View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17259_low_30 (Length: 388)
Name: NF17259_low_30
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17259_low_30 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 91 - 388
Target Start/End: Complemental strand, 35380176 - 35379879
Alignment:
| Q |
91 |
ttagtgtacttacaagcagggttcagtggcccatttgatgatcccccaacatccaactgttagatatgaacatttaggtgnnnnnnnnnnnnnntagaat |
190 |
Q |
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| T |
35380176 |
ttagagtacttacaagcagggttcagtggcccatttgatgatcccccaacatccaactgttagatatgaacatttaggtgaaaaaaataaaaaatagaat |
35380077 |
T |
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| Q |
191 |
aagaaaggtttttcagataattgattttgctaagattctatcaacattttagttgatggtggtcttgcatggtcttttttggaaagattctgctttttat |
290 |
Q |
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| T |
35380076 |
aagaaaggtttttcagataattgattttgctaagattctatcaacattttagttgatggtggttttgcatggtcttttttggaaagattctgctttttaa |
35379977 |
T |
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| Q |
291 |
gtgacaacatactttaactaaaagaaagaaagagcagaaggtgaaagattaattcagtaaaaatggaggggggctactctgaccaacccctcaccttc |
388 |
Q |
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| T |
35379976 |
gtgacaacatactttaactaaaagaaagaaagagcagaaggtgaaagattaattcagtaaaaatggaggggggctcctctgaccaacccttcaccttc |
35379879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 35380231 - 35380169
Alignment:
| Q |
13 |
aatatatattaatgataaggctttgtattaactattaatcatagacttttaaatgttagagta |
75 |
Q |
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| T |
35380231 |
aatatatattaatgataaggctttgtattaactattaattatagacttttaaatgttagagta |
35380169 |
T |
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