View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17259_low_42 (Length: 277)

Name: NF17259_low_42
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17259_low_42
NF17259_low_42
[»] scaffold0091 (3 HSPs)
scaffold0091 (18-72)||(29057-29111)
scaffold0091 (166-212)||(24710-24756)
scaffold0091 (166-212)||(28907-28953)
[»] scaffold0003 (2 HSPs)
scaffold0003 (18-72)||(130795-130849)
scaffold0003 (166-212)||(130623-130669)
[»] chr6 (4 HSPs)
chr6 (18-72)||(14989436-14989490)
chr6 (18-70)||(14980324-14980376)
chr6 (166-212)||(14980486-14980532)
chr6 (35-72)||(10906902-10906939)
[»] chr1 (4 HSPs)
chr1 (18-72)||(13882297-13882351)
chr1 (18-72)||(51658723-51658777)
chr1 (166-212)||(13882490-13882536)
chr1 (166-212)||(51658879-51658925)
[»] scaffold0218 (2 HSPs)
scaffold0218 (18-71)||(14378-14431)
scaffold0218 (166-212)||(14227-14273)
[»] chr3 (9 HSPs)
chr3 (18-70)||(4712861-4712913)
chr3 (18-69)||(16642300-16642351)
chr3 (18-72)||(14055098-14055152)
chr3 (18-72)||(14062839-14062893)
chr3 (166-212)||(4713023-4713069)
chr3 (166-212)||(16642123-16642169)
chr3 (166-212)||(14055248-14055294)
chr3 (23-68)||(13926915-13926960)
chr3 (166-206)||(14063009-14063049)
[»] chr8 (5 HSPs)
chr8 (18-72)||(23657751-23657805)
chr8 (18-72)||(23658526-23658580)
chr8 (166-212)||(23657638-23657684)
chr8 (170-212)||(23658413-23658455)
chr8 (169-212)||(17862270-17862313)
[»] chr7 (7 HSPs)
chr7 (18-72)||(16060512-16060566)
chr7 (18-72)||(48376787-48376841)
chr7 (166-212)||(9080196-9080242)
chr7 (166-212)||(16060364-16060410)
chr7 (166-212)||(48376627-48376673)
chr7 (166-212)||(16069031-16069077)
chr7 (35-72)||(9080338-9080375)
[»] scaffold0063 (2 HSPs)
scaffold0063 (166-212)||(28482-28528)
scaffold0063 (34-72)||(28342-28380)
[»] scaffold1043 (1 HSPs)
scaffold1043 (167-212)||(1449-1494)
[»] scaffold0061 (1 HSPs)
scaffold0061 (169-212)||(18128-18171)
[»] chr4 (1 HSPs)
chr4 (169-212)||(19728471-19728514)


Alignment Details
Target: scaffold0091 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 29111 - 29057
Alignment:
18 gtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatgag 72  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
29111 gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatgag 29057  T

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Target: scaffold0091; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 24756 - 24710
Alignment:
166 gacgtataattatgatgatcacttgaatgatggtgtctaatatacat 212  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
24756 gacgtataattatgatgatgacttgaatgatggtgtctaatatacat 24710  T

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Target: scaffold0091; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 28953 - 28907
Alignment:
166 gacgtataattatgatgatcacttgaatgatggtgtctaatatacat 212  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
28953 gacgtataattatgatgatgacttgaatgatggtgtctaatatacat 28907  T

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Target: scaffold0003 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 130849 - 130795
Alignment:
18 gtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatgag 72  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
130849 gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatgag 130795  T

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Target: scaffold0003; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 130669 - 130623
Alignment:
166 gacgtataattatgatgatcacttgaatgatggtgtctaatatacat 212  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
130669 gacgtataattatgatgatgacttgaatgatggtgtctaatatacat 130623  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 14989436 - 14989490
Alignment:
18 gtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatgag 72  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
14989436 gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatgag 14989490  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 14980324 - 14980376
Alignment:
18 gtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatg 70  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
14980324 gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatg 14980376  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 14980486 - 14980532
Alignment:
166 gacgtataattatgatgatcacttgaatgatggtgtctaatatacat 212  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
14980486 gacgtataattatgatgatgacttgaatgatggtgtctaatatacat 14980532  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 10906902 - 10906939
Alignment:
35 atgagagatgataatgtttatatgttagtgatgatgag 72  Q
    |||||| |||||||||||||||| ||||||||||||||    
10906902 atgagaaatgataatgtttatattttagtgatgatgag 10906939  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 13882297 - 13882351
Alignment:
18 gtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatgag 72  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
13882297 gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatgag 13882351  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 51658723 - 51658777
Alignment:
18 gtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatgag 72  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
51658723 gtaattaaataaatacgatgagaaatgataatatttatatgttagtgatgatgag 51658777  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 13882490 - 13882536
Alignment:
166 gacgtataattatgatgatcacttgaatgatggtgtctaatatacat 212  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
13882490 gacgtataattatgatgatgacttgaatgatggtgtctaatatacat 13882536  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 51658879 - 51658925
Alignment:
166 gacgtataattatgatgatcacttgaatgatggtgtctaatatacat 212  Q
    ||||||||||||||||||| ||||||| |||| | ||||||||||||    
51658879 gacgtataattatgatgatgacttgaacgatgatatctaatatacat 51658925  T

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Target: scaffold0218 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 14431 - 14378
Alignment:
18 gtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatga 71  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
14431 gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatga 14378  T

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Target: scaffold0218; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 14273 - 14227
Alignment:
166 gacgtataattatgatgatcacttgaatgatggtgtctaatatacat 212  Q
    ||||||||||||||||||| ||||  |||||||||||||||||||||    
14273 gacgtataattatgatgatgacttatatgatggtgtctaatatacat 14227  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 4712861 - 4712913
Alignment:
18 gtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatg 70  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
4712861 gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatg 4712913  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 16642351 - 16642300
Alignment:
18 gtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgat 69  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
16642351 gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgat 16642300  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 14055098 - 14055152
Alignment:
18 gtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatgag 72  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
14055098 gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgataatgag 14055152  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 14062839 - 14062893
Alignment:
18 gtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatgag 72  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
14062839 gtaattaaataaatacgatgagaaatgataatgtttatatgttagttatgatgag 14062893  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 4713023 - 4713069
Alignment:
166 gacgtataattatgatgatcacttgaatgatggtgtctaatatacat 212  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
4713023 gacgtataattatgatgataacttgaatgatggtgtctaatatacat 4713069  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 16642169 - 16642123
Alignment:
166 gacgtataattatgatgatcacttgaatgatggtgtctaatatacat 212  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
16642169 gacgtataattatgatgatgacttgaatgatggtgtctaatatacat 16642123  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 14055248 - 14055294
Alignment:
166 gacgtataattatgatgatcacttgaatgatggtgtctaatatacat 212  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||    
14055248 gacgtataattatgatgatgacttgaatgatgatgtctaatatacat 14055294  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 13926915 - 13926960
Alignment:
23 taaataaatacgatgagagatgataatgtttatatgttagtgatga 68  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||    
13926915 taaataaatacgatgagaaatgataatgtttatattttagtgatga 13926960  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 14063009 - 14063049
Alignment:
166 gacgtataattatgatgatcacttgaatgatggtgtctaat 206  Q
    ||||||||||||||||||| |||||||||||||||||||||    
14063009 gacgtataattatgatgatgacttgaatgatggtgtctaat 14063049  T

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Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 23657805 - 23657751
Alignment:
18 gtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatgag 72  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
23657805 gtaattaaataaatacgatgagaaattataatgtttatatgttagtgatgatgag 23657751  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 23658580 - 23658526
Alignment:
18 gtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatgag 72  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
23658580 gtaattaaataaatacgatgagaaattataatgtttatatgttagtgatgatgag 23658526  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 23657684 - 23657638
Alignment:
166 gacgtataattatgatgatcacttgaatgatggtgtctaatatacat 212  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
23657684 gacgtataattatgatgatgacttgaatgatggtgtctaatatacat 23657638  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 212
Target Start/End: Complemental strand, 23658455 - 23658413
Alignment:
170 tataattatgatgatcacttgaatgatggtgtctaatatacat 212  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
23658455 tataattatgatgatgacttgaatgatggtgtctaatatacat 23658413  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 17862270 - 17862313
Alignment:
169 gtataattatgatgatcacttgaatgatggtgtctaatatacat 212  Q
    |||||||||||||||| | |||||||||| ||||||||||||||    
17862270 gtataattatgatgatgatttgaatgatgatgtctaatatacat 17862313  T

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Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 16060566 - 16060512
Alignment:
18 gtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatgag 72  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
16060566 gtaattaaataaatatgatgagaaatgataatgtttatatgttagtgatgatgag 16060512  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 48376841 - 48376787
Alignment:
18 gtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatgag 72  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
48376841 gtaattaaataaatacgatgagaaatgataatgtttatatgttattgatgatgag 48376787  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 9080242 - 9080196
Alignment:
166 gacgtataattatgatgatcacttgaatgatggtgtctaatatacat 212  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
9080242 gacgtataattatgatgatgacttgaatgatggtgtctaatatacat 9080196  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 16060410 - 16060364
Alignment:
166 gacgtataattatgatgatcacttgaatgatggtgtctaatatacat 212  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
16060410 gacgtataattatgatgatgacttgaatgatggtgtctaatatacat 16060364  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 48376673 - 48376627
Alignment:
166 gacgtataattatgatgatcacttgaatgatggtgtctaatatacat 212  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||    
48376673 gacgtataattatgatgatgacttaaatgatggtgtctaatatacat 48376627  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 16069031 - 16069077
Alignment:
166 gacgtataattatgatgatcacttgaatgatggtgtctaatatacat 212  Q
    ||||||||||||||||||| | |||||||||| ||||||||||||||    
16069031 gacgtataattatgatgatgatttgaatgatgatgtctaatatacat 16069077  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 9080375 - 9080338
Alignment:
35 atgagagatgataatgtttatatgttagtgatgatgag 72  Q
    |||||| |||||||||||||||||||||||||||||||    
9080375 atgagaaatgataatgtttatatgttagtgatgatgag 9080338  T

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Target: scaffold0063 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 28482 - 28528
Alignment:
166 gacgtataattatgatgatcacttgaatgatggtgtctaatatacat 212  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||    
28482 gacgtataattatgatgatgaattgaatgatggtgtctaatatacat 28528  T

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Target: scaffold0063; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 72
Target Start/End: Original strand, 28342 - 28380
Alignment:
34 gatgagagatgataatgtttatatgttagtgatgatgag 72  Q
    ||||||| ||||| |||||||||||||||||||||||||    
28342 gatgagaaatgatgatgtttatatgttagtgatgatgag 28380  T

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Target: scaffold1043 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 1449 - 1494
Alignment:
167 acgtataattatgatgatcacttgaatgatggtgtctaatatacat 212  Q
    |||||||||||||||||| | |||||||||| ||||||||||||||    
1449 acgtataattatgatgatgatttgaatgatgatgtctaatatacat 1494  T

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Target: scaffold0061 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 18128 - 18171
Alignment:
169 gtataattatgatgatcacttgaatgatggtgtctaatatacat 212  Q
    |||| ||||||||||| |||||||||||||| ||||||||||||    
18128 gtatgattatgatgatgacttgaatgatggtatctaatatacat 18171  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 19728471 - 19728514
Alignment:
169 gtataattatgatgatcacttgaatgatggtgtctaatatacat 212  Q
    |||||||||||||||| | |||||||||| ||||||||||||||    
19728471 gtataattatgatgatgatttgaatgatgatgtctaatatacat 19728514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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