View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17259_low_45 (Length: 268)
Name: NF17259_low_45
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17259_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 54160192 - 54160426
Alignment:
| Q |
1 |
tagcaaaaaatgtgagaaagcaatctacctttctggggcagtaaaaaacaattcttcaagttcttcaggttgcaaaatcccattctggaggaatgaaaac |
100 |
Q |
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| T |
54160192 |
tagcaaaaaatgtgagaaagcaatctacctttctggggcagtaaaaaacaattcttcaagttcttcaggttgcaaaatcccattctggagtaatg----- |
54160286 |
T |
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| Q |
101 |
agacaatgaaaactcaacttgtatatcacaataaagccggaaaaagtctgaaaatcgctaacgggatgcataaaagagtgaaaatattcaagattgtttg |
200 |
Q |
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| T |
54160287 |
--------aaaactcaacttgtatatcacaataaagccggaaaaagtctgaaaatcgctaacgggatgcataaaagagtgaaaatattcaagattgtttg |
54160378 |
T |
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| Q |
201 |
agcgaaagacctacacaatcgacatcaaattcaacaaatactttcttc |
248 |
Q |
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| T |
54160379 |
agcgaaagacctacacaatcgacatcaaattcaacaaatactttcttc |
54160426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 53867151 - 53867053
Alignment:
| Q |
1 |
tagcaaaaaatgtgagaaagcaatctacctttctggggcagtaaaaaacaattcttcaagttcttcaggttgcaaaatcccattctggaggaatgaaaa |
99 |
Q |
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| T |
53867151 |
tagcaaaaaatgtgagaaagcaatctacctttccggggcagtagaaaacaattctttaagttcttcaggttgcaaatacccatcctgaaggagtgaaaa |
53867053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 36874901 - 36874857
Alignment:
| Q |
19 |
agcaatctacctttctggggcagtaaaaaacaattcttcaagttc |
63 |
Q |
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| T |
36874901 |
agcaatctacctttccggggcagtggaaaacaattcttcaagttc |
36874857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 15049735 - 15049779
Alignment:
| Q |
19 |
agcaatctacctttctggggcagtaaaaaacaattcttcaagttc |
63 |
Q |
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| T |
15049735 |
agcaatctacctttccggagcagtagaaaacagttcttcaagttc |
15049779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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