View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17259_low_53 (Length: 237)
Name: NF17259_low_53
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17259_low_53 |
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Alignment Details
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 240247 - 240289
Alignment:
| Q |
15 |
caaagggaatcaaatctaaaaccttgagaggagcacatttgaa |
57 |
Q |
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| T |
240247 |
caaagagaatcaaatctaaaaccttgagaggagcacatttgaa |
240289 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 24066533 - 24066589
Alignment:
| Q |
15 |
caaagggaatcaaatctaaaaccttgagaggagcacatttgaaggttacaaaccaac |
71 |
Q |
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| T |
24066533 |
caaagggaatcaaatctgataccttgagagaagcacattccaagattacaaaccaac |
24066589 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 35328875 - 35328927
Alignment:
| Q |
21 |
gaatcaaatctaaaaccttgagaggagcacatttgaaggttacaaaccaacac |
73 |
Q |
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| T |
35328875 |
gaatcaaacctaaaaccttgagagaagcacactcgaaggttccaagccaacac |
35328927 |
T |
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