View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17259_low_46 (Length: 262)
Name: NF17259_low_46
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17259_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 49124433 - 49124681
Alignment:
| Q |
1 |
gatttgagatgttgaagagagattctcttaaggaagttcaccttgctgtgtcaagagcaatcttcattctcatatgccaagtcaatcctaagccatgaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
49124433 |
gatttgagatgttgaagagagattctcttaaggaagttcaccttgctgtgtcaagagcaatcttcattctcatatgccaagtcaatcctgagccatgaga |
49124532 |
T |
|
| Q |
101 |
tggtccttcaacataaaattttgcnnnnnnnnnnnnnnnnntgtaactgagtttagaatgttatgtaactgagagttgtaaaagtcttctacc----ata |
196 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
49124533 |
tggtccttcaacataaaattttgc--acaaaaaaagaaaaatgtaactgagtttagaatgttatgtaactgagagttgtaaaagtcttctaccatgtata |
49124630 |
T |
|
| Q |
197 |
tatatataaattagcatcaaatacaaaacattaccatgtaatagagcttcc |
247 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49124631 |
tatataaaaattagcatcaaatacaaaacattaccatgtaatagagcttcc |
49124681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 11683305 - 11683489
Alignment:
| Q |
1 |
gatttgagatgttgaagagagattctcttaaggaagttcaccttgctgtgtcaagagcaatcttcattctcatatgccaagtcaatcctaagccatgaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
11683305 |
gatttgagatgttgaagagagattctcttaaggaagttcaccttgctgtgtcaagagcaatcttcattctcatatgccaagtcaatcctgagccatgaga |
11683404 |
T |
|
| Q |
101 |
tggtccttcaacataaaattttgcnnnnnnnnnnnnnnnnntgtaactgagtttagaatgttatgtaactgagagttgtaaaagtcttctac |
192 |
Q |
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| T |
11683405 |
ttttccttcaacgtaaaattttgc-------acaagaaaaatgtaactgagtttagaatgttatttaactgagagttgtaaatgtcttctac |
11683489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 18988504 - 18988604
Alignment:
| Q |
3 |
tttgagatgttgaagagagattctcttaaggaagttcaccttgctgtgtcaagagcaatcttcattctcatatgccaagtcaatcctaagccatgagatg |
102 |
Q |
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|||||||||||||||||| ||||||||||| ||||||||| ||||||||||| |||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
18988504 |
tttgagatgttgaagagaaattctcttaag----ttcaccttgttgtgtcaagagaaatcttaattctcatatgccaagtcaatcctgagccatgagatg |
18988599 |
T |
|
| Q |
103 |
gtcct |
107 |
Q |
| |
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||||| |
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| T |
18988600 |
gtcct |
18988604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 30341261 - 30341157
Alignment:
| Q |
3 |
tttgagatgttgaagagagattctcttaaggaagttcaccttgctgtgtcaagagcaatcttcattctcatatgccaagtcaatcctaagccatgagatg |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
30341261 |
tttgagatgttgaagagagattctcttaaggaagttcaccttgttgtgtcaagagaaatcttaattctcatatgccaagtcaatcctgagccatgagatg |
30341162 |
T |
|
| Q |
103 |
gtcct |
107 |
Q |
| |
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||||| |
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| T |
30341161 |
gtcct |
30341157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 23917020 - 23916920
Alignment:
| Q |
3 |
tttgagatgttgaagagagattctcttaaggaagttcaccttgctgtgtcaagagcaatcttcattctcatatgccaagtcaatcctaagccatgagatg |
102 |
Q |
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|||||||||||||||||| ||||||||||| ||||||||| ||||||||||| |||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
23917020 |
tttgagatgttgaagagaaattctcttaag----ttcaccttgttgtgtcaagagaaatcttaattctcatatgccaagtcaatcctgagccatgagatg |
23916925 |
T |
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| Q |
103 |
gtcct |
107 |
Q |
| |
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||||| |
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| T |
23916924 |
gtcct |
23916920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 4271351 - 4271269
Alignment:
| Q |
28 |
ttaaggaagttcaccttgctgtgtcaagagcaatcttcattctcatatgccaagtcaatcctaagccatgagatggtccttca |
110 |
Q |
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|||| |||| |||||| ||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||| |
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| T |
4271351 |
ttaaagaaggtcacctagctgtgtcaagagcaatcttcatcctcatatgccaagtcaatgctgagccatgagatggtccttca |
4271269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 2807695 - 2807613
Alignment:
| Q |
28 |
ttaaggaagttcaccttgctgtgtcaagagcaatcttcattctcatatgccaagtcaatcctaagccatgagatggtccttca |
110 |
Q |
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|||| |||| |||||| ||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||| |
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| T |
2807695 |
ttaaagaaggtcacctagctgtgtcaagagcaatcttcatcctcatatgccaagtcaatgctgagccatgagatggtccttca |
2807613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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