View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17259_low_25 (Length: 411)
Name: NF17259_low_25
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17259_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 13 - 319
Target Start/End: Complemental strand, 39790046 - 39789741
Alignment:
| Q |
13 |
aatattagaatatttgaaagaattagataccaaagatcttaggaccgaccatgctcgctatgacgcatttggttaaggattgactagcctatttatgcgg |
112 |
Q |
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| T |
39790046 |
aatattagaatatttaaaagaattagataccaaaaatcttaggaccgaccatgctcgctatgacgcatttggttaaggattgactagcctatttatgcgg |
39789947 |
T |
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| Q |
113 |
gatgagaaagtaatagcttatgtgtctaggaaacttaatattcgtgaaaggaattataagtcgcatgacttacagttagttgtaggggtgtttgttttta |
212 |
Q |
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| T |
39789946 |
gatgaggaagtaatagcttatgtgtctaggaaacttaatattcatgaaaggaattataagtcgcatgacttacagttagttgtaggggtgtttgttttta |
39789847 |
T |
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| Q |
213 |
agatgtgaagacattatttgtaaaatattgctctttacactttaaaaaatgttcttccacatttgaaaaagacaaaaatacattcaatgacccttaaccc |
312 |
Q |
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| T |
39789846 |
agatgtgaagacattatttgtaaaaaattgctctttacactttaaaaaatgttcttccacatttgaaaaagacaaaaatacattcaatga-tcttaatcc |
39789748 |
T |
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| Q |
313 |
gttcact |
319 |
Q |
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| T |
39789747 |
gttcact |
39789741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 321 - 394
Target Start/End: Complemental strand, 39789683 - 39789610
Alignment:
| Q |
321 |
ctacaaacatgaacaacaatataagtaattttgattttaataaatgttgggtggaagatatttctccgaagaat |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39789683 |
ctacaaacatgaacaacaatataagtaattttgattttaataaatgttgggtggaagatatttctccgaagaat |
39789610 |
T |
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