View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17259_low_38 (Length: 311)

Name: NF17259_low_38
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17259_low_38
NF17259_low_38
[»] chr2 (1 HSPs)
chr2 (8-311)||(40802092-40802395)


Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 311
Target Start/End: Complemental strand, 40802395 - 40802092
Alignment:
Q  8 ggacatcatcaatgggnnnnnnnatcggttagggaccaccacctaatagctaccccaatattgagatgaaaatagtgggaggttgttaagaaggggaagc 107  Q
    ||||||||||||||||       ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  40802395 ggacatcatcaatgggtttttttatcggttagggaccaccacctaatagctaccccgatattgagatgaaaatagtgggaggttgttaagaaggggaagc 40802296  T
Q  108 tatacgtacaagacccctctctcttctcatttttaagggtattatctaaaaaacttgtattaaaaaagttggtcgtagcattcaatgtaacgagtttagg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40802295 tatacgtacaagacccctctctcttctcatttttaagggtattatctaaaaaacttgtattaaaaaagttggtcgtagcattcaatgtaacgagtttagg 40802196  T
Q  208 ttctttgaacatcataaagttttcgagaaatgagtcatatttgttaagaagctaggactgtccttgaacatgcacaattgcttatacattatacatacac 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40802195 ttctttgaacatcataaagttttcgagaaatgagtcatatttgttaagaagctaggactgtccttgaacatgcacaattgcttatacattatacatacac 40802096  T
Q  308 aaac 311  Q
    ||||    
T  40802095 aaac 40802092  T

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