View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17259_low_60 (Length: 220)
Name: NF17259_low_60
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17259_low_60 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 34 - 178
Target Start/End: Complemental strand, 25330515 - 25330371
Alignment:
| Q |
34 |
catttcctaatgttatgcttttgcattttctttatactcatgtatgattattcccaaatgatataacacattctattagtctcttgacattctgttgctc |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25330515 |
catttcctaatgttatgcttttgcattttctttatattcatgtatgattattcccaaataatataacacattctattagtctcttgacattctgttgctc |
25330416 |
T |
|
| Q |
134 |
attaagatcaaaccatatatatttgaagcatgacatgttagaaca |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25330415 |
attaagatcaaaccatatatatttgaagcatgacatgttagaaca |
25330371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 37 - 154
Target Start/End: Original strand, 9988563 - 9988680
Alignment:
| Q |
37 |
ttcctaatgttatgcttttgcattttctttatactcatgtatgattattcccaaatgatataacacattctattagtctcttgacattctgttgctcatt |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||| || |||||||||||||||||||| |
|
|
| T |
9988563 |
ttcctaatgttatgcttttgcattttctttatattcatgtatgattattcccaaatgatataacacattgtactagacttttgacattctgttgctcatt |
9988662 |
T |
|
| Q |
137 |
aagatcaaaccatatata |
154 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
9988663 |
aagatcaaaccatatata |
9988680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 37 - 157
Target Start/End: Original strand, 21725430 - 21725550
Alignment:
| Q |
37 |
ttcctaatgttatgcttttgcattttctttatactcatgtatgattattcccaaatgatataacacattctattagtctcttgacattctgttgctcatt |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||| | |||||||| ||||||||||| |
|
|
| T |
21725430 |
ttcctaatgttatgcttttgcattttctttatattcatgtatgattattcccaaatgatataacacattgtagtagtattttgacattatgttgctcatt |
21725529 |
T |
|
| Q |
137 |
aagatcaaaccatatatattt |
157 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
21725530 |
aagatcaaaccatatatattt |
21725550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 37 - 157
Target Start/End: Original strand, 21805155 - 21805275
Alignment:
| Q |
37 |
ttcctaatgttatgcttttgcattttctttatactcatgtatgattattcccaaatgatataacacattctattagtctcttgacattctgttgctcatt |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||| | |||||||| ||||||||||| |
|
|
| T |
21805155 |
ttcctaatgttatgcttttgcattttctttatattcatgtatgattattcccaaatgatataacacattgtagtagtattttgacattatgttgctcatt |
21805254 |
T |
|
| Q |
137 |
aagatcaaaccatatatattt |
157 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
21805255 |
aagatcaaaccatatatattt |
21805275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 37 - 157
Target Start/End: Original strand, 14331527 - 14331647
Alignment:
| Q |
37 |
ttcctaatgttatgcttttgcattttctttatactcatgtatgattattcccaaatgatataacacattctattagtctcttgacattctgttgctcatt |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| || |||| | |||||||||| ||||||||| |
|
|
| T |
14331527 |
ttcctaatgttatgcttttgcattttctttttattcatgtatgattattcccaaatgatataacacattgtagtagtattttgacattctattgctcatt |
14331626 |
T |
|
| Q |
137 |
aagatcaaaccatatatattt |
157 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
14331627 |
aagatcaaaccatatatattt |
14331647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University