View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17259_low_61 (Length: 215)
Name: NF17259_low_61
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17259_low_61 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 51 - 199
Target Start/End: Complemental strand, 50510756 - 50510606
Alignment:
| Q |
51 |
aagttactcaattcattactctgcattatgaactattttgatccaatttaacgttcnnnnnnnggcagagcccactaaagtgtttgaaaagaatattttc |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50510756 |
aagttactcaattcattactctgcattatgaactattttgatccaatttaacgttctttttttggcagagcccactaaagtgtttgaaaagaatattttc |
50510657 |
T |
|
| Q |
151 |
ttaa--atatatttatatttaatttcctttagtgaagaagtcattaaatct |
199 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50510656 |
ttaaatatatatatatatttaatttcctttagtgaagaagtcattaaatct |
50510606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University