View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17259_low_7 (Length: 602)
Name: NF17259_low_7
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17259_low_7 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 19 - 590
Target Start/End: Complemental strand, 1848234 - 1847656
Alignment:
| Q |
19 |
gaattgtaatgtttggtttgaattttaagtatatgaatttggtcaaatttggttccttacatttgtaaattttggtacatatatatagactcaatgaaat |
118 |
Q |
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| T |
1848234 |
gaattgttatgtttggtttgaatttgaagtatatgaatttggtcaaatttggttccttacatttgtaaattttggtacatatatatagactcaatgaaat |
1848135 |
T |
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| Q |
119 |
gaaatgcgacgagtcgtaactaactcttatgtgaaagtagtgagatgcaggaagcaacgccgaaacgtggtgtgctcggtgcctcctcctaccacccagg |
218 |
Q |
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| T |
1848134 |
gaaatgcgacgagtcgtaactaactcttttgtgaaagtggtgagatgcaggaagcaacgccgaaacgtggtgtgctcggtgcctcctcctaccacccagg |
1848035 |
T |
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| Q |
219 |
cgttcctcttgccgtgtgcatcatttaat---aatactaataacaaannnnnnnnnataatatagtactctactcaaccgtcacactctccatattgtta |
315 |
Q |
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| T |
1848034 |
cgttcctcttgccgtgtgcatcatttaataataatattaataacaatattttttttataatatagtactctactcaaccgtcacactctcgatattgtta |
1847935 |
T |
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| Q |
316 |
gattgaatattttcactcaacaaatttccattgtatgagtttacaat--nnnnnnntaacaataattttataacatcaaaaaataaatattttcgtgata |
413 |
Q |
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| T |
1847934 |
gattgaatattt----ccaacaaatttccattgtatgagtttacaataaaaaaaaataacaataattttatatcgtcaaaaaataaatattttcgtgata |
1847839 |
T |
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| Q |
414 |
tcatccttagaatttcttatttaaataattagtataa------nnnnnnncatggaggtagaaaatgatatctcaaagtttacattacttgcaaattgtg |
507 |
Q |
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| T |
1847838 |
tcatccttataatttcttatttaaataattagtataatatttttttttttaatggaggtagaaaatgatatctcaaagtttacattacttgcaaattgtg |
1847739 |
T |
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| Q |
508 |
tgtttagatgtatacaataatttgataataatttttggacaatttcatcttttatacttacattatgtttatattctctcttc |
590 |
Q |
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| T |
1847738 |
tgtttagatgtatacaataattttatgataatttttggacaatttcatcttttatacttacattatgttcatattctctcttc |
1847656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 535 - 573
Target Start/End: Original strand, 395891 - 395929
Alignment:
| Q |
535 |
ataatttttggacaatttcatcttttatacttacattat |
573 |
Q |
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| T |
395891 |
ataattttttgacaatttcatctttcatacttacattat |
395929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 555 - 588
Target Start/End: Original strand, 29533799 - 29533832
Alignment:
| Q |
555 |
tcttttatacttacattatgtttatattctctct |
588 |
Q |
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| T |
29533799 |
tcttttatacttacattatgtttttattctctct |
29533832 |
T |
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