View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17259_low_8 (Length: 597)
Name: NF17259_low_8
Description: NF17259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17259_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 552; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 15 - 582
Target Start/End: Original strand, 8775583 - 8776150
Alignment:
| Q |
15 |
tatgcagaatttttgagtacatatactggtgaagaggttgatgaaacggatgaagattatggaaatacggatgctttaattgataaaaataatcagacta |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8775583 |
tatgcagaatttttgagtacatatactggtgaagaggttgatgaaacggatgaagattatggaaatacggatgctttaattgataaaaataatcagacta |
8775682 |
T |
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| Q |
115 |
tagatgatgatgcagatgaagattatatgaaatttttgagtggatatatcagtgaagacgatgatgaaacggatgaagattatcgatcctttttgactac |
214 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8775683 |
tagatgatgatgcagatgaggattatatgaaatttttgagtggatataccagtgaagacgatgatgaaacggatgaagattatcgatcctttttgactac |
8775782 |
T |
|
| Q |
215 |
atatgatcctgatattctaactgattgttctagtaatcacagtggaggttcaaatggcaacaacagtggcagtgatgaaacggatgcagattacgcagcc |
314 |
Q |
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| T |
8775783 |
atatgatcctgatattctaactgattgttctagtaatcacaatggaggttcaaatggcaacaacagtggcagtgatgaaacggatgcagattacgcagcc |
8775882 |
T |
|
| Q |
315 |
tttttgcctacatataatcccgatgatagtggaattgattgtgctagtaatcacagtggttcaaatattgacgtcaactttgacgacaacactggcaggg |
414 |
Q |
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| T |
8775883 |
tttttgcctacatataatcctgatgatagtggaattgattgtgctagtaatcacagtggttcaaatattgacgtcaactttgacgacaacactggcaggg |
8775982 |
T |
|
| Q |
415 |
aggatgtaggagaaggttgcagttattttccgaatcaatctgtttctgatcatattagtgatggtgttggtgtagatgaagatgatcagttactaggaaa |
514 |
Q |
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| T |
8775983 |
aggatgtaggagaaggttgcagttattttccgaatcaatctgtttctgatcatattagtgatggtgttggtgtagatgaagatgatcagttactaggaaa |
8776082 |
T |
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| Q |
515 |
aagttcaagtgttaggcgaaattcactcgtttctgatcaggaatttgatactcctgaagtgcagtttg |
582 |
Q |
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| T |
8776083 |
aagttcaagtgttaggcgaaattcactcgtttctgatcaggaatttgatactcctgaagtgcagtttg |
8776150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 8775471 - 8775642
Alignment:
| Q |
26 |
tttgagtacatatactggtgaagaggttgatgaaacggatgaagattatggaaatacggatgctttaattgataaaaataatcagactatagatgatgat |
125 |
Q |
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| T |
8775471 |
tttgagtgcaaataccggtgaagatgatgatgaaatgggtgaagatcatggaaatacggctgctttaattgataaaaacgatcatactatagatgatgag |
8775570 |
T |
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| Q |
126 |
gcagatgaagattatatgaaatttttgagtggatatatcagtgaagacgatgatgaaacggatgaagattat |
197 |
Q |
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| T |
8775571 |
gctgatgaagattatgcagaatttttgagtacatatactggtgaagaggttgatgaaacggatgaagattat |
8775642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 26 - 194
Target Start/End: Original strand, 8775345 - 8775516
Alignment:
| Q |
26 |
tttgagtacatatactggtgaagaggttgatgaaacggatgaagattatggaaatacggatgctttaattgataaaaataatcagactataga---tgat |
122 |
Q |
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| T |
8775345 |
tttgagtgcaaataccggtgaagatgatgataaaatggatgaagatcatggaaatatggccgctttaattgataaaaatgatcatgtgatagagtgtgat |
8775444 |
T |
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| Q |
123 |
gatgcagatgaagattatatgaaatttttgagtggatatatcagtgaagacgatgatgaaacggatgaagat |
194 |
Q |
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| T |
8775445 |
gcagcagatgaagataatgtgaacaatttgagtgcaaataccggtgaagatgatgatgaaatgggtgaagat |
8775516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 506 - 541
Target Start/End: Original strand, 8782010 - 8782045
Alignment:
| Q |
506 |
actaggaaaaagttcaagtgttaggcgaaattcact |
541 |
Q |
| |
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| T |
8782010 |
actaggaaaaagttcaagtgttaagcgaaattcact |
8782045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 502
Target Start/End: Original strand, 8787617 - 8787653
Alignment:
| Q |
466 |
atattagtgatggtgttggtgtagatgaagatgatca |
502 |
Q |
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| T |
8787617 |
atattagcgatgatgttggtgtagatgaagatgatca |
8787653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 502
Target Start/End: Original strand, 8787785 - 8787821
Alignment:
| Q |
466 |
atattagtgatggtgttggtgtagatgaagatgatca |
502 |
Q |
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|||||||||||| ||||||||||||||||| |||||| |
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| T |
8787785 |
atattagtgatgatgttggtgtagatgaaggtgatca |
8787821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 200 - 374
Target Start/End: Complemental strand, 2541830 - 2541659
Alignment:
| Q |
200 |
atcctttttgactacatatgatcctgatattctaactgattgttctagtaatcacagtggaggttcaaatggcaacaacagtggcagtgatgaaacggat |
299 |
Q |
| |
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|||||||||| |||| |||||||||||||| ||||| |||| | |||||||| ||| | ||||||||||||||||||| || ||||||||||| ||| |
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| T |
2541830 |
atcctttttgtgtacacatgatcctgatattgaaactggttgtgcaagtaatcagagtagtggttcaaatggcaacaacaatgacagtgatgaaatggac |
2541731 |
T |
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| Q |
300 |
gcagattacgcagcctttttgcctacatataatcccgatgatagtggaattgattgtgctagtaatcacagtggt |
374 |
Q |
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| T |
2541730 |
gcagattatgcatcctatctggctgcttgtaatc---ttgatagtgaaactgattgtgctagtaatcatagtggt |
2541659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 360
Target Start/End: Complemental strand, 2542206 - 2542111
Alignment:
| Q |
262 |
gttcaaatggcaacaacagtggcagtgatgaaacggatgcagattacgcagcctttttgcctacatataatcccgatgatagtggaattgattgtgcta |
360 |
Q |
| |
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|||||||||||||||||| || || |||||||| |||||||||||| || |||||||| |||| ||||||| |||||| || || ||||||||||| |
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| T |
2542206 |
gttcaaatggcaacaacaatgacattgatgaaatcgatgcagattacacatcctttttggctacttataatc---atgatattgaaactgattgtgcta |
2542111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 374
Target Start/End: Complemental strand, 2542073 - 2541986
Alignment:
| Q |
284 |
cagtgatgaaacggatgcagattacgcagcctttttgcctacatataatcccgatgatagtggaattgattgtgctagtaatcacagtggt |
374 |
Q |
| |
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|||||||||| |||| ||||||||||| ||| |||| |||| ||||||| |||||| || || |||||||||||||||||| |||||| |
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| T |
2542073 |
cagtgatgaagtggattcagattacgcatcctatttggctacttataatc---atgatattgaaactgattgtgctagtaatcatagtggt |
2541986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 2542271 - 2542213
Alignment:
| Q |
179 |
tgaaacggatgaagattatcgatcctttttgactacatatgatcctgatattctaactg |
237 |
Q |
| |
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||||| ||||||||||| ||||||||||| ||||| ||||||||||||||| ||||| |
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| T |
2542271 |
tgaaatggatgaagattgcggatcctttttgcctacacatgatcctgatattcaaactg |
2542213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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