View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17259_low_23 (Length: 441)
Name: NF17259_low_23
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17259_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 10 - 423
Target Start/End: Complemental strand, 44225307 - 44224894
Alignment:
| Q |
10 |
gcagagatcaaccatacagatttgtaactgttactcaattcgctgaggcatttcaatccttccatattggtaggaaacttgctgaggagctttccgtacc |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44225307 |
gcagagatcaaccatacagatttgtaactgttactcaattcgctgaggcgtttcaatccttccatattggtaggaaacttgctgaggagctttccgtacc |
44225208 |
T |
|
| Q |
110 |
atttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatttg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44225207 |
atttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatttg |
44225108 |
T |
|
| Q |
210 |
ctcatgaaaaggaattcgtttgtttacatcttcaagctaactcaggtttggaatctatcccgctcttttataaaagtgaaatagaaattctttttcattt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44225107 |
ctcatgaaaaggaattcgtttgtttacatcttcaagctaactcaggtttggaatctatcccgctcttttatataagtgaaatagaaattctttttcattt |
44225008 |
T |
|
| Q |
310 |
atacattcatgaccatgattttctgtgacataactgtttactcttcatgctttgtttttcagcttttcatcatggcattgatagcaatgacactgttttt |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44225007 |
atacattcatgaccatgattttctgtgacataactgtttactcttcatgctttgtttttcagcttttcatcatggcattgatagcaatgacactgttttt |
44224908 |
T |
|
| Q |
410 |
tcggactgagatgc |
423 |
Q |
| |
|
|||||||||||||| |
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| T |
44224907 |
tcggactgagatgc |
44224894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 10 - 423
Target Start/End: Complemental strand, 44236121 - 44235704
Alignment:
| Q |
10 |
gcagagatcaaccatacagatttgtaactgttactcaattcgctgaggcatttcaatccttccatattggtaggaaacttgctgaggagctttccgtacc |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44236121 |
gcagagatcaaccatacagatttgtaactgttactcaattcgctgaggcgtttcaatccttccatattggtaggaaacttgctgaggagctttccgtacc |
44236022 |
T |
|
| Q |
110 |
atttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatttg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44236021 |
atttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatttg |
44235922 |
T |
|
| Q |
210 |
ctcatgaaaaggaattcgtttgtttacatcttcaagctaactcaggtttggaatctatcccgctc-ttttataaa---agtgaaatagaaattctttttc |
305 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | || |||| |||||||||| |
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|
| T |
44235921 |
ctcatgaaaagaaattcctttgtttacatcttcaagctaactcaggtttggaatctatcccgctctttttataaatataagcaagtagatattctttttc |
44235822 |
T |
|
| Q |
306 |
atttatacattcatgaccatgattttctgtgacataactgtttactcttcatgctttgtttttcagcttttcatcatggcattgatagcaatgacactgt |
405 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44235821 |
atttatacattcatcaccatgattttctgtgacataacggtttgttcttcatgctttgtttttcagcttttcatcatggcattgatagcaatgacactgt |
44235722 |
T |
|
| Q |
406 |
tttttcggactgagatgc |
423 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
44235721 |
tttttcggactgagatgc |
44235704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 10 - 423
Target Start/End: Complemental strand, 44213146 - 44212728
Alignment:
| Q |
10 |
gcagagatcaaccatacagatttgtaactgttactcaattcgctgaggcatttcaatccttccatattggtaggaaacttgctgaggagctttccgtacc |
109 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||| || |||||||||||||| |||||||||||| ||||||||||||||||||||||| |||| |
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|
| T |
44213146 |
gcagagatcaaccataccgatatgtaactgttactcaatttgccgaggcatttcaatcattccatattggtgggaaacttgctgaggagctttccatacc |
44213047 |
T |
|
| Q |
110 |
atttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatttg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44213046 |
atttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatttg |
44212947 |
T |
|
| Q |
210 |
ctcatgaaaaggaattcgtttgtttacatcttcaagctaactcaggtttggaatctatcccgctctttt------ataaaagtgaaatagaaattctttt |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||| ||||||| |||||| |
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|
| T |
44212946 |
ctcatgaaaaggaattcgtttgtttacatcttcaagctaactcaggtttgtaatctatcccgctcttttttataaatataagt-aaatagattatctttt |
44212848 |
T |
|
| Q |
304 |
tcatttatacattcatgaccatgattttctgtgacataactgtttactcttcatgctttgtttttcagcttttcatcatggcattgatagcaatgacact |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
44212847 |
tcatttatacattcatgaccatgattttctgtgacataacggttttctcttcatgctttgtttttcagcttttcatcatggcattgattgcaatgacact |
44212748 |
T |
|
| Q |
404 |
gttttttcggactgagatgc |
423 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
44212747 |
gttttttcggactgagatgc |
44212728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 2884632 - 2884858
Alignment:
| Q |
19 |
aaccatacagatttgtaactgttactcaattcgctgaggcatttcaatccttccatattggtaggaaacttgctgaggagctttccgtaccatttgacaa |
118 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||||||||||| | |||| |||| |||||| | || |||||| | | ||||||||||| |
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|
| T |
2884632 |
aaccatacaggtttgtaactgttactcaatttgctgaggcatttcaatcataccatgttggaaggaaaacaggagatgagcttgcaattccatttgacaa |
2884731 |
T |
|
| Q |
119 |
gacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatttgctcatgaaa |
218 |
Q |
| |
|
| | |||| |||||||| || || || || ||| |||| ||| | ||||||| || || |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2884732 |
gtctaagaatcatccagcagcattaacaactaaaaagtacggtgttaacaagaaagaactgttaaaggctaacttctcaagagagtatttgcttatgaaa |
2884831 |
T |
|
| Q |
219 |
aggaattcgtttgtttacatcttcaag |
245 |
Q |
| |
|
|| ||||| |||||||||||||||||| |
|
|
| T |
2884832 |
agaaattcctttgtttacatcttcaag |
2884858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 2899928 - 2899702
Alignment:
| Q |
19 |
aaccatacagatttgtaactgttactcaattcgctgaggcatttcaatccttccatattggtaggaaacttgctgaggagctttccgtaccatttgacaa |
118 |
Q |
| |
|
|||||||||| ||| |||||||||||||||| ||||||||||||||||| | |||| |||| |||||| || |||||| | | ||||||||||| |
|
|
| T |
2899928 |
aaccatacaggtttttaactgttactcaatttgctgaggcatttcaatcataccatgttggaaggaaaacaagagatgagcttgcaattccatttgacaa |
2899829 |
T |
|
| Q |
119 |
gacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatttgctcatgaaa |
218 |
Q |
| |
|
| | |||| |||||||| || || || || ||| |||| ||| | ||||||| || || ||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
2899828 |
gtctaagaatcatccagcagcattaacaactaaaaagtacggtgttaacaagaaagaactgttaaaggctaacttctcaagagaatatttgcttatgaaa |
2899729 |
T |
|
| Q |
219 |
aggaattcgtttgtttacatcttcaag |
245 |
Q |
| |
|
|||||||| |||||||||||||||||| |
|
|
| T |
2899728 |
aggaattcctttgtttacatcttcaag |
2899702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 108 - 226
Target Start/End: Original strand, 2874853 - 2874971
Alignment:
| Q |
108 |
ccatttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatt |
207 |
Q |
| |
|
|||||||||||| | || | |||||||| || || || || ||| |||||||| | ||||||| ||| || |||||||||||| |||||||||||| || |
|
|
| T |
2874853 |
ccatttgacaagtcaaataatcatccagcagcattaacaactaaaaagtatggtgttaacaagaaggaactattaaaggctaacatctcaagagagtttt |
2874952 |
T |
|
| Q |
208 |
tgctcatgaaaaggaattc |
226 |
Q |
| |
|
|||| |||||||| ||||| |
|
|
| T |
2874953 |
tgcttatgaaaagaaattc |
2874971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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