T
Q  134 gacaaggctgcagggcgcgagcaaaatgtgttggggaaagagcagaa 180  Q
    | ||| |||||||||||||||| |||  || ||||  ||||||||||    
T  11815503 ggcaacgctgcagggcgcgagcgaaaactgatgggtgaagagcagaa 11815457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 20147352 - 20147290
Alignment:
Q  109 acttaactaacgcaggggtaatttggacaaggctgcagggcgcgagcaaaatgtgttggggaa 171  Q
    |||||||||||||| ||| | ||||| ||||||||| |||||||||||||| ||| |||||||    
T  20147352 acttaactaacgcatgggcattttgggcaaggctgctgggcgcgagcaaaaagtgctggggaa 20147290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 33710951 - 33710910
Alignment:
Q  31 tcagcgtgagttaactcacgcagcctgacttaagtcatgcat 72  Q
    |||||||||||||||||||||||| |||||||||||| ||||    
T  33710951 tcagcgtgagttaactcacgcagcgtgacttaagtcacgcat 33710910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 171
Target Start/End: Original strand, 9829606 - 9829638
Alignment:
Q  139 ggctgcagggcgcgagcaaaatgtgttggggaa 171  Q
    |||||||||||||||||||||||||||||||||    
T  9829606 ggctgcagggcgcgagcaaaatgtgttggggaa 9829638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 177
Target Start/End: Complemental strand, 28030504 - 28030432
Alignment:
Q  105 cgtgacttaactaacgcaggggtaatttggacaaggctgcagggcgcgagcaaaatgtgttggggaaagagca 177  Q
    ||||||||||||  |||||||||||||| | ||| |||||||||||||||| ||| ||| ||||  |||||||    
T  28030504 cgtgacttaacttgcgcaggggtaatttaggcaacgctgcagggcgcgagcgaaaagtgctgggtgaagagca 28030432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 177
Target Start/End: Original strand, 29132734 - 29132828
Alignment:
Q  83 gtgcgttagttaagttacgcatcgtgacttaactaacgcaggggta-atttggacaaggctgcagggcgcgagcaaaatgtgttggggaaagagca 177  Q
    ||||||||||||||| |||   |||||||||||||||||||||| | ||| ||| | ||||||||| ||||||| ||||||| ||||  |||||||    
T  29132734 gtgcgttagttaagtcacgttgcgtgacttaactaacgcaggggcatattagga-atggctgcaggacgcgagcgaaatgtgctgggtgaagagca 29132828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 84 - 122
Target Start/End: Complemental strand, 29132773 - 29132735
Alignment:
Q  84 tgcgttagttaagttacgcatcgtgacttaactaacgca 122  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  29132773 tgcgttagttaagtcacgcaacgtgacttaactaacgca 29132735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 147
Target Start/End: Complemental strand, 30398246 - 30398189
Alignment:
Q  90 agttaagttacgcatcgtgacttaactaacgcaggggtaatttggacaaggctgcagg 147  Q
    |||||||| |||||||||||||||||| |||||||  || ||| |||| |||||||||    
T  30398246 agttaagtcacgcatcgtgacttaactcacgcaggattattttagacatggctgcagg 30398189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 34719 - 34807
Alignment:
Q  34 gcgtgagttaactcacgcagcctgacttaagtcatgcataaaatacaatgtgcgttagttaagttacgcatcgtgacttaactaacgca 122  Q
    ||||||||||||||| || ||   |||||||||| ||||||| ||||| ||||||||||||||| ||||  ||||||||| ||||||||    
T  34719 gcgtgagttaactcatgccgcactacttaagtcacgcataaattacaacgtgcgttagttaagtcacgctgcgtgacttatctaacgca 34807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 180
Target Start/End: Original strand, 4362363 - 4362509
Alignment:
Q  34 gcgtgagttaactcacgcagcctgacttaagtcatgcataaaatacaatgtgcgttagttaagttacgcatcgtgacttaactaacgcaggggtaatttg 133  Q
    |||||||||||||||||| ||   |||||||| |  || |||||| || |||||  |||||||  ||||| ||||||||||||  |||| |||||||||     
T  4362363 gcgtgagttaactcacgctgcgctacttaagtgacacacaaaatataacgtgcgcaagttaaggcacgcaacgtgacttaacttgcgcaagggtaattta 4362462  T
Q  134 gacaaggctgcagggcgcgagcaaaatgtgttggggaaagagcagaa 180  Q
    | ||| |||||||||||||||| ||| ||| |||   ||||||||||    
T  4362463 ggcaacgctgcagggcgcgagcgaaaagtgctggatgaagagcagaa 4362509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 183
Target Start/End: Complemental strand, 13312574 - 13312474
Alignment:
Q  83 gtgcgttagttaagttacgcatcgtgacttaactaacgcaggggtaatttggacaaggctgcagggcgcgagcaaaatgtgttggggaaagagcagaaat 182  Q
    ||||||||||||||| ||||| |||||||||||||||||| ||| | ||| |||||  | || ||| | |||  ||||||| ||||| ||||||| ||||    
T  13312574 gtgcgttagttaagtcacgcagcgtgacttaactaacgcatgggcattttcgacaaatcagctgggtgggagtgaaatgtgctgggggaagagcaaaaat 13312475  T
Q  183 c 183  Q
    |    
T  13312474 c 13312474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 32879749 - 32879713
Alignment:
Q  31 tcagcgtgagttaactcacgcagcctgacttaagtca 67  Q
    |||||||||||||||||||||||| ||||||||||||    
T  32879749 tcagcgtgagttaactcacgcagcgtgacttaagtca 32879713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 180
Target Start/End: Original strand, 5741530 - 5741599
Alignment:
Q  111 ttaactaacgcaggggtaatttggacaaggctgcagggcgcgagcaaaatgtgttggggaaagagcagaa 180  Q
    |||||||||||||| ||| ||||| || ||||||||||||||||| ||| |||  |||  ||||||||||    
T  5741530 ttaactaacgcaggtgtattttggtcatggctgcagggcgcgagcgaaaagtgcagggtgaagagcagaa 5741599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 35018808 - 35018849
Alignment:
Q  139 ggctgcagggcgcgagcaaaatgtgttggggaaagagcagaa 180  Q
    ||||||||| ||||||||||||||||||||  ||||||||||    
T  35018808 ggctgcaggacgcgagcaaaatgtgttgggtgaagagcagaa 35018849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 36653806 - 36653878
Alignment:
Q  111 ttaactaacgcaggggtaatttggacaaggctgcagggcgcgagcaaaatgtgttggggaaagagcagaaatc 183  Q
    ||||||||||||||| || ||| || | | | |||| |||||||||||||||||||||| |||||||||||||    
T  36653806 ttaactaacgcagggatatttttgaaatgaccgcagagcgcgagcaaaatgtgttgggggaagagcagaaatc 36653878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 180
Target Start/End: Complemental strand, 39476543 - 39476419
Alignment:
Q  56 tgacttaagtcatgcataaaatacaatgtgcgttagttaagttacgcatcgtgacttaactaacgcaggggtaatttggacaaggctgcagggcgcgagc 155  Q
    |||||||||||| ||||| | || || ||||| ||||||||| ||||  | |||||||||||||| | ||| | |||  ||| ||||||| |||||||||    
T  39476543 tgacttaagtcacgcatagattataaggtgcgctagttaagtcacgctgcatgacttaactaacgtaagggcatttttaacatggctgcaaggcgcgagc 39476444  T
Q  156 aaaatgtgttggggaaagagcagaa 180  Q
    ||||||||  |||  ||||||||||    
T  39476443 aaaatgtgcagggtgaagagcagaa 39476419  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 67
Target Start/End: Original strand, 8231896 - 8231930
Alignment:
Q  33 agcgtgagttaactcacgcagcctgacttaagtca 67  Q
    |||| ||||||||||||||||||||||||||||||    
T  8231896 agcgcgagttaactcacgcagcctgacttaagtca 8231930  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 72
Target Start/End: Original strand, 42629201 - 42629239
Alignment:
Q  34 gcgtgagttaactcacgcagcctgacttaagtcatgcat 72  Q
    ||||||||||||||| ||||| |||||||||||||||||    
T  42629201 gcgtgagttaactcatgcagcgtgacttaagtcatgcat 42629239  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 178
Target Start/End: Complemental strand, 2740650 - 2740506
Alignment:
Q  34 gcgtgagttaactcacgcagcctgacttaagtcatgcataaaatacaatgtgcgttagttaagttacgcatcgtgacttaactaacgcaggggtaatttg 133  Q
    |||||||||||||||||| ||   ||||||||   ||| ||||||||| |||||  |||||||  || |  ||||||||||||  ||||| ||||||||     
T  2740650 gcgtgagttaactcacgctgcgctacttaagtggcgcacaaaatacaacgtgcgcaagttaagacacactgcgtgacttaacttgcgcagaggtaattta 2740551  T
Q  134 gacaaggctgcagggcgcgagcaaaatgtgttggggaaagagcag 178  Q
    | ||| |||||||||||||| | ||| ||||||||  ||||||||    
T  2740550 ggcaacgctgcagggcgcgatcgaaaagtgttgggtgaagagcag 2740506  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 160
Target Start/End: Original strand, 7084044 - 7084148
Alignment:
Q  56 tgacttaagtcatgcataaaatacaatgtgcgttagttaagttacgcatcgtgacttaactaacgcaggggtaatttggacaaggctgcagggcgcgagc 155  Q
    |||||||||||| ||||| | || || ||||| ||||||||| ||||  |||||||||||||  ||| ||||| ||| | || | || ||||||||||||    
T  7084044 tgacttaagtcacgcatagattataaggtgcgctagttaagtcacgctgcgtgacttaactagtgcaagggtatttttggcatgacttcagggcgcgagc 7084143  T
Q  156 aaaat 160  Q
    |||||    
T  7084144 aaaat 7084148  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 17092555 - 17092594
Alignment:
Q  32 cagcgtgagttaactcacgcagcctgacttaagtcatgca 71  Q
    ||||||||||||||||||||| | ||||||||||||||||    
T  17092555 cagcgtgagttaactcacgcaacgtgacttaagtcatgca 17092594  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 72
Target Start/End: Complemental strand, 14410292 - 14410254
Alignment:
Q  34 gcgtgagttaactcacgcagcctgacttaagtcatgcat 72  Q
    ||||||||||||||||||||| |||||||||||| ||||    
T  14410292 gcgtgagttaactcacgcagcgtgacttaagtcacgcat 14410254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 177
Target Start/End: Complemental strand, 10397914 - 10397845
Alignment:
Q  109 acttaactaacgcaggggtaatttggacaaggctgcagggcgcgagc-aaaatgtgttggggaaagagca 177  Q
    |||||||||||||| | | | ||||| ||||||||| |||||||||| |||| ||||||||| |||||||    
T  10397914 acttaactaacgcatgagcattttgggcaaggctgctgggcgcgagcaaaaaagtgttgggggaagagca 10397845  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 168
Target Start/End: Complemental strand, 35048761 - 35048704
Alignment:
Q  111 ttaactaacgcaggggtaatttggacaaggctgcagggcgcgagcaaaatgtgttggg 168  Q
    |||||||||||| |||||| || || | |||||||||| |||||||||||||| ||||    
T  35048761 ttaactaacgcaagggtaaatttgaaacggctgcagggagcgagcaaaatgtgctggg 35048704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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