View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17259_low_43 (Length: 274)
Name: NF17259_low_43
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17259_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 34776902 - 34777155
Alignment:
| Q |
18 |
gatttggtgatgcttacaatgtttcttggtaaagaaagaacaaagcaagaatgggaaaaactcatatatgatgcaggttttagcagctacaaaattaccc |
117 |
Q |
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| T |
34776902 |
gatttggtgatgcttacaatgtttcttggtaaagaaagaacaaagcaagaatgggaaaaactcatatatgatgcaggttttagcagctacaaaattaccc |
34777001 |
T |
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| Q |
118 |
ccatttctggcttcaagtcactcatcgaagtttatccttgatcctgaagttgctgcaatgttataaattccgaattaataattttcgattcagagagtca |
217 |
Q |
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| T |
34777002 |
ccatttctggcttcaagtcactcatcgaagtttatccttgatcctgaagttgctgcaaagttataaattccgaattaataagtttcgattcagagagtca |
34777101 |
T |
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| Q |
218 |
agttaatagtatttatcacttcctgttacaaattaatttcccaaatttgttctt |
271 |
Q |
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| T |
34777102 |
agttaatagtatttatcacttcctgttacaaattaatttcccaaatttgttctt |
34777155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 34785068 - 34785206
Alignment:
| Q |
18 |
gatttggtgatgcttacaatgtttcttggtaaagaaagaacaaagcaagaatgggaaaaactcatatatgatgcaggttttagcagctacaaaattaccc |
117 |
Q |
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| T |
34785068 |
gatttggtgatgcttacaatgttccttggtaaagaaagaacaaagcaagaatgggaaaaactcatatatgatgcaggttttagcagctacaaaattaccc |
34785167 |
T |
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| Q |
118 |
ccatttctggcttcaagtcactcatcgaagtttatcctt |
156 |
Q |
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| T |
34785168 |
ccatttctggcttcaagtctctcgttgaagtttatcctt |
34785206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 156
Target Start/End: Complemental strand, 11467378 - 11467270
Alignment:
| Q |
48 |
aaagaaagaacaaagcaagaatgggaaaaactcatatatgatgcaggttttagcagctacaaaattacccccatttctggcttcaagtcactcatcgaag |
147 |
Q |
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| T |
11467378 |
aaagaaagagaaaagaaagaatggaagaaactcatatatgatgcaggtttcagtagctacaagattactccaatatgtggcttcaagtctcttatagaag |
11467279 |
T |
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| Q |
148 |
tttatcctt |
156 |
Q |
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| T |
11467278 |
tttatcctt |
11467270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 11487821 - 11487927
Alignment:
| Q |
48 |
aaagaaagaacaaagcaagaatgggaaaaactcatatatgatgcaggttttagcagctacaaaattacccccatttctggcttcaagtcactcatcgaag |
147 |
Q |
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| T |
11487821 |
aaagaaagagaaaagaaagaatggaagaaactcatctatgacgctggcttcagcagctacaagattactccaatatgtggcttcaagtcactcatagaag |
11487920 |
T |
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| Q |
148 |
tttatcc |
154 |
Q |
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| T |
11487921 |
tttatcc |
11487927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 156
Target Start/End: Original strand, 11524495 - 11524603
Alignment:
| Q |
48 |
aaagaaagaacaaagcaagaatgggaaaaactcatatatgatgcaggttttagcagctacaaaattacccccatttctggcttcaagtcactcatcgaag |
147 |
Q |
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| T |
11524495 |
aaagaaagagaaaagaaagaatggaagaaactcatctatgacgctggcttcagcagctacaagattactccaatatgtggcttcaagtctcttatagaag |
11524594 |
T |
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| Q |
148 |
tttatcctt |
156 |
Q |
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| T |
11524595 |
tttatcctt |
11524603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 154
Target Start/End: Original strand, 11508296 - 11508386
Alignment:
| Q |
64 |
aagaatgggaaaaactcatatatgatgcaggttttagcagctacaaaattacccccatttctggcttcaagtcactcatcgaagtttatcc |
154 |
Q |
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| T |
11508296 |
aagaatgggagaaactcatattcgacgcaggtttcagcagctataagattacacctatatgcggtttcaagtctctcatcgaagtatatcc |
11508386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 156
Target Start/End: Complemental strand, 11441594 - 11441502
Alignment:
| Q |
64 |
aagaatgggaaaaactcatatatgatgcaggttttagcagctacaaaattacccccatttctggcttcaagtcactcatcgaagtttatcctt |
156 |
Q |
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| T |
11441594 |
aagaatgggagaaactcatattcgacgcaggcttcagcagctataagattacacctatatgcggcttcaaatctatcatcgaagtttatcctt |
11441502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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