View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17259_low_37 (Length: 321)

Name: NF17259_low_37
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17259_low_37
NF17259_low_37
[»] chr5 (8 HSPs)
chr5 (18-301)||(38150924-38151207)
chr5 (25-82)||(38221589-38221646)
chr5 (193-245)||(38454333-38454385)
chr5 (271-305)||(38170617-38170651)
chr5 (193-245)||(38179417-38179469)
chr5 (193-245)||(38191662-38191714)
chr5 (193-245)||(38206641-38206693)
chr5 (193-245)||(38218887-38218939)


Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 301
Target Start/End: Original strand, 38150924 - 38151207
Alignment:
Q  18 acccttgactatagagcagtggaagtataaggagcagtagaagctactcacaattccaaattgttgcaattgataatgcctcatgttttattatttagtg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  38150924 acccttgactatagagcagtggaagtataaggagcagtagaagctactcacaattccaaattgttgcaattgataatgcctcatgtttcgttatttagtg 38151023  T
Q  118 tccgcgatttggttatgttttgcaatagctcacttctttctatacaactctgaatcagatggcacaaagagtatctatgatcaatttttgggcattttat 217  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38151024 tccgcaatttggttatgttttgcaatagctcacttctttctatacaactctgaatcggatggcacaaagagtatctatgatcaatttttgggcattttat 38151123  T
Q  218 accctttaacactaaagattttggaatagaactgtactgtaatagtgagtgaggtttacctttagtttcgtggcaatttgtttt 301  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38151124 accctttaacactaatgattttggaaaagaactgtactgtaatagtgagtgaggtttacctttagtttcgtggcaatttgtttt 38151207  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 38221589 - 38221646
Alignment:
Q  25 actatagagcagtggaagtataaggagcagtagaagctactcacaattccaaattgtt 82  Q
    |||||||||||||||||||||| ||||| |||||| ||||||||||||||||| ||||    
T  38221589 actatagagcagtggaagtatatggagctgtagaacctactcacaattccaaactgtt 38221646  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 38454385 - 38454333
Alignment:
Q  193 tatgatcaatttttgggcattttataccctttaacactaaagattttggaata 245  Q
    ||||||||||||  |||||||||||||| ||||||||||| || |||||||||    
T  38454385 tatgatcaatttgcgggcattttataccgtttaacactaatgagtttggaata 38454333  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 305
Target Start/End: Original strand, 38170617 - 38170651
Alignment:
Q  271 gtttacctttagtttcgtggcaatttgttttctgt 305  Q
    |||||||||||||||||||| ||||||||||||||    
T  38170617 gtttacctttagtttcgtggtaatttgttttctgt 38170651  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 38179469 - 38179417
Alignment:
Q  193 tatgatcaatttttgggcattttataccctttaacactaaagattttggaata 245  Q
    ||||||||||||  ||||||||| |||| ||||||||||| || |||||||||    
T  38179469 tatgatcaatttgcgggcattttgtaccgtttaacactaatgagtttggaata 38179417  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 38191662 - 38191714
Alignment:
Q  193 tatgatcaatttttgggcattttataccctttaacactaaagattttggaata 245  Q
    ||||||||||||  ||||||||| |||| ||||||||||| || |||||||||    
T  38191662 tatgatcaatttgcgggcattttgtaccgtttaacactaatgagtttggaata 38191714  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 38206693 - 38206641
Alignment:
Q  193 tatgatcaatttttgggcattttataccctttaacactaaagattttggaata 245  Q
    ||||||||||||  ||||||||| |||| ||||||||||| || |||||||||    
T  38206693 tatgatcaatttgcgggcattttgtaccgtttaacactaatgagtttggaata 38206641  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 38218887 - 38218939
Alignment:
Q  193 tatgatcaatttttgggcattttataccctttaacactaaagattttggaata 245  Q
    ||||||||||||  ||||||||| |||| ||||||||||| || |||||||||    
T  38218887 tatgatcaatttgcgggcattttgtaccgtttaacactaatgagtttggaata 38218939  T

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