View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17259_low_4 (Length: 627)
Name: NF17259_low_4
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17259_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 13 - 352
Target Start/End: Original strand, 42324980 - 42325322
Alignment:
| Q |
13 |
aaaataactggttaatttctagatatatggtactatatctcattatatattatatttaccagtgcaagtgttctcttagataaggatcactggggccagg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42324980 |
aaaataactggttaatttctagatatatggtactatatctcattatatattatatttaccagtgcaagtgttctcttagataaggatcactagggccagg |
42325079 |
T |
|
| Q |
113 |
aacatcagggtctgtcatcacctacaccaaccaaatatgtatatattagctcagtcatttaggttttgtcaataccattccaataaagcacaaatgatag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42325080 |
aacatcagggtctgtcatcacctacaccaaccaaatatgtatatattagctcagtcatttaggttttgtcaataccattccaataaagcacaaatgatag |
42325179 |
T |
|
| Q |
213 |
ttgttagtttgttagagagagggatgtttgatgttgtgagagattaaacaatatgaaactaattaaacaaatctctgactatatctaacaaggtgaaata |
312 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42325180 |
ttgttagtttgttagagagatggatgtttgatgttgtgagagattaaacaatatgaaactaattaaacaaatctctgactatatctaacaaggtgaaata |
42325279 |
T |
|
| Q |
313 |
tgtttagcgaag---attgaactctgaaccctgcatataaata |
352 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42325280 |
tgtttagcgaagaatattgaactctgaaccctgcatataaata |
42325322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 374 - 609
Target Start/End: Original strand, 42325363 - 42325598
Alignment:
| Q |
374 |
ggacagacacatagcgtgtttgtgtgagtatgtctgataatagaaaacaacaaaaaatatatgtataccagtgtatagaaggacctcatgtcaccaccat |
473 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42325363 |
ggacagacacatagcgtgtttgtgtgagtatgtctgataatagaaaacaacaaaaaatatatgtataccagtgtatagaaggacctcatgtcaccaccat |
42325462 |
T |
|
| Q |
474 |
caatctcaactttgggtttggtgttgatagtggaagggaaaaactcatggccattgaagacttgcttcttgttgtaactcacagtcattttcatgcttgt |
573 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42325463 |
caatctcaactttgggtttggtgttgatagtggaagggaaaaactcatggccattgaagacttgcttcttgttgtaactcacagtcattttcatgcttgt |
42325562 |
T |
|
| Q |
574 |
ggtaaaggaatcaagaacttctcctatcactcttcc |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
42325563 |
ggtaaaggaatcaagaacttctcctatcactcttcc |
42325598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 458 - 567
Target Start/End: Original strand, 36278866 - 36278975
Alignment:
| Q |
458 |
ctcatgtcaccaccatcaatctcaactttgggtttggtgttgatagtggaagggaaaaactcatggccattgaagacttgcttcttgttgtaactcacag |
557 |
Q |
| |
|
||||| |||||||||| ||||| |||||| ||||| ||| | | | |||||| ||||||||||| |||||| | |||||||| |||||||| | |||| |
|
|
| T |
36278866 |
ctcatatcaccaccatgaatctgaactttaggtttagtggtaactgaggaaggaaaaaactcatgaccattgtaaacttgcttagtgttgtaagtgacag |
36278965 |
T |
|
| Q |
558 |
tcattttcat |
567 |
Q |
| |
|
||||||||| |
|
|
| T |
36278966 |
acattttcat |
36278975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 26206116 - 26206165
Alignment:
| Q |
69 |
taccagtgcaagtgttctcttagataaggatcactggggccaggaacatc |
118 |
Q |
| |
|
|||||||| ||||||||| | | |||||||||||| |||||||||||||| |
|
|
| T |
26206116 |
taccagtgtaagtgttctttcatataaggatcacttgggccaggaacatc |
26206165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University