View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17259_low_26 (Length: 404)
Name: NF17259_low_26
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17259_low_26 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 191 - 404
Target Start/End: Complemental strand, 49124171 - 49123958
Alignment:
| Q |
191 |
ttatgaatattaaaatctatgttaacacacttaacatatttacattcttctttgatgaccagaggattagaatatctacatgagcattgttaccctcgag |
290 |
Q |
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| T |
49124171 |
ttatgaatattaaaatctatgttaacacacttaacatatttacattcttctttgatgaccagaggattagaatatctacatgagcattgttaccctcgag |
49124072 |
T |
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| Q |
291 |
tgattcatagagatatgaaatcttcaaatattcttttagatgcaaacttcaatgccaaggtaaaaaactgaatttactatatattttatcttcttccaca |
390 |
Q |
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| T |
49124071 |
tgattcatagagatatgaaatcttcaaatattcttttagatgcaaacttcaatgccaaggtaaaaaactgaatttactatatattttatcttcttccaca |
49123972 |
T |
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| Q |
391 |
aagtattttattca |
404 |
Q |
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|||||||||||||| |
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| T |
49123971 |
aagtattttattca |
49123958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 49124422 - 49124225
Alignment:
| Q |
1 |
ttgtactttcaactaaagaaaatctaaactttcttggaatgtagttatggctttttcaatcacaacattaaccaagtatacaaaattcaaaattacaact |
100 |
Q |
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| T |
49124422 |
ttgtactttcaactaaagaaaatctaaactttcttggaatgtagttaaggctttttcaatcacaacattaaccaagtatacaaaattcaaaattacaact |
49124323 |
T |
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| Q |
101 |
gttaacaaattaatgaacaattccgattggagaagttatagatcgttttcattctgcatcttaaaagttttgtccccttaacaaagtttattatgaat |
198 |
Q |
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| T |
49124322 |
gttaacaaattaatgaacaattccgattggagaagttatagatcgttttcattctgcatcttaaaagttttgtccccttaacaaagtttattatgaat |
49124225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 250 - 357
Target Start/End: Original strand, 4271421 - 4271528
Alignment:
| Q |
250 |
cagaggattagaatatctacatgagcattgttaccctcgagtgattcatagagatatgaaatcttcaaatattcttttagatgcaaacttcaatgccaag |
349 |
Q |
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|||||| ||| ||||||| |||||||| || |||||| |||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4271421 |
cagaggtttaaaatatctgcatgagcactgctaccctgcagtgatccatagagatctgaaatcttctaatattcttttagatgcaaacttcaatgccaag |
4271520 |
T |
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| Q |
350 |
gtaaaaaa |
357 |
Q |
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| T |
4271521 |
gtaaaaaa |
4271528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 250 - 357
Target Start/End: Original strand, 2807765 - 2807872
Alignment:
| Q |
250 |
cagaggattagaatatctacatgagcattgttaccctcgagtgattcatagagatatgaaatcttcaaatattcttttagatgcaaacttcaatgccaag |
349 |
Q |
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| T |
2807765 |
cagaggtttaaaatatctgcatgagcactgctaccctgcagtgatccatagagatctgaaatcttctaatattcttttagatgcaaacttcaatgccaag |
2807864 |
T |
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| Q |
350 |
gtaaaaaa |
357 |
Q |
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|||||||| |
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| T |
2807865 |
gtaaaaaa |
2807872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 30341281 - 30341349
Alignment:
| Q |
29 |
ctttcttggaatgtagttatggctttttcaatcacaacattaaccaagtatacaaaattcaaaattaca |
97 |
Q |
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| T |
30341281 |
ctttcatgcaatgtagttaaggctatttcaattacaactttaaccaagtttacaaagttcaaaattaca |
30341349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 11683266 - 11683218
Alignment:
| Q |
49 |
ggctttttcaatcacaacattaaccaagtatacaaaattcaaaattaca |
97 |
Q |
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|||| ||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
11683266 |
ggctatttcaatcacaactttaacctagtatacaaaattcaaaattaca |
11683218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 18988485 - 18988416
Alignment:
| Q |
28 |
actttcttggaatgtagttatggctttttcaatcacaacattaaccaagtatacaaaattcaaaattaca |
97 |
Q |
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| T |
18988485 |
actttcatgcaatgtagttaaggctatttcaattacaactttaaccaagtttgcaaagttcaaaattaca |
18988416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 23917039 - 23917108
Alignment:
| Q |
28 |
actttcttggaatgtagttatggctttttcaatcacaacattaaccaagtatacaaaattcaaaattaca |
97 |
Q |
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| T |
23917039 |
actttcatgcaatgtagttaaggctatttcaattacaactttaaccaagtttgcaaagttcaaaattaca |
23917108 |
T |
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