View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1725_high_3 (Length: 317)
Name: NF1725_high_3
Description: NF1725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1725_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 30689803 - 30689587
Alignment:
| Q |
1 |
agaggaggaagaagggtttggctgggaacatttgatagtgctgaagatggtgctttagcttatgatcaagctgcattttcaatgagaggtgataatgttg |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||| || |
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| T |
30689803 |
agaggaggaagaagggtttggcttggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagaggttatgatgctg |
30689704 |
T |
|
| Q |
101 |
tcctcaatttttctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagagaagggtcttcacctgcacttgcactcaaggatagaca |
200 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || || || |
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| T |
30689703 |
tgctcaatttttctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagagaagggtcttcacctgcacttgcactaaaagagaggca |
30689604 |
T |
|
| Q |
201 |
ctataatcaaagaaaga |
217 |
Q |
| |
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|||| | |||||||||| |
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| T |
30689603 |
ctatgaacaaagaaaga |
30689587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 30718846 - 30718630
Alignment:
| Q |
1 |
agaggaggaagaagggtttggctgggaacatttgatagtgctgaagatggtgctttagcttatgatcaagctgcattttcaatgagaggtgataatgttg |
100 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||| || |
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| T |
30718846 |
agaggaggaagaagggtttggcttggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagaggttatgatgctg |
30718747 |
T |
|
| Q |
101 |
tcctcaatttttctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagagaagggtcttcacctgcacttgcactcaaggatagaca |
200 |
Q |
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| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || || || || |
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| T |
30718746 |
tgctcaatttttctgttcaaagggtcaaagaatctttgcaagcgattcaatatgattgcagagaagggtcttcacctgcacttgcactaaaagagaggca |
30718647 |
T |
|
| Q |
201 |
ctataatcaaagaaaga |
217 |
Q |
| |
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|||| | |||||||||| |
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| T |
30718646 |
ctatgaacaaagaaaga |
30718630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 12 - 215
Target Start/End: Complemental strand, 30671897 - 30671694
Alignment:
| Q |
12 |
aagggtttggctgggaacatttgatagtgctgaagatggtgctttagcttatgatcaagctgcattttcaatgagaggtgataatgttgtcctcaatttt |
111 |
Q |
| |
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|||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||| |
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| T |
30671897 |
aagggtttggcttggaacatttgacagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagaggtaataatgccgtgctcaatttt |
30671798 |
T |
|
| Q |
112 |
tctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagagaagggtcttcacctgcacttgcactcaaggatagacactataatcaaa |
211 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | | |||| |
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| T |
30671797 |
tctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagagaagggtcttcacctgcacttgcactcaaggagagacactgtgaacaaa |
30671698 |
T |
|
| Q |
212 |
gaaa |
215 |
Q |
| |
|
|||| |
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|
| T |
30671697 |
gaaa |
30671694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 30710572 - 30710358
Alignment:
| Q |
1 |
agaggaggaagaagggtttggctgggaacatttgatagtgctgaagatggtgctttagcttatgatcaagctgcattttcaatgagaggtgataatgttg |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
30710572 |
agaggaggaagaagggtttggctaggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagaggtaataatgctt |
30710473 |
T |
|
| Q |
101 |
tcctcaatttttctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagagaagggtcttcacctgcacttgcactcaaggatagaca |
200 |
Q |
| |
|
|||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||| |
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| T |
30710472 |
tcctcaatttttctttcgaaagcgtcaaagaatctttgcaagagattcaatatgattgcagaaaagggtcttcacctgcacttgcactcaaagagagaca |
30710373 |
T |
|
| Q |
201 |
ctataatcaaagaaa |
215 |
Q |
| |
|
||| || |||||||| |
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|
| T |
30710372 |
ctacaaccaaagaaa |
30710358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 30698689 - 30698475
Alignment:
| Q |
1 |
agaggaggaagaagggtttggctgggaacatttgatagtgctgaagatggtgctttagcttatgatcaagctgcattttcaatgagaggtgataatgttg |
100 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||| || |
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| T |
30698689 |
agaggaggaagaagagtttggctaggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattctcaatgagaggtaataatgctg |
30698590 |
T |
|
| Q |
101 |
tcctcaatttttctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagagaagggtcttcacctgcacttgcactcaaggatagaca |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| || || || || |
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| T |
30698589 |
tgctcaatttttctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagaaaaggatcttcacctgcacttgcactaaaagaaaggca |
30698490 |
T |
|
| Q |
201 |
ctataatcaaagaaa |
215 |
Q |
| |
|
|||| | |||||||| |
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|
| T |
30698489 |
ctatgaacaaagaaa |
30698475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 12 - 216
Target Start/End: Complemental strand, 30656736 - 30656532
Alignment:
| Q |
12 |
aagggtttggctgggaacatttgatagtgctgaagatggtgctttagcttatgatcaagctgcattttcaatgagaggtgataatgttgtcctcaatttt |
111 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||| |
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|
| T |
30656736 |
aagggtttggttaggaacatttgatagtgctgaagatgctgctttagcttatgatcaagctgcattttcaatgagaggtaataatgctgtgctcaatttt |
30656637 |
T |
|
| Q |
112 |
tctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagagaagggtcttcacctgcacttgcactcaaggatagacactataatcaaa |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| || || || |||||| | |||| |
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|
| T |
30656636 |
tctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagaaaaggatcttcacctgcacttgcactaaaagagaggcactatgaacaaa |
30656537 |
T |
|
| Q |
212 |
gaaag |
216 |
Q |
| |
|
||||| |
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|
| T |
30656536 |
gaaag |
30656532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 16252144 - 16252066
Alignment:
| Q |
12 |
aagggtttggctgggaacatttgatagtgctgaagatggtgctttagcttatgatcaagctgcattttcaatgagaggt |
90 |
Q |
| |
|
|||||| ||| | |||||||||||||||||||||| | || ||||||||||||||||||| ||||||||||||||| |
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|
| T |
16252144 |
aagggtatggttaggaacatttgatagtgctgaagcagcagcactagcttatgatcaagctgctttttcaatgagaggt |
16252066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 33042601 - 33042678
Alignment:
| Q |
13 |
agggtttggctgggaacatttgatagtgctgaagatggtgctttagcttatgatcaagctgcattttcaatgagaggt |
90 |
Q |
| |
|
||||| ||||| ||||| ||||||||||| |||| || |||||| |||||||||||||| || ||||| ||||||||| |
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|
| T |
33042601 |
agggtgtggctaggaacctttgatagtgcagaagctgctgctttggcttatgatcaagcagctttttccatgagaggt |
33042678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 301
Target Start/End: Complemental strand, 30689297 - 30689213
Alignment:
| Q |
219 |
agaaactaaatttgagctcaaa-gagtactagtagaagtattcattgaac-nnnnnnnncatgacaagtaccttaatgcaaatag |
301 |
Q |
| |
|
|||||| ||||||||||||||| |||||| ||||| |||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
30689297 |
agaaacaaaatttgagctcaaaagagtacgagtagtagtattcattgaacatataaaaacatgacaagtaccttaatgcaaatag |
30689213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 6 - 175
Target Start/End: Original strand, 56539176 - 56539345
Alignment:
| Q |
6 |
aggaagaagggtttggctgggaacatttgatagtgctgaagatggtgctttagcttatgatcaagctgcattttcaatgagaggtgataatgttgtcctc |
105 |
Q |
| |
|
||||||||| |||||||| ||||||||||| |||||||| |||| |||||||||||| |||||||||||||||||| |||||||| |||||||||| ||| |
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|
| T |
56539176 |
aggaagaagtgtttggcttggaacatttgacagtgctgaggatgctgctttagcttacgatcaagctgcattttcattgagaggtaataatgttgtgctc |
56539275 |
T |
|
| Q |
106 |
aatttttctgttcaaagggtcaaagaatctttgcaagagattcaatatgattgcagagaagggtcttcac |
175 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || ||||| |
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|
| T |
56539276 |
aatttttctgttcaaagggtcaaaggatatttgcaagagattcaatatgattgcagagaagagttttcac |
56539345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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