View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17259_low_50 (Length: 249)
Name: NF17259_low_50
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17259_low_50 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 32 - 209
Target Start/End: Complemental strand, 232347 - 232170
Alignment:
| Q |
32 |
gcaacccaagtataaagaagttggttactttgatggcaaccaaaaccattttctctacccttattatatcaacacgtgcaatctaagatagtgtgggttt |
131 |
Q |
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||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
232347 |
gcaacccaagtataaagaagttggtcactttggtggcaaccaaaaccattttctctacccttattatatcaacacgtgcaatccaagatagtgtgggttt |
232248 |
T |
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| Q |
132 |
taacaagtggtgttgaaaagtggcggattatgaaatttgtcaatgatatcaactaaaacatgcatgaaactcctaaaa |
209 |
Q |
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||||| ||||||||||||||| || |||||||| |||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
232247 |
taacaggtggtgttgaaaagtagcagattatgagatttgtgaatgatatcaactaaaacatgcatgaaactccaaaaa |
232170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 32 - 209
Target Start/End: Complemental strand, 9958132 - 9957955
Alignment:
| Q |
32 |
gcaacccaagtataaagaagttggttactttgatggcaaccaaaaccattttctctacccttattatatcaacacgtgcaatctaagatagtgtgggttt |
131 |
Q |
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| T |
9958132 |
gcaacccaagtataaagaagttggtcactttggtggcaaccaaaaccattttctctacccttattatatcaacacgtgcaatccaagatagtgtgggttt |
9958033 |
T |
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| Q |
132 |
taacaagtggtgttgaaaagtggcggattatgaaatttgtcaatgatatcaactaaaacatgcatgaaactcctaaaa |
209 |
Q |
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| T |
9958032 |
taacaggtagtgttgaaaagtggcagattatgagatttgtgaatgatatcaactaaaacatgcatgaaactccaaaaa |
9957955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 124
Target Start/End: Complemental strand, 47503331 - 47503260
Alignment:
| Q |
53 |
tggttactttgatggcaaccaaaaccattttctctacccttattatatcaacacgtgcaatctaagatagtg |
124 |
Q |
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| T |
47503331 |
tggtcactttggtggcaactaaaaccattttctctatccttattatatcaacatgtgcaatccaagatagtg |
47503260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 32 - 209
Target Start/End: Complemental strand, 45801884 - 45801707
Alignment:
| Q |
32 |
gcaacccaagtataaagaagttggttactttgatggcaaccaaaaccattttctctacccttattatatcaacacgtgcaatctaagatagtgtgggttt |
131 |
Q |
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|||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
45801884 |
gcaatccaagtataaagaagttggtcactttggtggcaaccaaaaccattttctctacccttattatatcaacacgtgcaatccaagatagtgtgggttt |
45801785 |
T |
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| Q |
132 |
taacaagtggtgttgaaaagtggcggattatgaaatttgtcaatgatatcaactaaaacatgcatgaaactcctaaaa |
209 |
Q |
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||||| |||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
45801784 |
taacaggtggtgttgaaaagtggcagattatgagatttgtgaatgatatcaactaaaacatgcatgaaactccaaaaa |
45801707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 32 - 180
Target Start/End: Original strand, 14613733 - 14613881
Alignment:
| Q |
32 |
gcaacccaagtataaagaagttggttactttgatggcaaccaaaaccattttctctacccttattatatcaacacgtgcaatctaagatagtgtgggttt |
131 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
14613733 |
gcaacccaagtataaagaagttggtcactttggtggcaaccaaaaccattttctctaccctttttatatcaacacgtgcaatccaagatagtgtgggttt |
14613832 |
T |
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| Q |
132 |
taacaagtggtgttgaaaagtggcggattatgaaatttgtcaatgatat |
180 |
Q |
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| T |
14613833 |
taacaggtggtgttgaaaagtggcagattatgagatttgtgaatgatat |
14613881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 32 - 209
Target Start/End: Complemental strand, 36701851 - 36701685
Alignment:
| Q |
32 |
gcaacccaagtataaagaagttggttactttgatggcaaccaaaaccattttctctacccttattatatcaacacgtgcaatctaagatagtgtgggttt |
131 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36701851 |
gcaacccaagtataaagaagttggtcactttggtggcaaccaaaaccattttctctacccttattatatcaacacgtgcaatacaagatagtgtgggttt |
36701752 |
T |
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| Q |
132 |
taacaagtggtgttgaaaagtggcggattatgaaatttgtcaatgatatcaactaaaacatgcatgaaactcctaaaa |
209 |
Q |
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||||| |||||||| |||||||| |||||| ||||||||||||||||||| |||||||||||| |||| |
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| T |
36701751 |
taacaggtggtgtt-----------gattatgagatttgtgaatgatatcaactaaaacacgcatgaaactccaaaaa |
36701685 |
T |
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