View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17259_low_34 (Length: 355)
Name: NF17259_low_34
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17259_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 10 - 340
Target Start/End: Original strand, 16790134 - 16790464
Alignment:
| Q |
10 |
aggagcagagacggaacatagtgaagggtcgcttgttaaaatcatgtacaatgcagtgactatcaatcagaatcttgtatctcacttcacttatgataaa |
109 |
Q |
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| T |
16790134 |
aggagtagcgaccgaacatagtgaaggatcaattgttaaaatcatgtacaatgcagtgactatcgatcagaaccttgtatctcacttcacttatgataaa |
16790233 |
T |
|
| Q |
110 |
aaggtaaatggttttatattctattttcaactatttgcattgattattttgattttcatctcattgactatgtatattggttctgcagtcattgatcaaa |
209 |
Q |
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| T |
16790234 |
aaggtaaatggttttatattctattttcaactatttgcattgaatattttgattttcatctcattgactatgtatattggttctgcagtcattgatcaaa |
16790333 |
T |
|
| Q |
210 |
ctgttgcggttgcttattcctgcaagttatatctcttcatctcttgttattctaaatgaattgccatcgaaagtcacgttacagaataagaagagaggaa |
309 |
Q |
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| T |
16790334 |
ccgttgcggttgcttattcctgcaagttatatctcttcatctcttgttattctaaatgaattgcccttgaaagtcacgttacagaataagaagagaggaa |
16790433 |
T |
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| Q |
310 |
gatggataacttacaagaataagcaaccaca |
340 |
Q |
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| T |
16790434 |
gatggataacttacaagaataagcaaccaca |
16790464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 23 - 259
Target Start/End: Original strand, 16791553 - 16791788
Alignment:
| Q |
23 |
gaacatagtgaagggtcgcttgttaaaatcatgtacaatgcagtgactatcaatcagaatcttgtatctcacttcacttatgataaaaaggtaaatggtt |
122 |
Q |
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| T |
16791553 |
gaacaaagtgaagggtcacgtattaaaatcatgtacaatgcagtgactatcaatcagaaccatgtatctcacttcacttatgataaaaaggtaagtgatt |
16791652 |
T |
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| Q |
123 |
ttatattctattttcaactatttgcattgattattttgattttcatctcattgactatgtatattggttctgcagtcattgatcaaactgttgcggttgc |
222 |
Q |
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| T |
16791653 |
ttatattctattttcaactatttgcattgattattttgattttcatctcattgattat-tatattgattctgtagtcattgatcaaaccgttgaggttgc |
16791751 |
T |
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| Q |
223 |
ttattcctgcaagttatatctcttcatctcttgttat |
259 |
Q |
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| T |
16791752 |
ttattcctgcaagttatatctcttcttctcttgttat |
16791788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 23 - 262
Target Start/End: Complemental strand, 16616928 - 16616689
Alignment:
| Q |
23 |
gaacatagtgaagggtcgcttgttaaaatcatgtacaatgcagtgactatcaatcagaatcttgtatctcacttcacttatgataaaaaggtaaatggtt |
122 |
Q |
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| T |
16616928 |
gaacaaagtgaaggattacttgtgaaaattatgtacaatgcagtgtctatcaatcaaaaccttgtatctcactttacttctgataaaaaggtaaatgatt |
16616829 |
T |
|
| Q |
123 |
ttatattctattttcaactatttgcattgattattttgattttcatctcattgactatgtatattggttctgcagtcattgatcaaactgttgcggttgc |
222 |
Q |
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| T |
16616828 |
ttatattctgttttgaattatttgcattgaccattttgattttcatctcatcgactatgtatattggttttgtagtcattgatcaaaccactgcggttgt |
16616729 |
T |
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| Q |
223 |
ttattcctgcaagttatatctcttcatctcttgttattct |
262 |
Q |
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| T |
16616728 |
ttattcctgaaagttatccgtcttcctctcttgttattct |
16616689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 41 - 239
Target Start/End: Complemental strand, 16628610 - 16628412
Alignment:
| Q |
41 |
cttgttaaaatcatgtacaatgcagtgactatcaatcagaatcttgtatctcacttcacttatgataaaaaggtaaatggttttatattctattttcaac |
140 |
Q |
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||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||| |||||||||||||||| ||||||||||| ||| || |
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| T |
16628610 |
cttgttaaaatcatgtacaatgcagtgaccatcaatcaaaaccttgtatctcacttcacttccgataaaaaggtaaatgtttttatattctgtttggaat |
16628511 |
T |
|
| Q |
141 |
tatttgcattgattattttgattttcatctcattgactatgtatattggttctgcagtcattgatcaaactgttgcggttgcttattcctgcaagttat |
239 |
Q |
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| T |
16628510 |
tatttgcgttgatcattttgatttttatctcattgactatgaatattacatctgcagtcattgatcaatccgctgcggttacttattcctgcaagttat |
16628412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 41 - 239
Target Start/End: Complemental strand, 16637491 - 16637293
Alignment:
| Q |
41 |
cttgttaaaatcatgtacaatgcagtgactatcaatcagaatcttgtatctcacttcacttatgataaaaaggtaaatggttttatattctattttcaac |
140 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||| |||||||||||||||| ||||||||||| ||| || |
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| T |
16637491 |
cttgttaaaatcatgtacaatgcagtgaccatcaatcaaaaccttgtatctcacttcacttccgataaaaaggtaaatgtttttatattctgtttggaat |
16637392 |
T |
|
| Q |
141 |
tatttgcattgattattttgattttcatctcattgactatgtatattggttctgcagtcattgatcaaactgttgcggttgcttattcctgcaagttat |
239 |
Q |
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||||||| ||||| ||||||||||| ||||||||||||||| ||||| |||||||||||||||||| | | ||||||| |||||||||||||||||| |
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| T |
16637391 |
tatttgcgttgatcattttgatttttatctcattgactatgaatattacatctgcagtcattgatcaatccgctgcggttacttattcctgcaagttat |
16637293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 41 - 273
Target Start/End: Complemental strand, 16792549 - 16792318
Alignment:
| Q |
41 |
cttgttaaaatcatgtacaatgcagtgactatcaatcagaatcttgtatctcacttcacttatgataaaaaggtaaatggttttatattctattttcaac |
140 |
Q |
| |
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||||||||||||||||||| |||| ||||||||||||| | | |||||||||||||| || ||||||||| ||||||| ||||||||| | ||||||| |
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| T |
16792549 |
cttgttaaaatcatgtacattgcaatgactatcaatcaaagccatgtatctcacttcatttctgataaaaatgtaaatgattttatattatgttttcaat |
16792450 |
T |
|
| Q |
141 |
tatttgcattgattattttgattttcatctcattgactatgtatattggttctgcagtcattgatcaaactgttgcggttgcttattcctgcaagttata |
240 |
Q |
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| T |
16792449 |
tattcacattgattattttgattttcatttcattgactatgtatataagttttgca-tcattgatcaaaccatggcggttgctcattcttgtaagttatc |
16792351 |
T |
|
| Q |
241 |
tctcttcatctcttgttattctaaatgaattgc |
273 |
Q |
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| T |
16792350 |
catcttcctctcttcttattctgtatgaattgc |
16792318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 41 - 262
Target Start/End: Complemental strand, 16790637 - 16790416
Alignment:
| Q |
41 |
cttgttaaaatcatgtacaatgcagtgactatcaatcagaatcttgtatctcacttcacttatgat-aaaaaggtaaatggttttatattctattttcaa |
139 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| | | ||||||||| ||||||| |||| ||||| ||||||| ||||||||| | |||| || |
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| T |
16790637 |
cttgttaaaatcatgtacaatgcaatgactatcaatcaaagccatgtatctcatttcacttctgataaaaaatgtaaatgattttatattatcttttgaa |
16790538 |
T |
|
| Q |
140 |
ctatttgcattgattattttgattttcatctcattgactatgtatattggttctgcagtcattgatcaaactgttgcggttgcttattcctgcaagttat |
239 |
Q |
| |
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||||| ||||||||||||||||||| || |||||||||||||| || ||| |||| |||||||||||| ||| |||||||||||| || ||||||| |
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| T |
16790537 |
ctattcacattgattattttgattttgatttcattgactatgtaaataagttttgca-tcattgatcaaatcattgtggttgcttattcttgtaagttat |
16790439 |
T |
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| Q |
240 |
atctcttcatctcttgttattct |
262 |
Q |
| |
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||||| |||||| ||||||| |
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| T |
16790438 |
ccatcttcctctcttcttattct |
16790416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 289 - 337
Target Start/End: Original strand, 16792326 - 16792374
Alignment:
| Q |
289 |
tacagaataagaagagaggaagatggataacttacaagaataagcaacc |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
16792326 |
tacagaataagaagagaggaagatggataacttacaagaatgagcaacc |
16792374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 7e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 45 - 295
Target Start/End: Complemental strand, 38877436 - 38877186
Alignment:
| Q |
45 |
ttaaaatcatgtacaatgcagtgactatcaatcagaatcttgtatctcacttcacttatgataaaaaggtaaatggttttatattctattttcaactatt |
144 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| | |||||||||||||| || |||||||||||||| |||||||||||||||| |||| ||||||| |
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| T |
38877436 |
ttaaaatcatgtacaatgcagtgactatgaatcaggaccttgtatctcacttgacatatgataaaaaggtgaatggttttatattctgttttgaactatt |
38877337 |
T |
|
| Q |
145 |
tgcattgattattttgattttcatctcattgactatgtatattggttctgcagtcattgatcaaactgttgcggttgcttattcctgcaagttatatctc |
244 |
Q |
| |
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|||| |||||||||||||| ||||||| | ||||||||||| ||||| |||||||||||||||| |||| |||||||||||||| |||||||| || |
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| T |
38877336 |
cacattaattattttgatttttatctcataggctatgtatatttgttcttcagtcattgatcaaaccgttgtggttgcttattcctccaagttatccgtc |
38877237 |
T |
|
| Q |
245 |
ttcatctcttgttattctaaatgaattgccatcgaaagtcacgttacagaa |
295 |
Q |
| |
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||| ||||||||||||||| | |||||||| | | |||||| |||| |||| |
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|
| T |
38877236 |
ttcctctcttgttattctagacgaattgccgttggaagtcaggttagagaa |
38877186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 38877219 - 38877267
Alignment:
| Q |
292 |
agaataagaagagaggaagatggataacttacaagaataagcaaccaca |
340 |
Q |
| |
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||||||| |||||||||||| ||||||||| | ||||||||||||||| |
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| T |
38877219 |
agaataacaagagaggaagacggataacttggaggaataagcaaccaca |
38877267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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