View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17259_low_48 (Length: 256)
Name: NF17259_low_48
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17259_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 60 - 179
Target Start/End: Original strand, 25745460 - 25745579
Alignment:
| Q |
60 |
acctgagctttggtatctatgctgcaaatgttggttcccttttctacagtccacaacttaatacaactatcgtctgatccgcctccagaagtaagcacag |
159 |
Q |
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| T |
25745460 |
acctgagctttggtatctatgctgcaaatgttggttcctctttgtacattccacaacttaatacatctatcatctgttccgcctccagaagcaagcacat |
25745559 |
T |
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| Q |
160 |
ctgaaccataagggcaccaa |
179 |
Q |
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||||| |||||||||||||| |
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| T |
25745560 |
ctgaatcataagggcaccaa |
25745579 |
T |
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Target: chr1 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 18929000 - 18929079
Alignment:
| Q |
139 |
cgcctccagaagtaagcacagctgaaccataagggcaccaagcatgatctttcacgagttcatcttatttgcgtcccaca |
218 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18929000 |
cgcccccagaagcaagcacagctgaaccataagggcaccaagcatgatctttcacgagttcatcttatttgcgtcccaca |
18929079 |
T |
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