View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17259_low_33 (Length: 355)
Name: NF17259_low_33
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17259_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 19 - 345
Target Start/End: Complemental strand, 77120 - 76794
Alignment:
| Q |
19 |
agcataaacaatttaatcactattatgatttttgacaggaatgttgagaacaacaaatttactggttggattcctgaggagttaaaggatataaatagtt |
118 |
Q |
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| T |
77120 |
agcataaacaatttaatcactattatgatttttgacaggaatgttgagaacaacaaatttactggttggattcctgaggagttaaaggatataaatagtt |
77021 |
T |
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| Q |
119 |
tgcagtaagtattatgttacacttattttttgaaggataccgtacttgggttgtatctctaaatttttgttgttaattacaaagaactggaggaaactct |
218 |
Q |
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| T |
77020 |
tgcagtaagtattatgttacacttattttttgaaggataccgtacttgggttgtatctctaaatttttgttgttaattacaaagaactggaggaaactct |
76921 |
T |
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| Q |
219 |
tggaaaactgggccagcaccacctcctcctcccggtacacctcctatcaagcaccattccgaggaaaaggaaggaaaatcatcaaattctcttgttactg |
318 |
Q |
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| T |
76920 |
tggaaaactgggccagcaccacctcctcctcccggtacacctcctatcaagcatcattccgaggaaaaggaaggaaaatcatcaaattctcttgttactg |
76821 |
T |
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| Q |
319 |
gattgattatagctggcattgcctttg |
345 |
Q |
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||||||||||||||||||||||||||| |
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| T |
76820 |
gattgattatagctggcattgcctttg |
76794 |
T |
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