View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17259_low_42 (Length: 277)
Name: NF17259_low_42
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17259_low_42 |
 |  |
|
| [»] scaffold0091 (3 HSPs) |
 |  |  |
|
| [»] scaffold0003 (2 HSPs) |
 |  |  |
|
| [»] scaffold0218 (2 HSPs) |
 |  |  |
|
| [»] scaffold0063 (2 HSPs) |
 |  |  |
|
| [»] scaffold1043 (1 HSPs) |
 |  |  |
|
| [»] scaffold0061 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: scaffold0091 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: scaffold0091
Description:
Target: scaffold0091; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 29111 - 29057
Alignment:
| Q |
18 |
gtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatgag |
72 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29111 |
gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatgag |
29057 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0091; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 24756 - 24710
Alignment:
| Q |
166 |
gacgtataattatgatgatcacttgaatgatggtgtctaatatacat |
212 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
24756 |
gacgtataattatgatgatgacttgaatgatggtgtctaatatacat |
24710 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0091; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 28953 - 28907
Alignment:
| Q |
166 |
gacgtataattatgatgatcacttgaatgatggtgtctaatatacat |
212 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28953 |
gacgtataattatgatgatgacttgaatgatggtgtctaatatacat |
28907 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 130849 - 130795
Alignment:
| Q |
18 |
gtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatgag |
72 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
130849 |
gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatgag |
130795 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 130669 - 130623
Alignment:
| Q |
166 |
gacgtataattatgatgatcacttgaatgatggtgtctaatatacat |
212 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
130669 |
gacgtataattatgatgatgacttgaatgatggtgtctaatatacat |
130623 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 14989436 - 14989490
Alignment:
| Q |
18 |
gtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatgag |
72 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14989436 |
gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatgag |
14989490 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 14980324 - 14980376
Alignment:
| Q |
18 |
gtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatg |
70 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14980324 |
gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatg |
14980376 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 14980486 - 14980532
Alignment:
| Q |
166 |
gacgtataattatgatgatcacttgaatgatggtgtctaatatacat |
212 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14980486 |
gacgtataattatgatgatgacttgaatgatggtgtctaatatacat |
14980532 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 10906902 - 10906939
Alignment:
| Q |
35 |
atgagagatgataatgtttatatgttagtgatgatgag |
72 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
10906902 |
atgagaaatgataatgtttatattttagtgatgatgag |
10906939 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 13882297 - 13882351
Alignment:
| Q |
18 |
gtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatgag |
72 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13882297 |
gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatgag |
13882351 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 51658723 - 51658777
Alignment:
| Q |
18 |
gtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatgag |
72 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
51658723 |
gtaattaaataaatacgatgagaaatgataatatttatatgttagtgatgatgag |
51658777 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 13882490 - 13882536
Alignment:
| Q |
166 |
gacgtataattatgatgatcacttgaatgatggtgtctaatatacat |
212 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13882490 |
gacgtataattatgatgatgacttgaatgatggtgtctaatatacat |
13882536 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 51658879 - 51658925
Alignment:
| Q |
166 |
gacgtataattatgatgatcacttgaatgatggtgtctaatatacat |
212 |
Q |
| |
|
||||||||||||||||||| ||||||| |||| | |||||||||||| |
|
|
| T |
51658879 |
gacgtataattatgatgatgacttgaacgatgatatctaatatacat |
51658925 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0218 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0218
Description:
Target: scaffold0218; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 14431 - 14378
Alignment:
| Q |
18 |
gtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatga |
71 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
14431 |
gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatga |
14378 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0218; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 14273 - 14227
Alignment:
| Q |
166 |
gacgtataattatgatgatcacttgaatgatggtgtctaatatacat |
212 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
14273 |
gacgtataattatgatgatgacttatatgatggtgtctaatatacat |
14227 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 4712861 - 4712913
Alignment:
| Q |
18 |
gtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatg |
70 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4712861 |
gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatg |
4712913 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 16642351 - 16642300
Alignment:
| Q |
18 |
gtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgat |
69 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16642351 |
gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgat |
16642300 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 14055098 - 14055152
Alignment:
| Q |
18 |
gtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatgag |
72 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
14055098 |
gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgataatgag |
14055152 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 14062839 - 14062893
Alignment:
| Q |
18 |
gtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatgag |
72 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
14062839 |
gtaattaaataaatacgatgagaaatgataatgtttatatgttagttatgatgag |
14062893 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 4713023 - 4713069
Alignment:
| Q |
166 |
gacgtataattatgatgatcacttgaatgatggtgtctaatatacat |
212 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4713023 |
gacgtataattatgatgataacttgaatgatggtgtctaatatacat |
4713069 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 16642169 - 16642123
Alignment:
| Q |
166 |
gacgtataattatgatgatcacttgaatgatggtgtctaatatacat |
212 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16642169 |
gacgtataattatgatgatgacttgaatgatggtgtctaatatacat |
16642123 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 14055248 - 14055294
Alignment:
| Q |
166 |
gacgtataattatgatgatcacttgaatgatggtgtctaatatacat |
212 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
14055248 |
gacgtataattatgatgatgacttgaatgatgatgtctaatatacat |
14055294 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 13926915 - 13926960
Alignment:
| Q |
23 |
taaataaatacgatgagagatgataatgtttatatgttagtgatga |
68 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
13926915 |
taaataaatacgatgagaaatgataatgtttatattttagtgatga |
13926960 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 14063009 - 14063049
Alignment:
| Q |
166 |
gacgtataattatgatgatcacttgaatgatggtgtctaat |
206 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14063009 |
gacgtataattatgatgatgacttgaatgatggtgtctaat |
14063049 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 23657805 - 23657751
Alignment:
| Q |
18 |
gtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatgag |
72 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
23657805 |
gtaattaaataaatacgatgagaaattataatgtttatatgttagtgatgatgag |
23657751 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 23658580 - 23658526
Alignment:
| Q |
18 |
gtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatgag |
72 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
23658580 |
gtaattaaataaatacgatgagaaattataatgtttatatgttagtgatgatgag |
23658526 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 23657684 - 23657638
Alignment:
| Q |
166 |
gacgtataattatgatgatcacttgaatgatggtgtctaatatacat |
212 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23657684 |
gacgtataattatgatgatgacttgaatgatggtgtctaatatacat |
23657638 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 212
Target Start/End: Complemental strand, 23658455 - 23658413
Alignment:
| Q |
170 |
tataattatgatgatcacttgaatgatggtgtctaatatacat |
212 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23658455 |
tataattatgatgatgacttgaatgatggtgtctaatatacat |
23658413 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 17862270 - 17862313
Alignment:
| Q |
169 |
gtataattatgatgatcacttgaatgatggtgtctaatatacat |
212 |
Q |
| |
|
|||||||||||||||| | |||||||||| |||||||||||||| |
|
|
| T |
17862270 |
gtataattatgatgatgatttgaatgatgatgtctaatatacat |
17862313 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 16060566 - 16060512
Alignment:
| Q |
18 |
gtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatgag |
72 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
16060566 |
gtaattaaataaatatgatgagaaatgataatgtttatatgttagtgatgatgag |
16060512 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 48376841 - 48376787
Alignment:
| Q |
18 |
gtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatgag |
72 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
48376841 |
gtaattaaataaatacgatgagaaatgataatgtttatatgttattgatgatgag |
48376787 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 9080242 - 9080196
Alignment:
| Q |
166 |
gacgtataattatgatgatcacttgaatgatggtgtctaatatacat |
212 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9080242 |
gacgtataattatgatgatgacttgaatgatggtgtctaatatacat |
9080196 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 16060410 - 16060364
Alignment:
| Q |
166 |
gacgtataattatgatgatcacttgaatgatggtgtctaatatacat |
212 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16060410 |
gacgtataattatgatgatgacttgaatgatggtgtctaatatacat |
16060364 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 48376673 - 48376627
Alignment:
| Q |
166 |
gacgtataattatgatgatcacttgaatgatggtgtctaatatacat |
212 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
48376673 |
gacgtataattatgatgatgacttaaatgatggtgtctaatatacat |
48376627 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 16069031 - 16069077
Alignment:
| Q |
166 |
gacgtataattatgatgatcacttgaatgatggtgtctaatatacat |
212 |
Q |
| |
|
||||||||||||||||||| | |||||||||| |||||||||||||| |
|
|
| T |
16069031 |
gacgtataattatgatgatgatttgaatgatgatgtctaatatacat |
16069077 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 9080375 - 9080338
Alignment:
| Q |
35 |
atgagagatgataatgtttatatgttagtgatgatgag |
72 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9080375 |
atgagaaatgataatgtttatatgttagtgatgatgag |
9080338 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 28482 - 28528
Alignment:
| Q |
166 |
gacgtataattatgatgatcacttgaatgatggtgtctaatatacat |
212 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
28482 |
gacgtataattatgatgatgaattgaatgatggtgtctaatatacat |
28528 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 72
Target Start/End: Original strand, 28342 - 28380
Alignment:
| Q |
34 |
gatgagagatgataatgtttatatgttagtgatgatgag |
72 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
28342 |
gatgagaaatgatgatgtttatatgttagtgatgatgag |
28380 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1043 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1043
Description:
Target: scaffold1043; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 1449 - 1494
Alignment:
| Q |
167 |
acgtataattatgatgatcacttgaatgatggtgtctaatatacat |
212 |
Q |
| |
|
|||||||||||||||||| | |||||||||| |||||||||||||| |
|
|
| T |
1449 |
acgtataattatgatgatgatttgaatgatgatgtctaatatacat |
1494 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 18128 - 18171
Alignment:
| Q |
169 |
gtataattatgatgatcacttgaatgatggtgtctaatatacat |
212 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
18128 |
gtatgattatgatgatgacttgaatgatggtatctaatatacat |
18171 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 19728471 - 19728514
Alignment:
| Q |
169 |
gtataattatgatgatcacttgaatgatggtgtctaatatacat |
212 |
Q |
| |
|
|||||||||||||||| | |||||||||| |||||||||||||| |
|
|
| T |
19728471 |
gtataattatgatgatgatttgaatgatgatgtctaatatacat |
19728514 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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