View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1725_high_4 (Length: 314)

Name: NF1725_high_4
Description: NF1725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1725_high_4
NF1725_high_4
[»] chr5 (27 HSPs)
chr5 (1-278)||(32734150-32734428)
chr5 (15-253)||(40058063-40058302)
chr5 (14-244)||(2167346-2167576)
chr5 (14-238)||(5383002-5383225)
chr5 (118-296)||(42510114-42510295)
chr5 (14-253)||(12933796-12934035)
chr5 (14-253)||(12947957-12948196)
chr5 (122-283)||(12862857-12863021)
chr5 (122-279)||(12830877-12831037)
chr5 (32-256)||(19525138-19525362)
chr5 (15-256)||(38471331-38471573)
chr5 (93-256)||(223268-223432)
chr5 (192-279)||(22819558-22819648)
chr5 (103-248)||(15856584-15856729)
chr5 (226-296)||(42511710-42511782)
chr5 (106-202)||(14210240-14210336)
chr5 (176-279)||(15857611-15857717)
chr5 (157-238)||(5977047-5977129)
chr5 (93-151)||(24761627-24761685)
chr5 (122-229)||(22819456-22819564)
chr5 (211-279)||(8188229-8188299)
chr5 (187-256)||(12950264-12950334)
chr5 (103-256)||(18693740-18693894)
chr5 (226-296)||(24761765-24761836)
chr5 (211-277)||(30253605-30253673)
chr5 (243-296)||(12829570-12829625)
chr5 (187-238)||(38473559-38473611)
[»] chr4 (40 HSPs)
chr4 (1-279)||(50530520-50530800)
chr4 (1-235)||(6140177-6140413)
chr4 (118-282)||(34438420-34438587)
chr4 (14-207)||(52660046-52660238)
chr4 (15-207)||(31712339-31712530)
chr4 (38-256)||(11114836-11115054)
chr4 (1-207)||(28102168-28102365)
chr4 (15-283)||(17319055-17319327)
chr4 (103-249)||(26393047-26393194)
chr4 (103-248)||(3533528-3533674)
chr4 (145-279)||(41349487-41349624)
chr4 (122-279)||(43419314-43419474)
chr4 (180-296)||(50531753-50531872)
chr4 (103-238)||(38370342-38370479)
chr4 (122-278)||(44159103-44159262)
chr4 (19-238)||(48207556-48207773)
chr4 (177-296)||(34439654-34439776)
chr4 (93-196)||(38555186-38555289)
chr4 (103-253)||(56000332-56000483)
chr4 (16-180)||(40144655-40144821)
chr4 (180-279)||(6139014-6139116)
chr4 (192-278)||(38417571-38417660)
chr4 (175-254)||(11113786-11113866)
chr4 (122-237)||(29663703-29663819)
chr4 (103-233)||(35787861-35787992)
chr4 (103-237)||(56296254-56296389)
chr4 (118-207)||(17494219-17494308)
chr4 (118-178)||(13533193-13533253)
chr4 (211-296)||(41348239-41348326)
chr4 (190-256)||(5687217-5687284)
chr4 (116-199)||(47668530-47668613)
chr4 (103-256)||(6616131-6616285)
chr4 (221-296)||(43418033-43418110)
chr4 (226-296)||(5417304-5417376)
chr4 (118-147)||(5591380-5591409)
chr4 (118-147)||(27847832-27847861)
chr4 (211-256)||(30683056-30683101)
chr4 (192-256)||(33377373-33377438)
chr4 (103-184)||(44302835-44302916)
chr4 (118-147)||(48126961-48126990)
[»] chr7 (23 HSPs)
chr7 (2-278)||(10256141-10256419)
chr7 (14-256)||(46458543-46458787)
chr7 (15-279)||(131832-132098)
chr7 (15-253)||(25154767-25155007)
chr7 (14-207)||(24872082-24872274)
chr7 (16-248)||(33459377-33459609)
chr7 (111-284)||(27899142-27899318)
chr7 (180-296)||(10257385-10257502)
chr7 (157-256)||(43930361-43930461)
chr7 (116-279)||(4167468-4167634)
chr7 (116-283)||(41516277-41516447)
chr7 (127-238)||(26406185-26406297)
chr7 (160-279)||(35315199-35315321)
chr7 (122-279)||(35484249-35484409)
chr7 (116-256)||(38406060-38406200)
chr7 (117-256)||(28325114-28325254)
chr7 (159-253)||(13286970-13287065)
chr7 (118-178)||(9662169-9662229)
chr7 (157-256)||(40930460-40930560)
chr7 (117-184)||(14109005-14109072)
chr7 (117-184)||(14418962-14419029)
chr7 (103-253)||(45719660-45719811)
chr7 (192-256)||(19278395-19278460)
[»] chr3 (34 HSPs)
chr3 (1-279)||(35174202-35174481)
chr3 (15-279)||(12062216-12062483)
chr3 (16-279)||(23559836-23560102)
chr3 (15-279)||(48867267-48867529)
chr3 (122-279)||(21127942-21128102)
chr3 (103-279)||(43346367-43346546)
chr3 (14-279)||(49333000-49333265)
chr3 (14-200)||(51400314-51400500)
chr3 (11-256)||(26798734-26798980)
chr3 (180-296)||(35173147-35173266)
chr3 (158-256)||(25583156-25583255)
chr3 (118-178)||(24403363-24403423)
chr3 (103-248)||(53808368-53808514)
chr3 (192-256)||(54653975-54654040)
chr3 (215-284)||(12060670-12060741)
chr3 (118-178)||(40364443-40364503)
chr3 (103-282)||(39133031-39133213)
chr3 (190-256)||(51825628-51825695)
chr3 (193-279)||(43345336-43345425)
chr3 (118-169)||(20314696-20314747)
chr3 (210-282)||(48866155-48866229)
chr3 (103-256)||(11219472-11219626)
chr3 (192-256)||(11220667-11220732)
chr3 (118-147)||(20286704-20286733)
chr3 (118-147)||(20335403-20335432)
chr3 (118-147)||(20336589-20336618)
chr3 (118-147)||(21074212-21074241)
chr3 (198-279)||(23561140-23561224)
chr3 (192-248)||(29536764-29536821)
chr3 (103-184)||(32979203-32979284)
chr3 (118-147)||(53624294-53624323)
chr3 (118-178)||(18442372-18442432)
chr3 (118-178)||(19487446-19487506)
chr3 (103-179)||(48254809-48254885)
[»] chr8 (29 HSPs)
chr8 (93-296)||(20308605-20308811)
chr8 (93-296)||(21095238-21095444)
chr8 (14-279)||(2421124-2421392)
chr8 (14-279)||(8095363-8095632)
chr8 (14-279)||(13366883-13367149)
chr8 (15-237)||(35943969-35944191)
chr8 (14-256)||(44606181-44606423)
chr8 (14-248)||(19913542-19913775)
chr8 (14-256)||(36070220-36070466)
chr8 (14-180)||(37324521-37324685)
chr8 (103-253)||(24069366-24069517)
chr8 (192-296)||(8096554-8096661)
chr8 (175-296)||(22619895-22620019)
chr8 (118-282)||(39220693-39220860)
chr8 (103-249)||(34617115-34617262)
chr8 (116-253)||(7486122-7486260)
chr8 (115-248)||(37472453-37472586)
chr8 (93-231)||(31871462-31871594)
chr8 (11-207)||(8395087-8395282)
chr8 (103-253)||(37276163-37276314)
chr8 (118-207)||(45194575-45194664)
chr8 (103-199)||(10052204-10052300)
chr8 (145-248)||(16363774-16363878)
chr8 (211-296)||(22621163-22621250)
chr8 (190-256)||(19914913-19914980)
chr8 (212-279)||(34616146-34616215)
chr8 (14-51)||(29738518-29738555)
chr8 (157-256)||(36756106-36756206)
chr8 (210-279)||(43386730-43386801)
[»] chr1 (36 HSPs)
chr1 (14-296)||(22167779-22168058)
chr1 (15-296)||(51726676-51726960)
chr1 (93-284)||(14169631-14169824)
chr1 (14-248)||(13930507-13930741)
chr1 (14-248)||(14071036-14071269)
chr1 (105-248)||(21277044-21277188)
chr1 (116-279)||(8092615-8092781)
chr1 (118-275)||(19466140-19466300)
chr1 (118-279)||(36509828-36509992)
chr1 (145-279)||(40109378-40109515)
chr1 (149-296)||(24517580-24517730)
chr1 (177-296)||(36511325-36511447)
chr1 (14-83)||(21277263-21277332)
chr1 (15-72)||(38281058-38281115)
chr1 (38-148)||(40811403-40811512)
chr1 (157-279)||(14764246-14764371)
chr1 (157-283)||(26801956-26802085)
chr1 (169-296)||(40811195-40811325)
chr1 (117-254)||(2972942-2973080)
chr1 (176-296)||(40812604-40812725)
chr1 (217-278)||(14765129-14765192)
chr1 (178-277)||(19464619-19464721)
chr1 (211-279)||(40110681-40110751)
chr1 (103-253)||(49141416-49141567)
chr1 (103-256)||(26056067-26056221)
chr1 (192-256)||(3979322-3979387)
chr1 (116-256)||(9633817-9633958)
chr1 (190-256)||(13641299-13641366)
chr1 (117-184)||(13642491-13642558)
chr1 (29-71)||(13642408-13642450)
chr1 (116-198)||(44977322-44977404)
chr1 (192-256)||(3978086-3978151)
chr1 (120-169)||(30535603-30535652)
chr1 (211-256)||(50679850-50679895)
chr1 (103-184)||(51218886-51218967)
chr1 (211-296)||(24516334-24516421)
[»] chr2 (26 HSPs)
chr2 (14-279)||(14509226-14509493)
chr2 (20-279)||(25570708-25570969)
chr2 (15-254)||(7037010-7037249)
chr2 (15-256)||(37868872-37869114)
chr2 (14-181)||(10367357-10367524)
chr2 (21-200)||(11575326-11575503)
chr2 (1-178)||(12959523-12959700)
chr2 (93-279)||(7490107-7490294)
chr2 (15-254)||(35799556-35799795)
chr2 (124-254)||(4829509-4829640)
chr2 (103-256)||(12852928-12853082)
chr2 (103-235)||(28109789-28109922)
chr2 (19-238)||(42249621-42249838)
chr2 (122-296)||(15850598-15850775)
chr2 (190-278)||(14510516-14510607)
chr2 (187-278)||(3533630-3533724)
chr2 (116-279)||(7983628-7983794)
chr2 (157-279)||(3532211-3532336)
chr2 (117-202)||(8537109-8537194)
chr2 (225-279)||(15850129-15850185)
chr2 (116-147)||(28562740-28562771)
chr2 (210-256)||(12854132-12854178)
chr2 (211-278)||(25569787-25569856)
chr2 (157-279)||(32614402-32614527)
chr2 (157-201)||(5727459-5727503)
chr2 (216-256)||(7038366-7038406)
[»] chr6 (20 HSPs)
chr6 (14-256)||(31738405-31738648)
chr6 (113-284)||(14328704-14328878)
chr6 (113-284)||(14421714-14421888)
chr6 (15-238)||(293474-293696)
chr6 (15-279)||(9927623-9927889)
chr6 (15-237)||(27440006-27440230)
chr6 (15-233)||(16268606-16268824)
chr6 (15-73)||(14327258-14327316)
chr6 (15-73)||(14420268-14420326)
chr6 (187-279)||(14326170-14326265)
chr6 (187-279)||(14419180-14419275)
chr6 (212-296)||(13800031-13800117)
chr6 (103-199)||(18139407-18139503)
chr6 (117-184)||(22298719-22298786)
chr6 (190-256)||(22299910-22299977)
chr6 (127-205)||(2130877-2130955)
chr6 (29-71)||(22298827-22298869)
chr6 (212-278)||(31740302-31740370)
chr6 (122-182)||(12773187-12773247)
chr6 (118-178)||(15728854-15728914)
[»] scaffold0122 (2 HSPs)
scaffold0122 (15-207)||(16037-16228)
scaffold0122 (182-278)||(17159-17258)
[»] scaffold0003 (1 HSPs)
scaffold0003 (15-237)||(47131-47355)
[»] scaffold0025 (1 HSPs)
scaffold0025 (103-256)||(56620-56774)
[»] scaffold0098 (1 HSPs)
scaffold0098 (192-279)||(42355-42445)
[»] scaffold0178 (2 HSPs)
scaffold0178 (176-256)||(2258-2339)
scaffold0178 (19-67)||(1440-1488)
[»] scaffold1974 (1 HSPs)
scaffold1974 (103-256)||(548-702)
[»] scaffold1878 (1 HSPs)
scaffold1878 (103-256)||(572-726)
[»] scaffold0290 (1 HSPs)
scaffold0290 (103-256)||(9398-9552)
[»] scaffold0166 (2 HSPs)
scaffold0166 (93-151)||(4124-4182)
scaffold0166 (226-296)||(4262-4333)
[»] scaffold0046 (1 HSPs)
scaffold0046 (210-279)||(23423-23494)


Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 32734428 - 32734150
Alignment:
Q  1 gaagaagaaataagaaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||    
T  32734428 gaagaagaaataagaaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccattttaaaaaaat-atcaaac 32734330  T
Q  101 ccttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaat 200  Q
      ||||||||||||||||||||||||||||||||||||||||||| ||| | ||| |||||||| ||||||| |||||||||||  ||||||||||||||    
T  32734329 tgttaaaaataaaagatttaataaggtctatggtggactatctattaaggttgttcaccttagatatttaagattaaaaactaacggaaatgaccaaaat 32734230  T
Q  201 agtaaac-atagaagagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaa 278  Q
    ||||||| | |||||||||||||| ||||||| ||||| |||||||||||||||||  |||||||||||||||||||||||    
T  32734229 agtaaacgacagaagagttatgggaccaaattaagaca-ctaatagttaagggaccaaactgaaaaaataaaataagttaa 32734150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 40058302 - 40058063
Alignment:
Q  15 aaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataaaa 114  Q
    |||||||||| ||||| ||||| |||| |||||||||||||| |||| |||||||||||||||||||||         ||||||||  ||||||||||||    
T  40058302 aaaaaattagttgtttctggttaattacaagctacaatagattcctctatgatccaacggtctccattttaaaaaaaagatcaaacagttaaaaataaaa 40058203  T
Q  115 gatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-atagaa 213  Q
    ||||||||||||||||||||||||||  ||||||||| ||| |||||||||||||||| |||||||||||  || ||||||||||| ||||||   ||||    
T  40058202 gatttaataaggtctatggtggactacttataaagttggttcaccttagacatttaagattaaaaactaacggagatgaccaaaatggtaaacggcagaa 40058103  T
Q  214 gagttatggggccaaattgagacacctaatagttaaggga 253  Q
    |||||||| | |||| |||| |||| ||||||||||||||    
T  40058102 gagttatgagaccaatttgaaacacttaatagttaaggga 40058063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 2167346 - 2167576
Alignment:
Q  14 gaaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataaa 113  Q
    ||||||||||||||||||||||| ||||||| |||||||||||| |||  |||||||| |||||||||||          |||||||  |||| ||||||    
T  2167346 gaaaaaattaggtgtttgtggttcattataaactacaatagatctctcattgatccaatggtctccatttaaaaaaaaaaatcaaacggttaataataaa 2167445  T
Q  114 agatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-ataga 212  Q
    ||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||| ||| | |||||||||| |||||   |||    
T  2167446 agatttaataaggtctatggtggaccatctataaagttggttcaccttagacatttaaggttaaaaactaacagaga-gaccaaaataataaacggcaga 2167544  T
Q  213 agagttatggggccaaattgagacacctaata 244  Q
    ||| ||||||| ||||||||| |||| |||||    
T  2167545 agatttatgggaccaaattgaaacacttaata 2167576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 14 - 238
Target Start/End: Complemental strand, 5383225 - 5383002
Alignment:
Q  14 gaaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataaa 113  Q
    ||||||||| |||||||||||||  ||||||||||||||||||||||||||||||  | | ||| |||||         | ||||||   ||| ||||||    
T  5383225 gaaaaaatttggtgtttgtggttcgttataagctacaatagatccctccatgatc--atgatcttcatttaaaaaaaaagttcaaacgactaagaataaa 5383128  T
Q  114 agatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-ataga 212  Q
    ||||||||||||||||||||||||| | ||||||||||  || ||||||||||||||||||||||||||||  || | || ||||||||||||| |   |    
T  5383127 agatttaataaggtctatggtggaccacctataaagttgattcaccttagacatttaaggttaaaaactaacggagaggatcaaaatagtaaacgaccaa 5383028  T
Q  213 agagttatggggccaaattgagacac 238  Q
    ||| ||||||| ||||||||||||||    
T  5383027 agatttatgggaccaaattgagacac 5383002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 118 - 296
Target Start/End: Complemental strand, 42510295 - 42510114
Alignment:
Q  118 ttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-atagaagag 216  Q
    ||||||||||||||||||||||||| |||| ||||||  ||| ||||||||| ||||||||||||||  || |  |||||||||||||||   ||||||     
T  42510295 ttaataaggtctatggtggactatcaataatgttagtgcaccatagacatttgaggttaaaaactaacggagagaaccaaaatagtaaacggcagaagat 42510196  T
Q  217 ttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaagagactacgggatgtatt 296  Q
    ||||||| |||||||||||||| | ||||||||||||||  |||||||||||||||||| ||||| ||  | ||||||||||    
T  42510195 ttatgggaccaaattgagacactttatagttaagggaccaaactgaaaaaataaaataaattaagggatcaggggatgtatt 42510114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 12934035 - 12933796
Alignment:
Q  14 gaaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataaa 113  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||         ||||||| | |||||||| ||    
T  12934035 gaaaaaattaggtctttgtggtttattataagttacaatagatccctccatgatccaacggtcttcattt-ataaaaaagatcaaaacgttaaaaatgaa 12933937  T
Q  114 agatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-ataga 212  Q
    |||||||||||||| |||||||||  | ||||||||||  || | | |||| |||||||||||||||  ||  |||| |||| |||| ||||||   |||    
T  12933936 agatttaataaggtttatggtggatcacctataaagttgattcatcatagatatttaaggttaaaaataaacggaaaggaccgaaatggtaaacggcaga 12933837  T
Q  213 agagttatggggccaaattgagacacctaatagttaaggga 253  Q
    ||| ||||| |  ||||||||||||| | ||||||| ||||    
T  12933836 agacttatgagatcaaattgagacactttatagttagggga 12933796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 12948196 - 12947957
Alignment:
Q  14 gaaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataaa 113  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||         ||||||| | |||||||| ||    
T  12948196 gaaaaaattaggtctttgtggtttattataagttacaatagatccctccatgatccaacggtcttcattt-ataaaaaagatcaaaacgttaaaaatgaa 12948098  T
Q  114 agatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-ataga 212  Q
    |||||||||||||| |||||||||  | ||||||||||  || | | |||| |||||||||||||||  ||  |||| |||| |||| |||||| | | |    
T  12948097 agatttaataaggtttatggtggatcacctataaagttgattcatcatagatatttaaggttaaaaataaacggaaaggaccgaaatggtaaacgacata 12947998  T
Q  213 agagttatggggccaaattgagacacctaatagttaaggga 253  Q
    ||| ||||| |  ||||||||||||| | ||||||| ||||    
T  12947997 agacttatgagatcaaattgagacactttatagttagggga 12947957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 122 - 283
Target Start/End: Original strand, 12862857 - 12863021
Alignment:
Q  122 taaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaaca-tagaagagttat 220  Q
    ||||||||||||||||| | |||||| ||| ||| |||| ||| ||||| ||||||||| |||  || | |||||||||||||||||  |||||||||||    
T  12862857 taaggtctatggtggaccacctataatgttggttcacctaagatatttagggttaaaaattaacggagaggaccaaaatagtaaacagcagaagagttat 12862956  T
Q  221 ggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaagagac 283  Q
     || |||||||||||||| |||||||||||||| |  ||||| ||||||||||||||||||||||    
T  12862957 aggaccaaattgagacacttaatagttaagggatcaaactgagaaaataaaataagttaagagac 12863021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 122 - 279
Target Start/End: Original strand, 12830877 - 12831037
Alignment:
Q  122 taaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaaca-tagaagagttat 220  Q
    ||||||||||||||||| | |||||| ||| ||| |||| ||| ||||| ||||||||| |||  || | |||||||||||||||||  |||||||||||    
T  12830877 taaggtctatggtggaccacctataatgttggttcacctaagatatttagggttaaaaattaacggagaggaccaaaatagtaaacagcagaagagttat 12830976  T
Q  221 ggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaag 279  Q
     || |||||||||||||| |||||||||||||| |  ||||| ||||||||||||||||||    
T  12830977 aggaccaaattgagacacttaatagttaagggatcaaactgagaaaataaaataagttaag 12831037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 32 - 256
Target Start/End: Original strand, 19525138 - 19525362
Alignment:
Q  32 tggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataaaagatttaataaggtctat 131  Q
    ||||| || |||||||||||| ||||||||||||||||||||||||||||||         ||||||||  |||||||||   |||||||||||||||||    
T  19525138 tggttcatcataagctacaattgatccctccatgatccaacggtctccatttaaaaaaaa-gatcaaacagttaaaaatatgtgatttaataaggtctat 19525236  T
Q  132 ggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-atagaagagttatggggccaaat 230  Q
    ||||||| |  ||||||||| ||| ||| |||| |||||||||||||||| ||  || | ||||||||| ||||||   |||||| ||||| | ||||||    
T  19525237 ggtggaccacatataaagttggttcaccatagaaatttaaggttaaaaacaaacggagaggaccaaaatggtaaacggcagaagacttatgtgaccaaat 19525336  T
Q  231 tgagacacctaatagttaagggacca 256  Q
     ||||||| | ||||||| |||||||    
T  19525337 ggagacactttatagttaggggacca 19525362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 256
Target Start/End: Complemental strand, 38471573 - 38471331
Alignment:
Q  15 aaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaa-ataaa 113  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||  ||| |||||         ||||||||  |||||| | |||    
T  38471573 aaaaaattaggtggttgtggttcattataagctacaatagatccctctatgatccaacaatcttcattt-taaaaaaagatcaaacggttaaaataaaaa 38471475  T
Q  114 agatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-ataga 212  Q
    | |  |||||| ||||||||| ||| | |||||||||| ||| |||||| ||||||||||||||||| ||| ||| |  |||||||||||||||   |||    
T  38471474 ataaataataaagtctatggtagaccacctataaagttggttcaccttaaacatttaaggttaaaaattaacagagagaaccaaaatagtaaacggaaga 38471375  T
Q  213 agagttatggggccaaattgagacacctaatagttaagggacca 256  Q
    ||| ||||||  ||||||||| |||  | | |||||||||||||    
T  38471374 agatttatggaaccaaattgaaacaatttaaagttaagggacca 38471331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 93 - 256
Target Start/End: Complemental strand, 223432 - 223268
Alignment:
Q  93 gatcaaacccttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatg 192  Q
    ||||||||  || ||| ||||| ||||||||| ||||||||| ||| | ||| |||||| ||| |||||||||||||||| |||||||||||| |||| |    
T  223432 gatcaaacggtttaaattaaaaaatttaataaagtctatggtagaccacctacaaagttggttcaccttagacatttaagattaaaaactaatggaaagg 223333  T
Q  193 accaaaatagtaaacata-gaagagttatggggccaaattgagacacctaatagttaagggacca 256  Q
    |||| | ||||||||  | ||||| ||||||| ||||||| | |||| | ||||||| |||||||    
T  223332 accacattagtaaacggaggaagacttatgggaccaaattaatacactttatagttaggggacca 223268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 192 - 279
Target Start/End: Original strand, 22819558 - 22819648
Alignment:
Q  192 gaccaaaatagtaaacat-agaagagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaag 279  Q
    ||||||||||||||||   |||||||||||||| |||||||||||||| |||||||||||||| |  | ||| ||||||||||||||||||    
T  22819558 gaccaaaatagtaaacggcagaagagttatgggaccaaattgagacacttaatagttaagggatcaaattgagaaaataaaataagttaag 22819648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 248
Target Start/End: Complemental strand, 15856729 - 15856584
Alignment:
Q  103 ttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatag 202  Q
    |||||| ||||| | ||| ||||||||||||||||| | |||||| ||| ||  |||||||||||||| |||||||||| ||   ||||||||||||| |    
T  15856729 ttaaaattaaaaaacttagtaaggtctatggtggaccacctataatgttggtccaccttagacatttagggttaaaaacaaacgaaaatgaccaaaatgg 15856630  T
Q  203 taaac-atagaagagttatggggccaaattgagacacctaatagtta 248  Q
    |||||   ||||||||||| ||  |||||||| |||| |||||||||    
T  15856629 taaacggcagaagagttat-ggatcaaattgatacacttaatagtta 15856584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 296
Target Start/End: Original strand, 42511710 - 42511782
Alignment:
Q  226 caaattgagacacctaatagttaagggacca--ctgaaaaaataaaataagttaagagactacgggatgtatt 296  Q
    ||||||||||||| | |||||||||||||||  ||||||||||||||||| ||||| ||||| || |||||||    
T  42511710 caaattgagacactttatagttaagggaccaaactgaaaaaataaaataaattaagggactagggaatgtatt 42511782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 106 - 202
Target Start/End: Complemental strand, 14210336 - 14210240
Alignment:
Q  106 aaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatag 202  Q
    ||||||||| ||||||| ||||||||| ||||| |  ||||| ||||||| |||| ||| ||||| ||||||||||||| ||| | || ||||||||    
T  14210336 aaaataaaaaatttaatgaggtctatgatggaccacttataatgttagttcacctaagatatttagggttaaaaactaacagagaggatcaaaatag 14210240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 279
Target Start/End: Original strand, 15857611 - 15857717
Alignment:
Q  176 aaaaactaatagaaatgaccaaaatagtaaac-atagaagagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaata 272  Q
    |||||||||  || ||||||||||| |||||| | | |||| |||||||  |||||||| |||| | ||||||||||||||  ||||| |||||||||||    
T  15857611 aaaaactaacggagatgaccaaaatggtaaacgacataagatttatgggaacaaattgaaacactttatagttaagggaccaaactgagaaaataaaata 15857710  T
Q  273 agttaag 279  Q
    |||||||    
T  15857711 agttaag 15857717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 238
Target Start/End: Original strand, 5977047 - 5977129
Alignment:
Q  157 accttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaacata-gaagagttatggggccaaattgagacac 238  Q
    |||||||||||||||| ||||||||||| ||||| ||||| | ||||||||  | ||| | ||||||| ||||||||||||||    
T  5977047 accttagacatttaagattaaaaactaacagaaaggaccacattagtaaacggatgaatacttatgggaccaaattgagacac 5977129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 24761685 - 24761627
Alignment:
Q  93 gatcaaacccttaaaaataaaagatttaataaggtctatggtggactatctataaagtt 151  Q
    ||||||||  ||||||||||||||||||||| ||| |||||||||| | ||||||||||    
T  24761685 gatcaaacagttaaaaataaaagatttaatacggtttatggtggaccacctataaagtt 24761627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 22819456 - 22819564
Alignment:
Q  122 taaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-atagaagagttat 220  Q
    |||| ||||| |||||| | |||| | ||| ||| |||||||| || || |||||||||||||  || ||||||||||||||||||   |||||||||||    
T  22819456 taagatctatagtggaccacctatcatgttggttcaccttagatatatagggttaaaaactaacggagatgaccaaaatagtaaacggcagaagagttat 22819555  T
Q  221 ggggccaaa 229  Q
    ||| |||||    
T  22819556 gggaccaaa 22819564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 279
Target Start/End: Original strand, 8188229 - 8188299
Alignment:
Q  211 gaagagttatggggccaaattgagacacctaatagttaagggacca--ctgaaaaaataaaataagttaag 279  Q
    ||||| |||| || ||||||||| |||| |||||||||| ||| ||  |||||||||||||||||||||||    
T  8188229 gaagacttataggaccaaattgacacacttaatagttaaaggatcaaactgaaaaaataaaataagttaag 8188299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 12950264 - 12950334
Alignment:
Q  187 gaaatgaccaaaatagtaaacat-agaagagttatggggccaaattgagacacctaatagttaagggacca 256  Q
    |||||||||||||| |||||||| | |||| |||| || |||||||||||||| | ||||||| |||||||    
T  12950264 gaaatgaccaaaatggtaaacatcataagacttattggaccaaattgagacactttatagttaggggacca 12950334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 256
Target Start/End: Complemental strand, 18693894 - 18693740
Alignment:
Q  103 ttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatag 202  Q
    |||||| ||||| |||||||| ||||||||||| || | || || |  | ||| ||||||||  ||| | |||||||||||| ||| | |||||||| ||    
T  18693894 ttaaaattaaaaaatttaatacggtctatggtgaaccacctttatatatggttcaccttagagttttgatgttaaaaactaacagagaggaccaaaagag 18693795  T
Q  203 taaac-atagaagagttatggggccaaattgagacacctaatagttaagggacca 256  Q
      ||| | |||||| ||||||| ||| |||||||||  | |||||||||||||||    
T  18693794 gtaacgacagaagatttatgggaccagattgagacattttatagttaagggacca 18693740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 296
Target Start/End: Original strand, 24761765 - 24761836
Alignment:
Q  226 caaattgagacacctaatagttaagggac--cactgaaaaaataaaataagttaagagactacgggatgtatt 296  Q
    ||||||||||||| ||||| |||||||||   ||| | |||||||||||||||||| ||||| ||||||||||    
T  24761765 caaattgagacacttaataattaagggactaaactaagaaaataaaataagttaagggacta-gggatgtatt 24761836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 277
Target Start/End: Complemental strand, 30253673 - 30253605
Alignment:
Q  211 gaagagttatggggccaaattgagacacctaatagttaagggaccac--tgaaaaaataaaataagtta 277  Q
    ||||| ||||| | ||||||||| |||| |||||||| |||||||||  ||||||||||||| ||||||    
T  30253673 gaagacttatgagaccaaattgacacacttaatagttgagggaccacactgaaaaaataaaacaagtta 30253605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 296
Target Start/End: Complemental strand, 12829625 - 12829570
Alignment:
Q  243 tagttaagggacca--ctgaaaaaataaaataagttaagagactacgggatgtatt 296  Q
    ||||||||||||||  ||||||||||||||||||||||| ||| |  |||||||||    
T  12829625 tagttaagggaccaaactgaaaaaataaaataagttaagggacgagaggatgtatt 12829570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 238
Target Start/End: Original strand, 38473559 - 38473611
Alignment:
Q  187 gaaatgaccaaaatagtaaac-atagaagagttatggggccaaattgagacac 238  Q
    ||||||||||||||||||||| | |||||| ||||||| ||||||| ||||||    
T  38473559 gaaatgaccaaaatagtaaacgacagaagatttatgggaccaaattaagacac 38473611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 163; Significance: 5e-87; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 50530800 - 50530520
Alignment:
Q  1 gaagaagaaataagaaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||         |||| |||    
T  50530800 gaagaagaaataagaaaaaattaggtgtttgtggtttattataaactacaatagatccctccatgatccaacagtctccatttaaaataaa-gatcgaac 50530702  T
Q  101 ccttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaat 200  Q
    | |||||||||||| ||||||||||||||||||||||||| |||||||||| ||| ||||||||| |||||||||||||| ||| |||||||||||||||    
T  50530701 cgttaaaaataaaaaatttaataaggtctatggtggactacctataaagttggttcaccttagacttttaaggttaaaaattaacagaaatgaccaaaat 50530602  T
Q  201 agtaaac-atagaagagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaag 279  Q
    ||||||| |||||||||||||||| |||  ||||||||| |||||||||| |||||  ||||| ||||||||||||||||||    
T  50530601 agtaaacgatagaagagttatgggaccattttgagacacttaatagttaaaggaccaaactgagaaaataaaataagttaag 50530520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 6140177 - 6140413
Alignment:
Q  1 gaagaagaaataagaaaaaa--ttaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaa 98  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||    
T  6140177 gaagaagaaataagaaaaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttaaaaaaaa-gatcaa 6140275  T
Q  99 acccttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaa 198  Q
    ||  |||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||| |||||||||||||||||||  ||||||||||||    
T  6140276 actgttaaaaataaaagatttaataaggtctatggtggactacctataaagttggttcaccttagatatttaaggttaaaaactaacggaaatgaccaaa 6140375  T
Q  199 atagtaaac-atagaagagttatggggccaaattgaga 235  Q
    ||||||||| | |||||||||||||  |||||||||||    
T  6140376 atagtaaacgacagaagagttatggaaccaaattgaga 6140413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 118 - 282
Target Start/End: Complemental strand, 34438587 - 34438420
Alignment:
Q  118 ttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-atagaagag 216  Q
    |||||||||||||||||||||||||||||| ||||||  ||| ||||||||| |||||||||||||| ||| |  |||||||||||||||   ||||||     
T  34438587 ttaataaggtctatggtggactatctataatgttagtccaccatagacatttgaggttaaaaactaacagagagaaccaaaatagtaaacggcagaagat 34438488  T
Q  217 ttatggggccaaattgagacacctaatagttaagggac--cactgaaaaaataaaataagttaagaga 282  Q
    ||||||| |||||||||||||| | |||||||||||||   ||||| |||||||||||||||||||||    
T  34438487 ttatgggaccaaattgagacactttatagttaagggactaaactgagaaaataaaataagttaagaga 34438420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 52660046 - 52660238
Alignment:
Q  14 gaaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataaa 113  Q
    ||||||||||||||||||||||||||| ||||| |||||||||  |||||||||||||||||||||||||         ||||||||  |||||||| ||    
T  52660046 gaaaaaattaggtgtttgtggtttattgtaagcaacaatagatttctccatgatccaacggtctccattt-aaaacaaagatcaaacagttaaaaatgaa 52660144  T
Q  114 agatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac 207  Q
    ||||||||||| || |||||||||  ||| ||||| ||  || |||| |||||||||||||||||||| || |||||||| |||||| ||||||    
T  52660145 agatttaataaagtttatggtggatcatcaataaaattgattcacctaagacatttaaggttaaaaacaaacagaaatgatcaaaatggtaaac 52660238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 31712339 - 31712530
Alignment:
Q  15 aaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataaaa 114  Q
    |||||||||||||| |||||||||| |||| |||||||||||| ||||||||||||||||||||| |||         ||||||||  || ||||| |||    
T  31712339 aaaaaattaggtgtatgtggtttataataacctacaatagatctctccatgatccaacggtctcc-ttttaaaaaaaagatcaaacggtttaaaatgaaa 31712437  T
Q  115 gatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac 207  Q
    ||||||||||||| || | ||||  | ||||||||||  || |||||||| |||||||||||||||  ||  |||||||||||||| ||||||    
T  31712438 gatttaataaggtttacgatggatcacctataaagttgattcaccttagatatttaaggttaaaaataaacggaaatgaccaaaatggtaaac 31712530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 38 - 256
Target Start/End: Original strand, 11114836 - 11115054
Alignment:
Q  38 attataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataaaagatttaataaggtctatggtgga 137  Q
    |||||||||||||||||| ||||||||||||||||  ||| |||||         |||| |||  |||||| ||||| ||||||||| ||||||||| ||    
T  11114836 attataagctacaataga-ccctccatgatccaacaatcttcatttagaaaaaaagatctaacagttaaaattaaaacatttaataaagtctatggtaga 11114934  T
Q  138 ctatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-atagaagagttatggggccaaattgagac 236  Q
    | | ||| |||||| ||| | ||||||||||||||||||||||||||  || | | ||||||| |||||| | |||||||||||||| |||||||||||     
T  11114935 ccacctacaaagttggttcagcttagacatttaaggttaaaaactaacggagaggtccaaaatggtaaacgacagaagagttatgggaccaaattgagat 11115034  T
Q  237 acctaatagttaagggacca 256  Q
    || | ||||||| |||||||    
T  11115035 actttatagttaggggacca 11115054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 28102365 - 28102168
Alignment:
Q  1 gaagaagaaataagaaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaac 100  Q
    |||||||||  | ||||||||||||||| |||||||||| |||| |||||||||||| ||||||||||||||||||||| |||          |  |||     
T  28102365 gaagaagaaggaggaaaaaattaggtgtgtgtggtttataataacctacaatagatctctccatgatccaacggtctcctttta---------aaaaaaa 28102275  T
Q  101 ccttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaat 200  Q
      |||||||| ||| |||||||||||| || ||||||  | ||||||||||  || ||||||||||||||||||||||||  ||  ||||||||||||||    
T  28102274 agttaaaaatgaaatatttaataaggtttacggtggatcacctataaagttgattcaccttagacatttaaggttaaaaataaacggaaatgaccaaaat 28102175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 15 - 283
Target Start/End: Complemental strand, 17319327 - 17319055
Alignment:
Q  15 aaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnn-gatcaaacccttaaaaataaa 113  Q
    ||||||||||||| |||| ||| ||||||||||| |||||| ||||||||||||||||  ||| |||||          |||| |||  |||||| ||||    
T  17319327 aaaaaattaggtgattgtagttcattataagctagaatagacccctccatgatccaacaatcttcattttaaaaaaaaagatccaacggttaaaattaaa 17319228  T
Q  114 agatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-ataga 212  Q
    | ||||||||| || |||| | ||| | |||  ||||| ||| ||||||||||||||||||||||||||||  |  | ||||||||||||||||   |||    
T  17319227 aaatttaataaagtttatgatagaccacctaagaagttggttcaccttagacatttaaggttaaaaactaacggtgaagaccaaaatagtaaacgccaga 17319128  T
Q  213 agagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaagagac 283  Q
    ||| ||||||  ||||||||| |||| | ||||||||| || |  ||||| ||| ||||||||||||||||||    
T  17319127 agatttatggaaccaaattgaaacactttatagttaagagatcaaactgagaaattaaaataagttaagagac 17319055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 103 - 249
Target Start/End: Original strand, 26393047 - 26393194
Alignment:
Q  103 ttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatag 202  Q
    |||||| ||||| | ||| ||||||||||||||||| | |||||| ||| ||| ||||||||||||||  |||||||||  |  ||| || ||||||| |    
T  26393047 ttaaaattaaaaaacttagtaaggtctatggtggaccacctataatgttggttcaccttagacatttagtgttaaaaacagacggaagtgtccaaaatgg 26393146  T
Q  203 taaac-atagaagagttatggggccaaattgagacacctaatagttaa 249  Q
    ||||| | |||||||||||||| |||||||||||||| | ||||||||    
T  26393147 taaacgacagaagagttatgggaccaaattgagacactttatagttaa 26393194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 103 - 248
Target Start/End: Original strand, 3533528 - 3533674
Alignment:
Q  103 ttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatag 202  Q
    |||||| ||||| | ||| |||||||||||||||||   |||||| ||| ||  ||||||||||||||  |||||||||| |  |||| ||||||||| |    
T  3533528 ttaaaattaaaaaacttagtaaggtctatggtggaccgcctataatgttggtcgaccttagacatttagtgttaaaaactgacggaaaggaccaaaatgg 3533627  T
Q  203 taaaca-tagaagagttatggggccaaattgagacacctaatagtta 248  Q
    |||||| |||||||||||| || |||||||||||||| | |||||||    
T  3533628 taaacagtagaagagttatcggaccaaattgagacactttatagtta 3533674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 145 - 279
Target Start/End: Original strand, 41349487 - 41349624
Alignment:
Q  145 taaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaacata-gaagagttatggggccaaattgagacacctaat 243  Q
    ||||||||||| |||||||||||||||| ||||||||||| ||||| ||||| | |||||||   | ||||| |||||||  |||||||| |||| |||     
T  41349487 taaagttagttcaccttagacatttaagattaaaaactaacagaaaggaccacattagtaaatggaggaagatttatgggatcaaattgacacacttaaa 41349586  T
Q  244 agttaagggacc--actgaaaaaataaaataagttaag 279  Q
    |||||||||| |  ||||| ||||||||||||||||||    
T  41349587 agttaagggatcaaactgagaaaataaaataagttaag 41349624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 122 - 279
Target Start/End: Original strand, 43419314 - 43419474
Alignment:
Q  122 taaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaat-gaccaaaatagtaaacat-agaagagtta 219  Q
    |||| |||||||||||| | |||||| ||| ||| |||||| ||||||| |||||||||||||  ||||| |||||||||||  |||   ||||||||||    
T  43419314 taagatctatggtggaccacctataatgttggttcaccttatacatttatggttaaaaactaac-gaaatagaccaaaataggtaacggcagaagagtta 43419412  T
Q  220 tggggccaaattgagacacctaatagttaagggac--cactgaaaaaataaaataagttaag 279  Q
     ||| |||||||||||||| | |||||||||||||   ||||| ||||||||||||||||||    
T  43419413 agggaccaaattgagacactttatagttaagggacgaaactgagaaaataaaataagttaag 43419474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 180 - 296
Target Start/End: Original strand, 50531753 - 50531872
Alignment:
Q  180 actaatagaaatgaccaaaatagtaaac-atagaagagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagtt 276  Q
    ||||| ||||||||| |||||||||||| | | |||||||||||| |||||||||||||| |||||||||||||| |  | ||| |||||||||||||||    
T  50531753 actaacagaaatgactaaaatagtaaacgacaaaagagttatgggaccaaattgagacacttaatagttaagggatcaaattgagaaaataaaataagtt 50531852  T
Q  277 aagagactacgggatgtatt 296  Q
    ||| |||   ||||||||||    
T  50531853 aagggacagtgggatgtatt 50531872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 103 - 238
Target Start/End: Complemental strand, 38370479 - 38370342
Alignment:
Q  103 ttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacattt-aaggttaaaaactaatagaaatgaccaaaata 201  Q
    |||||| |||| || || ||||| |||||||||||| | ||| |||||| ||| ||||||| ||||| |||||||||||||||  || |||||||||||     
T  38370479 ttaaaattaaatgaatttataagatctatggtggaccacctacaaagttggttcaccttagtcattttaaggttaaaaactaacggagatgaccaaaatg 38370380  T
Q  202 gtaaac-atagaagagttatggggccaaattgagacac 238  Q
    |||||| | |||||||||||| | ||||||||| ||||    
T  38370379 gtaaacgacagaagagttatgagaccaaattgatacac 38370342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 278
Target Start/End: Complemental strand, 44159262 - 44159103
Alignment:
Q  122 taaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-atagaagagttat 220  Q
    |||| |||||||||||| | ||||||  ||  || |||||||| ||||| | |||||||||||  || |||||||||||| |||||   ||||||||| |    
T  44159262 taagatctatggtggaccacctataatattgtttcaccttagatatttaggattaaaaactaacggagatgaccaaaataataaacggcagaagagttgt 44159163  T
Q  221 ggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaa 278  Q
    ||  ||||||||| |||| ||||||||||| || |  |||||||||||||||||||||||    
T  44159162 ggaaccaaattgaaacacttaatagttaagagatcaaactgaaaaaataaaataagttaa 44159103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 48207556 - 48207773
Alignment:
Q  19 aattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataaaagatt 118  Q
    ||||||||| |||| ||| ||||||||||||||||||||||||| |||||||||  ||| |||||         ||||||||  |||||| ||||| |||    
T  48207556 aattaggtggttgttgttcattataagctacaatagatccctccgtgatccaacaatcttcattt-ttaaaaaagatcaaacggttaaaattaaaaaatt 48207654  T
Q  119 taataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-atagaagagt 217  Q
    ||||||  |||||||| || |   ||| ||||| ||| |||||||||||||||||||||||| ||| |||   ||||| ||| ||||||  |||||||||    
T  48207655 taataaaatctatggtaga-tccttat-aagttggttcaccttagacatttaaggttaaaaaataacagaggggaccacaattgtaaacggtagaagagt 48207752  T
Q  218 tatggggccaaattgagacac 238  Q
    |||  | ||||||||||||||    
T  48207753 tatatgaccaaattgagacac 48207773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 177 - 296
Target Start/End: Original strand, 34439654 - 34439776
Alignment:
Q  177 aaaactaatagaaatgaccaaaatagtaaacat-agaagagttatggggccaaattgagacacctaatagttaagggaccac--tgaaaaaataaaataa 273  Q
    ||||||||  || ||||||||||||||||||   |||||| ||||||| ||||||||| |||  | ||||||||||||||||  ||| ||||||||||||    
T  34439654 aaaactaacggagatgaccaaaatagtaaacggcagaagatttatgggaccaaattgaaacattttatagttaagggaccacactgagaaaataaaataa 34439753  T
Q  274 gttaagagactacgggatgtatt 296  Q
    |||||| ||||  ||||||||||    
T  34439754 gttaagggactgagggatgtatt 34439776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 93 - 196
Target Start/End: Original strand, 38555186 - 38555289
Alignment:
Q  93 gatcaaacccttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatg 192  Q
    ||||||||  || ||| ||||| ||||||||| ||||||||| ||| | ||| |||||| ||| |||||||||||||||| |||||||||||  ||||||    
T  38555186 gatcaaacggtttaaattaaaaaatttaataaagtctatggtagaccacctacaaagttggttcaccttagacatttaagattaaaaactaacggaaatg 38555285  T
Q  193 acca 196  Q
    ||||    
T  38555286 acca 38555289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 103 - 253
Target Start/End: Complemental strand, 56000483 - 56000332
Alignment:
Q  103 ttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatag 202  Q
    |||||| ||||| | ||| ||||||||| ||||||| | |||||| ||| ||  ||||||||||||||  |||||||||| || |||| ||||||||| |    
T  56000483 ttaaaattaaaaaacttagtaaggtctacggtggaccacctataatgttggtccaccttagacatttagtgttaaaaactgatggaaaagaccaaaatgg 56000384  T
Q  203 taaac-atagaagagttatggggccaaattgagacacctaatagttaaggga 253  Q
    |||||   ||||||||||| || | |||||||||||| | ||||||| ||||    
T  56000383 taaacggcagaagagttataggactaaattgagacactttatagttagggga 56000332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 180
Target Start/End: Complemental strand, 40144821 - 40144655
Alignment:
Q  16 aaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccattt--nnnnnnnnngatcaaacccttaaaaataaa 113  Q
    |||||||| ||| ||||||||||||||||||||||||||||| ||| || |||||||  ||| |||||            |||||||  |||||| || |    
T  40144821 aaaaattaagtggttgtggtttattataagctacaatagatctctctataatccaacaatcttcatttaaaaagaaaaaaatcaaacggttaaaattaca 40144722  T
Q  114 agatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaa 180  Q
    |  |||||||| ||| || || |||||||||||||||| ||| |||||| |||||||||||||||||    
T  40144721 aattttaataaagtccatagtagactatctataaagttggttcaccttaaacatttaaggttaaaaa 40144655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 6139116 - 6139014
Alignment:
Q  180 actaatagaaatgaccaaaatagtaaacat-agaagagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagtt 276  Q
    ||||| ||| |||||||||||| ||||||  | |||||||||| | |||||||||||||  ||||| ||||||||||  ||||| |||||||||||||||    
T  6139116 actaacagagatgaccaaaataataaacaacataagagttatgagaccaaattgagacatttaataattaagggaccaaactgagaaaataaaataagtt 6139017  T
Q  277 aag 279  Q
    |||    
T  6139016 aag 6139014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 278
Target Start/End: Complemental strand, 38417660 - 38417571
Alignment:
Q  192 gaccaaaatagtaaac-atagaagagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaa 278  Q
    |||| ||||||||||| | | |||| ||||||| ||||||||| |||| ||||||||||||||||  ||||| |||||||||||||||||    
T  38417660 gaccgaaatagtaaacgacataagatttatgggaccaaattgacacacttaatagttaagggaccaaactgagaaaataaaataagttaa 38417571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 11113866 - 11113786
Alignment:
Q  175 taaaaactaatagaaatgaccaaaatagtaaacat-agaagagttatggggccaaattgagacacctaatagttaagggac 254  Q
    ||||||||||  |||||||||||||| ||||||   |||||||||||| | |||||||||||||| | |||||||||||||    
T  11113866 taaaaactaacggaaatgaccaaaatggtaaacggcagaagagttatgagaccaaattgagacactttatagttaagggac 11113786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 122 - 237
Target Start/End: Complemental strand, 29663819 - 29663703
Alignment:
Q  122 taaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-atagaagagttat 220  Q
    |||||| |||||||||| | |||||| ||| ||| ||||||||||||||| |||||||   ||  |||| || |||||| ||||||   |||||||||||    
T  29663819 taaggtttatggtggaccacctataatgttggttcaccttagacatttaatgttaaaattaaacggaaaagatcaaaatggtaaacggcagaagagttat 29663720  T
Q  221 ggggccaaattgagaca 237  Q
    ||| |||||||||||||    
T  29663719 gggaccaaattgagaca 29663703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 233
Target Start/End: Complemental strand, 35787992 - 35787861
Alignment:
Q  103 ttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatag 202  Q
    |||||| | ||| ||||||||| ||||||||||||| | || ||||  |  |||||||||||||||| | ||||||||||||  || | ||||||||  |    
T  35787992 ttaaaatttaaaaatttaataaagtctatggtggaccacctttaaacatgatttaccttagacatttgatgttaaaaactaacggagaggaccaaaacgg 35787893  T
Q  203 taaac-atagaagagttatggggccaaattga 233  Q
    ||||| | |||||| ||||||| |||||||||    
T  35787892 taaacgacagaagatttatgggaccaaattga 35787861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 237
Target Start/End: Complemental strand, 56296389 - 56296254
Alignment:
Q  103 ttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatag 202  Q
    |||||| ||||| | ||| ||||||||||||| ||| | |||| | ||| ||  |||||||||||||| |||||||||| ||  ||||| |||||||| |    
T  56296389 ttaaaattaaaaaacttagtaaggtctatggtagaccacctatgatgttggtccaccttagacatttagggttaaaaacaaacggaaattaccaaaatgg 56296290  T
Q  203 taaac-atagaagagttatggggccaaattgagaca 237  Q
    ||||| | | |||| ||||||| ||||||| |||||    
T  56296289 taaacgacaaaagaattatgggaccaaattaagaca 56296254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 207
Target Start/End: Complemental strand, 17494308 - 17494219
Alignment:
Q  118 ttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac 207  Q
    |||||||||||||||||||||||  | ||| |||  || || ||||||||||||||||||||| |||  || || ||||| |||||||||    
T  17494308 ttaataaggtctatggtggactacttttaacgttgtttcacgttagacatttaaggttaaaaagtaacggagataaccaatatagtaaac 17494219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 178
Target Start/End: Original strand, 13533193 - 13533253
Alignment:
Q  118 ttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaa 178  Q
    |||||||||||||||||||||||||||||| ||| ||  ||| ||||||||| | ||||||    
T  13533193 ttaataaggtctatggtggactatctataatgttggtccaccatagacatttgaagttaaa 13533253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 296
Target Start/End: Complemental strand, 41348326 - 41348239
Alignment:
Q  211 gaagagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaagagactacgggatgtatt 296  Q
    ||||| |||||||  |||||||| |||| |||||||||||||| |  ||||| |||||||||||||||||  ||| | ||||||||||    
T  41348326 gaagacttatgggatcaaattgacacacttaatagttaagggatcaaactgagaaaataaaataagttaaaggaccaggggatgtatt 41348239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 256
Target Start/End: Complemental strand, 5687284 - 5687217
Alignment:
Q  190 atgaccaaaatagtaaacat-agaagagttatggggccaaattgagacacctaatagttaagggacca 256  Q
    ||||||||||||||||||   | |||| ||||||| |||||||||||||| | |||||||||||||||    
T  5687284 atgaccaaaatagtaaacggcaaaagatttatgggaccaaattgagacactttatagttaagggacca 5687217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 199
Target Start/End: Original strand, 47668530 - 47668613
Alignment:
Q  116 atttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaa 199  Q
    |||||| |||||||||||||||| |||| |||   | |||||||||||| |||| | |||||||||||| ||| | ||||||||    
T  47668530 atttaaaaaggtctatggtggaccatctttaaccatggtttaccttagatatttgatgttaaaaactaacagagaggaccaaaa 47668613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 256
Target Start/End: Original strand, 6616131 - 6616285
Alignment:
Q  103 ttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatag 202  Q
    |||||| | ||| |||||||||||||||| ||||||||||| |||   | ||| ||||| ||||||| | ||||||||||||  || | |||||||| |     
T  6616131 ttaaaatttaaaaatttaataaggtctatagtggactatctttaatcattgttcacctttgacatttgatgttaaaaactaaaggagaggaccaaaacaa 6616230  T
Q  203 taaac-atagaagagttatggggccaaattgagacacctaatagttaagggacca 256  Q
    ||||| | |||| |  || ||| |||| ||||||||| | ||||||| |||||||    
T  6616231 taaacgacagaatatataagggaccaatttgagacactttatagttaggggacca 6616285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 296
Target Start/End: Complemental strand, 43418110 - 43418033
Alignment:
Q  221 ggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaagagactacgggatgtatt 296  Q
    ||||||||||||| |||| | ||||||||||||||  ||||| |||||||||||| ||||  ||||  ||||||||||    
T  43418110 ggggccaaattgaaacactttatagttaagggaccaaactgagaaaataaaataatttaaaggactgggggatgtatt 43418033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 296
Target Start/End: Complemental strand, 5417376 - 5417304
Alignment:
Q  226 caaattgagacacctaatagttaagggacca--ctgaaaaaataaaataagttaagagactacgggatgtatt 296  Q
    |||||||| |||  |||||||||||||||||  |||||||| |||||||||||||| ||| | | ||||||||    
T  5417376 caaattgaaacatttaatagttaagggaccaaactgaaaaattaaaataagttaagggaccaagagatgtatt 5417304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 147
Target Start/End: Original strand, 5591380 - 5591409
Alignment:
Q  118 ttaataaggtctatggtggactatctataa 147  Q
    ||||||||||||||||||||||||||||||    
T  5591380 ttaataaggtctatggtggactatctataa 5591409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 147
Target Start/End: Complemental strand, 27847861 - 27847832
Alignment:
Q  118 ttaataaggtctatggtggactatctataa 147  Q
    ||||||||||||||||||||||||||||||    
T  27847861 ttaataaggtctatggtggactatctataa 27847832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 256
Target Start/End: Original strand, 30683056 - 30683101
Alignment:
Q  211 gaagagttatggggccaaattgagacacctaatagttaagggacca 256  Q
    ||||| ||||||| |||||||||||||| | |||||||||||||||    
T  30683056 gaagatttatgggaccaaattgagacactttatagttaagggacca 30683101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 256
Target Start/End: Original strand, 33377373 - 33377438
Alignment:
Q  192 gaccaaaatagtaaacat-agaagagttatggggccaaattgagacacctaatagttaagggacca 256  Q
    ||||||||||||||||   |||||| ||||||| |||||||||||||| | ||||||| |||||||    
T  33377373 gaccaaaatagtaaacggcagaagatttatgggaccaaattgagacactttatagttaggggacca 33377438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 184
Target Start/End: Complemental strand, 44302916 - 44302835
Alignment:
Q  103 ttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaa 184  Q
    |||||| ||||| |||||||| ||||||||||| || | || ||||  ||||| ||||||| | ||||| ||||||||||||    
T  44302916 ttaaaattaaaaaatttaatacggtctatggtgaaccacctttaaatatagttcaccttagtcttttaatgttaaaaactaa 44302835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 147
Target Start/End: Complemental strand, 48126990 - 48126961
Alignment:
Q  118 ttaataaggtctatggtggactatctataa 147  Q
    ||||||||||||||||||||||||||||||    
T  48126990 ttaataaggtctatggtggactatctataa 48126961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 2 - 278
Target Start/End: Complemental strand, 10256419 - 10256141
Alignment:
Q  2 aagaagaaataagaaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacc 101  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||         |||| ||||    
T  10256419 aagaagaaataagaaaaaattaggtgtttgtggtttattataaactataatagatccctccatgatccaacagtctccatttaaaataaa-gatcgaacc 10256321  T
Q  102 cttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaata 201  Q
     |||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||| |||||||||||||| || |||||||||||||||||    
T  10256320 gttaaaaataaaagatttaataaggtctatggtggactacctataaagttggttcaccttagacttttaaggttaaaaattactagaaatgaccaaaata 10256221  T
Q  202 gtaaac-atagaagagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaa 278  Q
     ||||| |||||||||||||| | |||  ||||||||| ||||||||||||||||  ||||| |||||||||||||||||    
T  10256220 ctaaacgatagaagagttatgagaccattttgagacacttaatagttaagggaccaaactgagaaaataaaataagttaa 10256141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 14 - 256
Target Start/End: Original strand, 46458543 - 46458787
Alignment:
Q  14 gaaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnn-gatcaaacccttaaaaataa 112  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| || |||||||||||| ||  |||||          ||||||||  |||||| ||     
T  46458543 gaaaaaattaggtgtttgtggttcattataaggtacaatagatctcttcatgatccaacgatccacatttaacaaaaaaagatcaaacggttaaaactat 46458642  T
Q  113 aagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-atag 211  Q
      |||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||| ||  || | ||||||||| ||||||   ||    
T  46458643 gtgatttaataaggtctatggtggactacctataaagttggttcaccttagacatttaaggttaaaaacaaacggagaggaccaaaatggtaaacggaag 46458742  T
Q  212 aagagttatggggccaaattgagacacctaatagttaagggacca 256  Q
    |||| ||||||| |||||||||||||| | |||||||||||||||    
T  46458743 aagatttatgggaccaaattgagacactttatagttaagggacca 46458787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 15 - 279
Target Start/End: Original strand, 131832 - 132098
Alignment:
Q  15 aaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataaaa 114  Q
    ||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||  ||| |||||         ||||||||  |||||| |||||    
T  131832 aaaaaattaggtggttgtggttcattataagctacaatagatctctccatgatccaacaatcttcatttaaagaaaa-gatcaaacggttaaaattaaaa 131930  T
Q  115 gatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaacata-gaa 213  Q
     ||||||||| || |||||| | | |  || |||||| ||| ||||||||||||||||||||||||||||  || |||| || | ||||||||  | |||    
T  131931 aatttaataaagtttatggtagtccacttacaaagttggttcaccttagacatttaaggttaaaaactaacggagatgatcacattagtaaacggaggaa 132030  T
Q  214 gagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaag 279  Q
    || ||||||| |||||| || |||| ||||||||||||||||  ||||| ||||||||||||||||||    
T  132031 gacttatgggaccaaatcgacacacttaatagttaagggaccaaactgagaaaataaaataagttaag 132098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 15 - 253
Target Start/End: Original strand, 25154767 - 25155007
Alignment:
Q  15 aaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnn--gatcaaacccttaaaaataa 112  Q
    |||||||||||||| || |||| ||||||||||||| ||||||||| | |||||||||||||| |||||           ||||||||  ||||||||||    
T  25154767 aaaaaattaggtgtgtggggttcattataagctacagtagatcccttc-tgatccaacggtcttcattttaaaaaaaaacgatcaaacggttaaaaataa 25154865  T
Q  113 aagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaaca-tag 211  Q
    ||||||||||||| | |||||||||| |  ||||||||| ||| ||||||||||||||||||||||||| ||  || |||||||||||  ||||||  ||    
T  25154866 aagatttaataagttttatggtggaccacttataaagttggttcaccttagacatttaaggttaaaaacaaacggagatgaccaaaatgataaacagaag 25154965  T
Q  212 aagagttatggggccaaattgagacacctaatagttaaggga 253  Q
    |||| ||||| |   |||||||||||| | ||||||||||||    
T  25154966 aagatttatgagattaaattgagacactttatagttaaggga 25155007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 207
Target Start/End: Complemental strand, 24872274 - 24872082
Alignment:
Q  14 gaaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataaa 113  Q
    |||||| ||||||||||||||||||||||||| ||  ||||||||||||||||| |||||||||||||||         |||||||   |||||||| ||    
T  24872274 gaaaaatttaggtgtttgtggtttattataagttatgatagatccctccatgattcaacggtctccattt-ataaaaaagatcaaaaggttaaaaatgaa 24872176  T
Q  114 agatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac 207  Q
    ||| ||||| |||| |||||||||  ||||||||||||  || ||| ||||||||||||||||||||| ||  |||| || |||||| ||||||    
T  24872175 agacttaatgaggtttatggtggatcatctataaagttgattcaccatagacatttaaggttaaaaacaaacggaaaggatcaaaatggtaaac 24872082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 248
Target Start/End: Original strand, 33459377 - 33459609
Alignment:
Q  16 aaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataaaag 115  Q
    |||||||||||| ||||||||||||||||| || |||||||| ||| ||||||||||  |||  ||||          |||||||  |||||| || ||     
T  33459377 aaaaattaggtggttgtggtttattataagttaaaatagatctctctatgatccaacaatcttaatttaaaaaaaat-atcaaacggttaaaattacaaa 33459475  T
Q  116 atttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaacata-gaag 214  Q
     |||||||| ||| ||||| ||| | ||| |||||| ||| |||||||||| ||||||||||||||||| ||||| ||||| | ||||||||  | ||||    
T  33459476 ttttaataaagtccatggtagaccacctacaaagttggttcaccttagacagttaaggttaaaaactaacagaaaagaccacattagtaaacggaggaag 33459575  T
Q  215 agttatggggccaaattgagacacctaatagtta 248  Q
    | ||||||| |||||||||||||| | |||||||    
T  33459576 acttatgggaccaaattgagacactttatagtta 33459609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 111 - 284
Target Start/End: Original strand, 27899142 - 27899318
Alignment:
Q  111 aaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-at 209  Q
    |||||||| |||||| ||||||||||    ||||||||||| ||| |||||||| |||||||||||||||||||  || | |||||||||||||||| |     
T  27899142 aaaagattcaataagatctatggtgggtcgtctataaagttggttcaccttagatatttaaggttaaaaactaacggataagaccaaaatagtaaacgac 27899241  T
Q  210 agaagagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaagagact 284  Q
    | |||| |||||||  |||||||||| |  | |||||||| |||||  ||| | |||||||||||||||||| ||||    
T  27899242 aaaagatttatgggatcaaattgagatattttatagttaaaggaccaaactaagaaaataaaataagttaagggact 27899318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 296
Target Start/End: Original strand, 10257385 - 10257502
Alignment:
Q  180 actaatagaaatgaccaaaatagtaaacatagaagagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagtta 277  Q
    ||||| ||||||||| ||||||||||||  | |||||||||||| |||||||||||||| |||||||||||||| |  | ||| ||||||||||||||||    
T  10257385 actaacagaaatgactaaaatagtaaacg-acaagagttatgggaccaaattgagacacttaatagttaagggatcaaattgagaaaataaaataagtta 10257483  T
Q  278 agagactacgggatgtatt 296  Q
    || |||   ||||||||||    
T  10257484 agggacagtgggatgtatt 10257502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 256
Target Start/End: Complemental strand, 43930461 - 43930361
Alignment:
Q  157 accttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-atagaagagttatggggccaaattgagacacctaatagttaagggacc 255  Q
    |||||||||||||||||||||||| ||| ||| | |||||||||||||||| | |||||| |||| || ||||||||||||   ||||||||| ||||||    
T  43930461 accttagacatttaaggttaaaaattaacagagaggaccaaaatagtaaacgacagaagatttataggaccaaattgagacgtttaatagttaggggacc 43930362  T
Q  256 a 256  Q
    |    
T  43930361 a 43930361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 116 - 279
Target Start/End: Complemental strand, 4167634 - 4167468
Alignment:
Q  116 atttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-atagaag 214  Q
    |||||||||| |||||||||||| | || ||||  | ||| |||||||| |||| | |||||||| | | ||||||||| |||| ||||||| | |||||    
T  4167634 atttaataagatctatggtggaccacctttaaacatggttcaccttagaaatttgatgttaaaaattgacagaaatgactaaaacagtaaacgacagaag 4167535  T
Q  215 agttatggggccaaattgagacacctaatagttaaggga--ccactgaaaaaataaaataagttaag 279  Q
    | |||| ||  |||||||| |||| ||||||||||||||    ||||| ||||||||||||||||||    
T  4167534 acttataggatcaaattgacacacttaatagttaagggattaaactgagaaaataaaataagttaag 4167468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 116 - 283
Target Start/End: Original strand, 41516277 - 41516447
Alignment:
Q  116 atttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-atagaag 214  Q
    ||||||||| |||||||||  |  | ||| |||||||||  |||||||||||||||| ||||||||||| ||||||||||| | || |||||   ||||     
T  41516277 atttaataaagtctatggtataacacctacaaagttagtccaccttagacatttaagattaaaaactaacagaaatgaccacattactaaacggaagaat 41516376  T
Q  215 agttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaagagac 283  Q
    | ||||||| ||||||| |||||| | ||||||| ||||||  | | |||| | |||||||||||||||||    
T  41516377 acttatgggaccaaattaagacactttatagttaggggaccaaaattaaaacaaaaaataagttaagagac 41516447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 238
Target Start/End: Complemental strand, 26406297 - 26406185
Alignment:
Q  127 tctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-atagaagagttatggggc 225  Q
    |||||||||||| | ||| |||||| ||| |||||||||||||||||||||||| |||  || |||||||||||  |||||   |||||||||||| |      
T  26406297 tctatggtggaccacctacaaagttggttcaccttagacatttaaggttaaaaaataacggagatgaccaaaatgttaaacggcagaagagttatgagat 26406198  T
Q  226 caaattgagacac 238  Q
    |||||||||||||    
T  26406197 caaattgagacac 26406185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 279
Target Start/End: Original strand, 35315199 - 35315321
Alignment:
Q  160 ttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-atagaagagttatggggccaaattgagacacctaatagttaagggacc--a 256  Q
    |||||||||| | |||||||||||| ||| | ||| |||| ||||||| | |||||| ||||||| ||||||||| | || ||||| |||||||| |  |    
T  35315199 ttagacatttgatgttaaaaactaacagagaggactaaaacagtaaacgacagaagacttatgggaccaaattgacatacttaataattaagggatcaaa 35315298  T
Q  257 ctgaaaaaataaaataagttaag 279  Q
    |||| ||||||||||||||||||    
T  35315299 ctgagaaaataaaataagttaag 35315321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 279
Target Start/End: Original strand, 35484249 - 35484409
Alignment:
Q  122 taaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaat-gaccaaaata-gtaaacatagaagagtta 219  Q
    |||| |||||||||||| | |||||| ||| ||| |||||||||||||| |||||||||||||  ||| | |||||||||| ||||    ||||||||||    
T  35484249 taagatctatggtggaccacctataatgttggttcaccttagacatttagggttaaaaactaa-cgaagtggaccaaaataggtaatggcagaagagtta 35484347  T
Q  220 tggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaag 279  Q
    |||| | ||||||| | || | |||||||| |||||  |||||  |||||||||||||||||    
T  35484348 tgggactaaattgaaatactttatagttaaaggaccaaactgaggaaataaaataagttaag 35484409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 256
Target Start/End: Complemental strand, 38406200 - 38406060
Alignment:
Q  116 atttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaacat-agaag 214  Q
    ||||||||||||||||| ||||||| || ||||  | ||| ||||||||||||| | |||||||| |||  |||| |||||||| ||||||| | |||||    
T  38406200 atttaataaggtctatg-tggactacctttaaatatggttcaccttagacatttgatgttaaaaattaacggaaaggaccaaaacagtaaacgtcagaag 38406102  T
Q  215 agttatggggccaaattgagacacctaatagttaagggacca 256  Q
    | ||||||  |||  ||||||||| | ||||||| |||||||    
T  38406101 atttatggaaccagtttgagacactttatagttaggggacca 38406060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 117 - 256
Target Start/End: Complemental strand, 28325254 - 28325114
Alignment:
Q  117 tttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaacata-gaaga 215  Q
    |||||||| ||||||||| ||| | ||| |||||| ||  |||||||||||||||| ||||||||||| | ||| ||||| | || |||||| | ||| |    
T  28325254 tttaataaagtctatggtagaccacctacaaagttggtccaccttagacatttaagattaaaaactaacaaaaaggaccacattaataaacaaatgaata 28325155  T
Q  216 gttatggggccaaattgagacacctaatagttaagggacca 256  Q
     ||||||| ||||||||||| || | | ||||| |||||||    
T  28325154 cttatgggaccaaattgagatactttaaagttaggggacca 28325114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 253
Target Start/End: Original strand, 13286970 - 13287065
Alignment:
Q  159 cttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaaca-tagaagagttatggggccaaattgagacacctaatagttaaggga 253  Q
    ||||||||||||||||||||||||||   | | |||||||||||||||||  | ||||  || ||| ||||||||| |||| ||||||||||||||    
T  13286970 cttagacatttaaggttaaaaactaacgaagaggaccaaaatagtaaacagcataagacataagggaccaaattgaaacacttaatagttaaggga 13287065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 178
Target Start/End: Original strand, 9662169 - 9662229
Alignment:
Q  118 ttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaa 178  Q
    |||||||||||||||||||||||||||||| ||| ||  ||| ||||||||| | ||||||    
T  9662169 ttaataaggtctatggtggactatctataatgttggtccaccatagacatttgaagttaaa 9662229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 256
Target Start/End: Complemental strand, 40930560 - 40930460
Alignment:
Q  157 accttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaacat-agaagagttatggggccaaattgagacacctaatagttaagggacc 255  Q
    |||||||| |||| | |||||||||||||||| | ||| ||||  |||||||| | |||| ||||||| ||||||||| |||| | ||||||| ||||||    
T  40930560 accttagatatttgatgttaaaaactaatagagaggactaaaacggtaaacatcaaaagatttatgggaccaaattgaaacactttatagttaggggacc 40930461  T
Q  256 a 256  Q
    |    
T  40930460 a 40930460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 184
Target Start/End: Original strand, 14109005 - 14109072
Alignment:
Q  117 tttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaa 184  Q
    |||||||||||||||||||||| | || ||||  | ||| ||||||||||||| | ||||||||||||    
T  14109005 tttaataaggtctatggtggaccacctttaaacatggttcaccttagacatttgatgttaaaaactaa 14109072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 184
Target Start/End: Original strand, 14418962 - 14419029
Alignment:
Q  117 tttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaa 184  Q
    |||||||||||||||||||||| | || ||||  | ||| ||||||||||||| | ||||||||||||    
T  14418962 tttaataaggtctatggtggaccacctttaaacatggttcaccttagacatttgatgttaaaaactaa 14419029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 253
Target Start/End: Complemental strand, 45719811 - 45719660
Alignment:
Q  103 ttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatag 202  Q
    |||||| ||||| | ||| |||||| |||||||||  | |||||| ||| ||  ||||||||||||||  |||||||||| |   |||  |||||||| |    
T  45719811 ttaaaattaaaaaacttagtaaggtttatggtggagcacctataatgttggtccaccttagacatttagtgttaaaaactgacgaaaaaaaccaaaatgg 45719712  T
Q  203 taaac-atagaagagttatggggccaaattgagacacctaatagttaaggga 253  Q
    ||||| | |||||||||||| | ||||||| |||||| | ||||||| ||||    
T  45719711 taaacaacagaagagttatgagaccaaatttagacactttatagttagggga 45719660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 256
Target Start/End: Complemental strand, 19278460 - 19278395
Alignment:
Q  192 gaccaaaatagtaaacat-agaagagttatggggccaaattgagacacctaatagttaagggacca 256  Q
    ||||||||||||||||   |||||| ||||||| |||||||||||||| | ||| |||||||||||    
T  19278460 gaccaaaatagtaaacggcagaagaattatgggaccaaattgagacactttataattaagggacca 19278395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 35174202 - 35174481
Alignment:
Q  1 gaagaagaaataagaaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||         ||||||||    
T  35174202 gaagaagaaataagaaaaaattaggtgtttgtggtttattataaactacaatagatccctccatgatccaagggtctccatttaaaacaaa-gatcaaac 35174300  T
Q  101 ccttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaat 200  Q
    | |||||||||||| |||||||||||||| | |||||||| |||||||||| ||| ||||||||| |||||||||||||| ||| |||||||||||||||    
T  35174301 cgttaaaaataaaa-atttaataaggtctctcgtggactacctataaagttggttcaccttagacttttaaggttaaaaattaacagaaatgaccaaaat 35174399  T
Q  201 agtaaac-atagaagagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaag 279  Q
    ||||||| |||||||||||||||| |||  |||| |||| ||||||||||||||||  | ||||||||||||||||||||||    
T  35174400 agtaaacgatagaagagttatgggaccattttgaaacacttaatagttaagggaccaaaatgaaaaaataaaataagttaag 35174481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 15 - 279
Target Start/End: Original strand, 12062216 - 12062483
Alignment:
Q  15 aaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataaaa 114  Q
    |||||||||||||||||||||| ||||||| ||||| |||||| |||| ||||||||||||||||||||          ||||||   ||||||||| ||    
T  12062216 aaaaaattaggtgtttgtggttcattataacctacagtagatctctccttgatccaacggtctccatttgaagaaaaaaatcaaatggttaaaaatacaa 12062315  T
Q  115 gatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaaca-tagaa 213  Q
    ||||||||||||| |||||||||  | |||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||  | ||    
T  12062316 gatttaataaggtatatggtggatcacctataaagttggttcaccttagacatttaaggttaaaaactaatggaaatgaccaaaatagtaaacagcaaaa 12062415  T
Q  214 gagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaag 279  Q
    |||| ||||| |||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||    
T  12062416 gagtaatgggaccaaattgagacacttaatagttaagggaccaaactgaaaaaataaaataagttaag 12062483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 16 - 279
Target Start/End: Complemental strand, 23560102 - 23559836
Alignment:
Q  16 aaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataaaag 115  Q
    ||||||||||||||||||||| |||||||||||||||| ||| || | ||||||||||||||||||||         ||||||||  |||||||||||||    
T  23560102 aaaaattaggtgtttgtggttcattataagctacaatatatctcttcttgatccaacggtctccatttaaaaaaaaagatcaaacaattaaaaataaaag 23560003  T
Q  116 atttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-atagaag 214  Q
    |||||||||| |||||||||||| | |||||||||| ||| | |||||||| |||||||||||||||||  || | |||||||||||||||| | |||||    
T  23560002 atttaataagatctatggtggaccacctataaagttggttcatcttagacaattaaggttaaaaactaacggagaggaccaaaatagtaaacgacagaag 23559903  T
Q  215 agttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaag 279  Q
    | |||||||  ||||||||||||| ||||| ||||||||||  ||||| ||||||||||||||||||    
T  23559902 aattatgggatcaaattgagacacttaataattaagggaccaaactgagaaaataaaataagttaag 23559836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 15 - 279
Target Start/End: Original strand, 48867267 - 48867529
Alignment:
Q  15 aaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataaaa 114  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||  ||| |||||         ||| |||   |||||| || ||    
T  48867267 aaaaaattaggtggttgtggtttattataagctacaatagacccctccatgattcaacaatcttcatttaata-----gataaaatggttaaaattacaa 48867361  T
Q  115 gatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaacatag-aa 213  Q
      |||||||| ||||||||| ||| | ||| |||||| ||| |||||||||||||||||||||||||||| ||||| ||||| | |||||||| ||| ||    
T  48867362 attttaataaagtctatggtagaccacctacaaagttggttcaccttagacatttaaggttaaaaactaacagaaaggaccacattagtaaacgtagaaa 48867461  T
Q  214 gagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaag 279  Q
    || | ||||| ||||||||| |||| ||||||||||||||||  | ||| ||||||||||||||||||    
T  48867462 gactaatgggaccaaattgacacacttaatagttaagggaccaaattgagaaaataaaataagttaag 48867529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 122 - 279
Target Start/End: Complemental strand, 21128102 - 21127942
Alignment:
Q  122 taaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-atagaagagttat 220  Q
    ||||||||||||||||| | |||||| ||| ||  |||||||||||||| ||||||||||  |  |||||||||||||| ||||||   |||||||||||    
T  21128102 taaggtctatggtggaccacctataatgttggtccaccttagacatttagggttaaaaacagacggaaatgaccaaaatggtaaacggcagaagagttat 21128003  T
Q  221 ggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaag 279  Q
    ||| ||||||||| |||| ||||||||||| || |  ||||||||||||||||||||||||    
T  21128002 gggaccaaattgacacacttaatagttaagagatcaaactgaaaaaataaaataagttaag 21127942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 103 - 279
Target Start/End: Original strand, 43346367 - 43346546
Alignment:
Q  103 ttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatag 202  Q
    |||||| ||||| ||||| ||||||||||||||||| | |||||| ||| ||  |||||||||||||| ||||||||||  |   |||||||||||||      
T  43346367 ttaaaattaaaaaatttagtaaggtctatggtggaccacctataatgttggtccaccttagacatttagggttaaaaacagacgaaaatgaccaaaatga 43346466  T
Q  203 taaac-atagaagagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaag 279  Q
    ||||| | |||||||||||| | ||||||||| |||| |||||||||||||| |  ||||| ||||||||||||||||||    
T  43346467 taaacgacagaagagttatgagaccaaattgacacacttaatagttaagggatcaaactgagaaaataaaataagttaag 43346546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 279
Target Start/End: Complemental strand, 49333265 - 49333000
Alignment:
Q  14 gaaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataaa 113  Q
    |||||||||||||||||||| || ||||||||||||||||||  ||| |||||||||||| ||| |||||          |||||||  |||||||||||    
T  49333265 gaaaaaattaggtgtttgtgcttcattataagctacaatagactccttcatgatccaacgatctacatttaaaaaaaa--atcaaacggttaaaaataaa 49333168  T
Q  114 agatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-ataga 212  Q
    ||||| ||||||||||||||||||| | | ||||||||  || ||||||||| |||||||| |||||||||  || ||| ||| ||| |||||| | ||     
T  49333167 agatt-aataaggtctatggtggaccacccataaagttgattcaccttagacgtttaaggtgaaaaactaaccgagatggccagaatggtaaacaacagt 49333069  T
Q  213 agagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaag 279  Q
    ||||||||| | |||| || |||||| | ||||| | | ||||  |||||||| | |||||||||||||    
T  49333068 agagttatgagaccaagttaagacactttatagtcatgagaccaaactgaaaataaaaaataagttaag 49333000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 51400500 - 51400314
Alignment:
Q  14 gaaaaaattaggtgtttgtggtttattataagctacaataga-tccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataa 112  Q
    ||||||||||||||||||||||||||| |||| |||||||||  |||||||||||||||||||||||||||         ||||||||  ||||||||||    
T  51400500 gaaaaaattaggtgtttgtggtttattgtaagttacaatagaccccctccatgatccaacggtctccattt-aaaacaaagatcaaacagttaaaaataa 51400402  T
Q  113 aagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaat 200  Q
    |||||||| |||| | ||||| |||  | | ||||| ||  || |||| |||||||||| ||||||||| ||  |||| |||||||||    
T  51400401 aagatttagtaagatttatggaggatcaccaataaaattgattcacctaagacatttaatgttaaaaacaaacggaaaggaccaaaat 51400314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 11 - 256
Target Start/End: Original strand, 26798734 - 26798980
Alignment:
Q  11 taagaaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaat 110  Q
    ||||||||||||||||| |||||||| |  |||||||||||||||| ||||||||||| |||  | | |||||         ||||||||  |||||| |    
T  26798734 taagaaaaaattaggtggttgtggttcaccataagctacaatagattcctccatgatcaaacaattttcatttaaaaaaaacgatcaaacagttaaaatt 26798833  T
Q  111 aaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaacata 210  Q
    |||   |||||||| || |||||||||| | ||| |||||| |||  | |||  ||||||||||||||||||||  || | ||||||||| ||||||  |    
T  26798834 aaattttttaataaagtgtatggtggaccacctacaaagttggttcgctttaaccatttaaggttaaaaactaacggagaggaccaaaatggtaaacgga 26798933  T
Q  211 -gaagagttatggggccaaattgagacacctaatagttaagggacca 256  Q
     ||||| ||||||| |||||||||||||  | ||||||| |||||||    
T  26798934 ggaagaattatgggaccaaattgagacattttatagttaggggacca 26798980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 296
Target Start/End: Complemental strand, 35173266 - 35173147
Alignment:
Q  180 actaatagaaatgaccaaaatagtaaac-atagaagagttatggggccaaattgagacacctaatagttaaggga--ccactgaaaaaataaaataagtt 276  Q
    |||||||||||||||||||||||||||| | | |||||||||| | ||||||||| | || ||||||||||||||    | ||| |||||||||||||||    
T  35173266 actaatagaaatgaccaaaatagtaaacgacaaaagagttatgagaccaaattgaaatacttaatagttaagggatgaaattgagaaaataaaataagtt 35173167  T
Q  277 aagagactacgggatgtatt 296  Q
    ||| ||||  ||||||||||    
T  35173166 aagggactgggggatgtatt 35173147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 158 - 256
Target Start/End: Complemental strand, 25583255 - 25583156
Alignment:
Q  158 ccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-atagaagagttatggggccaaattgagacacctaatagttaagggacca 256  Q
    ||||||||||||||||||||||| ||| ||| | ||||||||||||||||   |||||| ||||||| ||||||||||||   ||||||||| |||||||    
T  25583255 ccttagacatttaaggttaaaaattaacagagaggaccaaaatagtaaacggcagaagacttatgggaccaaattgagacgtttaatagttaggggacca 25583156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 118 - 178
Target Start/End: Complemental strand, 24403423 - 24403363
Alignment:
Q  118 ttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaa 178  Q
    |||||||||| ||||||||||||||||||| ||||||| ||| |||||||||| |||||||    
T  24403423 ttaataaggtttatggtggactatctataatgttagttcaccatagacatttagggttaaa 24403363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 248
Target Start/End: Complemental strand, 53808514 - 53808368
Alignment:
Q  103 ttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatag 202  Q
    |||||| | ||| |||||||||||| |||||||||| | || || |  |  || |||||||| |||| | ||||||||||||| || |||||||||||||    
T  53808514 ttaaaatttaaaaatttaataaggtttatggtggaccacctttagatatgattcaccttagaaatttgatgttaaaaactaatggagatgaccaaaatag 53808415  T
Q  203 taaac-atagaagagttatggggccaaattgagacacctaatagtta 248  Q
    ||||| | | |||| ||||||| ||| |||||||||| | |||||||    
T  53808414 taaacgacataagatttatgggaccagattgagacactttatagtta 53808368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 256
Target Start/End: Original strand, 54653975 - 54654040
Alignment:
Q  192 gaccaaaatagtaaac-atagaagagttatggggccaaattgagacacctaatagttaagggacca 256  Q
    |||||||||||||||| | |||||| ||||||| |||||||||||||| | |||||||||||||||    
T  54653975 gaccaaaatagtaaacgacagaagaattatgggaccaaattgagacactttatagttaagggacca 54654040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 215 - 284
Target Start/End: Complemental strand, 12060741 - 12060670
Alignment:
Q  215 agttatggggccaaattgagacacctaatagttaagggac--cactgaaaaaataaaataagttaagagact 284  Q
    ||||||| |||||||||||||||| ||||||||||| |||   ||||| |||||||||||||||||| ||||    
T  12060741 agttatgaggccaaattgagacacttaatagttaagagactaaactgagaaaataaaataagttaagggact 12060670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 118 - 178
Target Start/End: Complemental strand, 40364503 - 40364443
Alignment:
Q  118 ttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaa 178  Q
    |||||| ||||||||||||||||||||||| ||| ||| ||| ||||||||| ||||||||    
T  40364503 ttaatagggtctatggtggactatctataatgttggttcaccatagacattttaggttaaa 40364443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 282
Target Start/End: Complemental strand, 39133213 - 39133031
Alignment:
Q  103 ttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaata- 201  Q
    |||||| ||||| ||||| |||||  |||||||||| | || ||||  | ||| ||||||||||||| | |||||||||||| ||| | |||||||| |     
T  39133213 ttaaaattaaaaaatttagtaaggcatatggtggaccacctttaaatatggttcaccttagacatttgatgttaaaaactaacagagaggaccaaaagag 39133114  T
Q  202 gtaaacatagaagagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaagaga 282  Q
    ||||  | ||||||  || ||| |||||||||||||| | ||||||| ||||||  | ||||||   ||||||||||||||||    
T  39133113 gtaacgagagaagacataagggaccaaattgagacactttatagttaggggaccaaattgaaaaccaaaaataagttaagaga 39133031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 256
Target Start/End: Original strand, 51825628 - 51825695
Alignment:
Q  190 atgaccaaaatagtaaac-atagaagagttatggggccaaattgagacacctaatagttaagggacca 256  Q
    |||||||||||||||||| | |||||| ||||||| ||||||||| |||| | |||||||||||||||    
T  51825628 atgaccaaaatagtaaacgacagaagatttatgggaccaaattgaaacactttatagttaagggacca 51825695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 279
Target Start/End: Complemental strand, 43345425 - 43345336
Alignment:
Q  193 accaaaatagtaaac-atagaagagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaag 279  Q
    |||||||| |||||| | |||||| ||||||| ||||||||| |||  | ||||||||||||||  ||||| ||||||||||||||||||    
T  43345425 accaaaatggtaaacgagagaagatttatgggaccaaattgaaacattttatagttaagggacctaactgagaaaataaaataagttaag 43345336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 20314696 - 20314747
Alignment:
Q  118 ttaataaggtctatggtggactatctataaagttagtttaccttagacattt 169  Q
    |||||||||||||||||||||||||||||| ||| || || | |||||||||    
T  20314696 ttaataaggtctatggtggactatctataatgttggtctaacatagacattt 20314747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 282
Target Start/End: Complemental strand, 48866229 - 48866155
Alignment:
Q  210 agaagagttatggggccaaattgagacacctaatagttaagggacca--ctgaaaaaataaaataagttaagaga 282  Q
    |||||| |||| || ||||||||| |||| |||||||| |||||| |  |||| |||||||||||||||||||||    
T  48866229 agaagacttataggaccaaattgacacacttaatagttcagggactaaactgagaaaataaaataagttaagaga 48866155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 256
Target Start/End: Complemental strand, 11219626 - 11219472
Alignment:
Q  103 ttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatag 202  Q
    |||||| ||||| |||||||| | ||||||||| || | || ||||  | ||| ||||||||  ||| | ||||||| ||||  || |||||||||||||    
T  11219626 ttaaaattaaaaaatttaatacgatctatggtgaaccacctttaaatatggttcaccttagaattttgatgttaaaatctaacggagatgaccaaaatag 11219527  T
Q  203 taaac-atagaagagttatggggccaaattgagacacctaatagttaagggacca 256  Q
    |||||   |||||| | ||| | |||||||||||||| | ||||||| |||||||    
T  11219526 taaacggcagaagactcatgagaccaaattgagacactttatagttaggggacca 11219472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 256
Target Start/End: Original strand, 11220667 - 11220732
Alignment:
Q  192 gaccaaaatagtaaac-atagaagagttatggggccaaattgagacacctaatagttaagggacca 256  Q
    |||||||||||||||| | |||||| |||| || |||||||||||||| | ||||||| |||||||    
T  11220667 gaccaaaatagtaaacgacagaagatttataggaccaaattgagacactttatagttaggggacca 11220732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 147
Target Start/End: Complemental strand, 20286733 - 20286704
Alignment:
Q  118 ttaataaggtctatggtggactatctataa 147  Q
    ||||||||||||||||||||||||||||||    
T  20286733 ttaataaggtctatggtggactatctataa 20286704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 147
Target Start/End: Complemental strand, 20335432 - 20335403
Alignment:
Q  118 ttaataaggtctatggtggactatctataa 147  Q
    ||||||||||||||||||||||||||||||    
T  20335432 ttaataaggtctatggtggactatctataa 20335403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 147
Target Start/End: Original strand, 20336589 - 20336618
Alignment:
Q  118 ttaataaggtctatggtggactatctataa 147  Q
    ||||||||||||||||||||||||||||||    
T  20336589 ttaataaggtctatggtggactatctataa 20336618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 147
Target Start/End: Original strand, 21074212 - 21074241
Alignment:
Q  118 ttaataaggtctatggtggactatctataa 147  Q
    ||||||||||||||||||||||||||||||    
T  21074212 ttaataaggtctatggtggactatctataa 21074241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 279
Target Start/End: Original strand, 23561140 - 23561224
Alignment:
Q  198 aatagtaaacat-agaagagttatggggccaaattgagacacctaatagttaagggacca--ctgaaaaaataaaataagttaag 279  Q
    |||||||||| | |||||| |||| || ||||||| |||||| ||||| |||||||| ||  |||| ||||||||||||||||||    
T  23561140 aatagtaaacgtcagaagaattataggaccaaattaagacacttaataattaagggatcaaactgagaaaataaaataagttaag 23561224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 29536821 - 29536764
Alignment:
Q  192 gaccaaaatagtaaac-atagaagagttatggggccaaattgagacacctaatagtta 248  Q
    |||||||||||||||| | |||||| ||||||| |||||||||||||| | |||||||    
T  29536821 gaccaaaatagtaaacgaaagaagatttatgggaccaaattgagacactttatagtta 29536764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 184
Target Start/End: Complemental strand, 32979284 - 32979203
Alignment:
Q  103 ttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaa 184  Q
    |||||| ||||| |||||||| ||||||||||| || | || ||||  ||||| ||||||| | ||||| ||||||||||||    
T  32979284 ttaaaattaaaaaatttaatacggtctatggtgaaccacctttaaatatagttcaccttagtcttttaatgttaaaaactaa 32979203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 147
Target Start/End: Original strand, 53624294 - 53624323
Alignment:
Q  118 ttaataaggtctatggtggactatctataa 147  Q
    ||||||||||||||||||||||||||||||    
T  53624294 ttaataaggtctatggtggactatctataa 53624323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 178
Target Start/End: Complemental strand, 18442432 - 18442372
Alignment:
Q  118 ttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaa 178  Q
    ||||||||||||||||||||||||| |||| ||| ||  ||| |||||||||  |||||||    
T  18442432 ttaataaggtctatggtggactatcgataatgttggtccaccatagacatttggggttaaa 18442372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 178
Target Start/End: Complemental strand, 19487506 - 19487446
Alignment:
Q  118 ttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaa 178  Q
    ||||||||||||||||||||||||| |||| ||| ||  ||| |||||||||  |||||||    
T  19487506 ttaataaggtctatggtggactatcgataatgttggtccaccatagacatttggggttaaa 19487446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 48254809 - 48254885
Alignment:
Q  103 ttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaa 179  Q
    |||||| ||||| | ||| |||||| |||||||||| | |||||| ||| ||  ||||||||||||||| |||||||    
T  48254809 ttaaaattaaaaaacttagtaaggtttatggtggaccacctataatgttggtccaccttagacatttaatgttaaaa 48254885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 93 - 296
Target Start/End: Complemental strand, 20308811 - 20308605
Alignment:
Q  93 gatcaaacccttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatg 192  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||| |||| ||||||    
T  20308811 gatcaaaccattaaaaataaaagatttaataaggtctatggcggactatctataaagttggttcaccttagacatttaaggttaaaaattaatggaaatg 20308712  T
Q  193 accaaaatagtaaac-atagaagagttatggggccaaattgagacacctaatagttaagggac--cactgaaaaaataaaataagttaagagactacggg 289  Q
    ||||||||||||||| | |||||||||||| | |||||||||||||| |||||||||||  ||   ||||| |||||||||||||||||||||  | |||    
T  20308711 accaaaatagtaaacgacagaagagttatgagaccaaattgagacacttaatagttaagatactaaactgagaaaataaaataagttaagagatcaaggg 20308612  T
Q  290 atgtatt 296  Q
    |||||||    
T  20308611 atgtatt 20308605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 93 - 296
Target Start/End: Complemental strand, 21095444 - 21095238
Alignment:
Q  93 gatcaaacccttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatg 192  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||| |||| ||||||    
T  21095444 gatcaaaccattaaaaataaaagatttaataaggtctatggcggactatctataaagttggttcaccttagacatttaaggttaaaaattaatggaaatg 21095345  T
Q  193 accaaaatagtaaac-atagaagagttatggggccaaattgagacacctaatagttaagggac--cactgaaaaaataaaataagttaagagactacggg 289  Q
    ||||||||||||||| | |||||||||||| | |||||||||||||| |||||||||||  ||   ||||| |||||||||||||||||||||  | |||    
T  21095344 accaaaatagtaaacgacagaagagttatgagaccaaattgagacacttaatagttaagatactaaactgagaaaataaaataagttaagagatcaaggg 21095245  T
Q  290 atgtatt 296  Q
    |||||||    
T  21095244 atgtatt 21095238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 14 - 279
Target Start/End: Original strand, 2421124 - 2421392
Alignment:
Q  14 gaaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataaa 113  Q
    ||||||||||||||||||||||| ||||||| |||||||||||| |||  |||||||| |||||||||||         ||||||||  |||||||||||    
T  2421124 gaaaaaattaggtgtttgtggttcattataaactacaatagatctctcattgatccaatggtctccatttaaagaaaaagatcaaacggttaaaaataaa 2421223  T
Q  114 agatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-ataga 212  Q
    ||||||||||||||||||| ||||| |||||||||||| ||| |||||||||||||||||||||||||||| | | | |||||||||| |||||   |||    
T  2421224 agatttaataaggtctatgatggaccatctataaagttggttcaccttagacatttaaggttaaaaactaacaaagaggaccaaaataataaacggcaga 2421323  T
Q  213 agagttatggggccaaattgagacacctaatagttaagggac--cactgaaaaaataaaataagttaag 279  Q
    ||| || |||| ||||||||| |||| ||||| |||||||||   ||||| ||| ||||||||||||||    
T  2421324 agatttctgggaccaaattgaaacacttaatatttaagggactaaactgataaattaaaataagttaag 2421392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 14 - 279
Target Start/End: Complemental strand, 8095632 - 8095363
Alignment:
Q  14 gaaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnnga-tcaaacccttaaaaataa 112  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||  ||||||||||||||||||||          | |||||   ||||| |||     
T  8095632 gaaaaaattaggtgtttgtggtttattataacctacaatagatctctctttgatccaacggtctccatttgaagaaaaaaaatcaaatggttaaagatac 8095533  T
Q  113 aagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-atag 211  Q
    ||||||||||||||| ||||||| |  | |||||||||| ||| |||||||||||||||| |||||||||||  |||| |||||||||||||||| | |     
T  8095532 aagatttaataaggtatatggtgcatcacctataaagttggttcaccttagacatttaagattaaaaactaacggaaaggaccaaaatagtaaacgacaa 8095433  T
Q  212 aagagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaag 279  Q
    |||||| ||||| |||||||||||||| ||||||||||||||||  ||||| ||||||||||||||||||    
T  8095432 aagagtaatgggaccaaattgagacacttaatagttaagggaccaaactgagaaaataaaataagttaag 8095363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 14 - 279
Target Start/End: Original strand, 13366883 - 13367149
Alignment:
Q  14 gaaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataaa 113  Q
    ||||||||||||||||||||||| |||| ||||||||||||||| || | ||||||||| ||||||| ||          |||||||  |||||||||||    
T  13366883 gaaaaaattaggtgtttgtggttcattacaagctacaatagatctctacttgatccaacagtctccaattaaaaaaat--atcaaacggttaaaaataaa 13366980  T
Q  114 agatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-ataga 212  Q
    || |||||||||||||||||||||| | |||||||||| ||| ||||||||||||||||||||||||||||  || | ||||||||||||||||   |||    
T  13366981 aggtttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaaaactaacggagaggaccaaaatagtaaacggcaga 13367080  T
Q  213 agagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaag 279  Q
    ||| ||||||| ||||||| | |||| | ||||||||||||||  | ||||||||||||||||||||||    
T  13367081 agatttatgggaccaaattaaaacactttatagttaagggaccaaagtgaaaaaataaaataagttaag 13367149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 15 - 237
Target Start/End: Complemental strand, 35944191 - 35943969
Alignment:
Q  15 aaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataaaa 114  Q
    |||||||||| |||| | |||| |||||||| ||||||||| |||| |||||||||||| | |||||||         ||||||||  ||||||||||||    
T  35944191 aaaaaattagttgttagcggttcattataagttacaatagaccccttcatgatccaacgatttccatttaaaataaa-gatcaaacagttaaaaataaaa 35944093  T
Q  115 gatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-atagaa 213  Q
    ||||||||||| |||||||||||  | |||||||||| ||| ||||||||||||||| ||||||||||||  || ||||||||||||||||||   | ||    
T  35944092 gatttaataagatctatggtggatcacctataaagttggttcaccttagacatttaaagttaaaaactaacggagatgaccaaaatagtaaactgcataa 35943993  T
Q  214 gagttatggggccaaattgagaca 237  Q
    || ||||||| |||||||||||||    
T  35943992 gatttatgggaccaaattgagaca 35943969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 256
Target Start/End: Complemental strand, 44606423 - 44606181
Alignment:
Q  14 gaaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataaa 113  Q
    |||||||| |||||||||||||| ||||| || || |||||||| || ||||||| |||  | |||||||         ||||||||  |||||||||||    
T  44606423 gaaaaaatcaggtgtttgtggttcattattaggtaaaatagatctcttcatgatctaacaatatccatttaaaaaaaa-gatcaaacggttaaaaataaa 44606325  T
Q  114 agatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaaca-taga 212  Q
    |||||||| |||||||||||||||| | |||||||||| ||| ||||||||||||||||||||||||||||| || | || ||||||| ||||||  |||    
T  44606324 agatttaacaaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaaaactaatggagaggatcaaaataataaacagaaga 44606225  T
Q  213 agagttatggggccaaattgagacacctaatagttaagggacca 256  Q
    ||| ||||||| ||||||||| ||||   ||||||| |||||||    
T  44606224 agatttatgggaccaaattgaaacactatatagttaggggacca 44606181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 14 - 248
Target Start/End: Complemental strand, 19913775 - 19913542
Alignment:
Q  14 gaaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataaa 113  Q
    ||||||||| ||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||          ||||||   ||||||| |      
T  19913775 gaaaaaatttggtgtttgtggttcattataagctacgatagatccctccttgatccaacggtctccatttaaaaaaat--atcaaatggttaaaaacatg 19913678  T
Q  114 agatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaa-cataga 212  Q
     |||||||||| ||||||||||||| |||||||||||| ||| |||||||| |||||||||||||||||||  || | |||||||||  |||| |  |||    
T  19913677 tgatttaataaagtctatggtggaccatctataaagttggttcaccttagaaatttaaggttaaaaactaacggagaggaccaaaatgataaaccgcaga 19913578  T
Q  213 agagttatggggccaaattgagacacctaatagtta 248  Q
    ||| ||||||| ||||||||| |||| | |||||||    
T  19913577 agacttatgggaccaaattgaaacactttatagtta 19913542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 256
Target Start/End: Complemental strand, 36070466 - 36070220
Alignment:
Q  14 gaaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccattt--nnnnnnnnngatcaaaccct-taaaaat 110  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||  ||||||||| ||||            | | |||  |  ||||||    
T  36070466 gaaaaaattaggtgtttgtggttcattataagctacaatagattcctccataatttaacggtctctatttaaaaaaaaaaaaaccgaacaataaaaaaat 36070367  T
Q  111 aaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-at 209  Q
    |||| ||||||||||||||||||||||| | |||||||||| ||| |||||||||||||||||| ||| |||||  |  | ||||||||||||||||       
T  36070366 aaaatatttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaaggtcaaagactaacggggaggaccaaaatagtaaacggc 36070267  T
Q  210 agaagagttatggggccaaattgagacacctaatagttaagggacca 256  Q
    |||||| |||||||  ||||||||||||| | ||||||| |||||||    
T  36070266 agaagatttatgggatcaaattgagacactttatagttaggggacca 36070220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 180
Target Start/End: Original strand, 37324521 - 37324685
Alignment:
Q  14 gaaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataaa 113  Q
    ||||||||| |||||||||||||  ||||||||||||||||||||||||||||| ||| | |||||||||         ||||||||   ||| ||||||    
T  37324521 gaaaaaattcggtgtttgtggttcgttataagctacaatagatccctccatgattcaatgatctccattt--aaaaaaagatcaaacggctaagaataaa 37324618  T
Q  114 agatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaa 180  Q
    |||||||||||| | |||||||||| | |||||||||| ||| ||||||||||||||| || |||||    
T  37324619 agatttaataagatttatggtggaccacctataaagttggttcaccttagacatttaaagtgaaaaa 37324685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 103 - 253
Target Start/End: Original strand, 24069366 - 24069517
Alignment:
Q  103 ttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatag 202  Q
    |||||| ||||| | ||| ||||||||||||||||| | |||||| ||| ||  ||||||||||||||  |||||||||  |  |||| ||||||||| |    
T  24069366 ttaaaattaaaaaacttagtaaggtctatggtggaccacctataatgttggtccaccttagacatttagtgttaaaaacagacggaaaggaccaaaatgg 24069465  T
Q  203 taaac-atagaagagttatggggccaaattgagacacctaatagttaaggga 253  Q
    |||||   |||||||||||||| |||||||||||||| | ||||||||||||    
T  24069466 taaacggcagaagagttatgggaccaaattgagacactttatagttaaggga 24069517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 296
Target Start/End: Original strand, 8096554 - 8096661
Alignment:
Q  192 gaccaaaatagtaaaca-tagaagagttatggggccaaattgagacacctaatagttaagggacca--ctgaaaaaataaaataagttaagagactacgg 288  Q
    ||||||||||||||||  || |||||||||| | ||||||| |||| | ||||||||||| ||| |  ||||||||||||||||||||||| ||||| ||    
T  8096554 gaccaaaatagtaaacggtaaaagagttatgagaccaaattaagacgcttaatagttaagagactaaactgaaaaaataaaataagttaagggactaggg 8096653  T
Q  289 gatgtatt 296  Q
    ||||||||    
T  8096654 gatgtatt 8096661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 175 - 296
Target Start/End: Complemental strand, 22620019 - 22619895
Alignment:
Q  175 taaaaactaatagaaatgaccaaaatagtaaacatag-aagagttatggggccaaattgagacacctaatagttaagggacca--ctgaaaaaataaaat 271  Q
    |||||||||| ||||| ||||| | ||||||||| || |||| ||||||| ||||||||| |||| ||| |||||||||| ||  |||| ||||||||||    
T  22620019 taaaaactaacagaaaagaccacattagtaaacagaggaagatttatgggaccaaattgacacacttaaaagttaagggatcaaactgagaaaataaaat 22619920  T
Q  272 aagttaagagactacgggatgtatt 296  Q
    |||||||| |||   ||||||||||    
T  22619919 aagttaagggaccgtgggatgtatt 22619895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 118 - 282
Target Start/End: Complemental strand, 39220860 - 39220693
Alignment:
Q  118 ttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-atagaagag 216  Q
    ||||||||||||||||| |||||  | |||  ||  || |||||||||||||||||||||||||||| ||| || || ||||||||||||   ||||||     
T  39220860 ttaataaggtctatggtagactacttttaatattgtttcaccttagacatttaaggttaaaaactaacagagataacgaaaatagtaaacggcagaagac 39220761  T
Q  217 ttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaagaga 282  Q
    ||| ||   |||||||| |||| ||||||||||  ||||  | ||| ||| |||||||||||||||||    
T  39220760 ttaaggaatcaaattgaaacacttaatagttaatagaccaaaatgagaaattaaaataagttaagaga 39220693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 249
Target Start/End: Original strand, 34617115 - 34617262
Alignment:
Q  103 ttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatag 202  Q
    |||||| ||||| ||||| ||||||||| ||||||| | || ||| ||| ||  |||||| ||||||| ||||||||||| |  ||||||||||||||      
T  34617115 ttaaaattaaaaaatttagtaaggtctacggtggaccacctgtaatgttggtccaccttatacatttagggttaaaaactgacggaaatgaccaaaatga 34617214  T
Q  203 taaac-atagaagagttatggggccaaattgagacacctaatagttaa 249  Q
    |||||   ||||||| |||||| | ||||||| |||| ||||||||||    
T  34617215 taaacggaagaagagctatgggactaaattgacacacttaatagttaa 34617262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 116 - 253
Target Start/End: Complemental strand, 7486260 - 7486122
Alignment:
Q  116 atttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaaca-tagaag 214  Q
    ||||||||||||||||||||||| |  | ||||  | ||| || |||||||||| | ||||||||||||  || | |||||||||||||||||  | |||    
T  7486260 atttaataaggtctatggtggacaacatttaaacatggttcactttagacatttgatgttaaaaactaacggagaggaccaaaatagtaaacagcaaaag 7486161  T
Q  215 agttatggggccaaattgagacacctaatagttaaggga 253  Q
    | ||||||| |||||||||  ||| | ||||||||||||    
T  7486160 atttatgggaccaaattgaagcactttatagttaaggga 7486122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 115 - 248
Target Start/End: Complemental strand, 37472586 - 37472453
Alignment:
Q  115 gatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-atagaa 213  Q
    |||||||||||||||||| ||||| |  |||||||||  || ||   |||||||||||||||||||  ||| |||| ||||||||| |||||| | | ||    
T  37472586 gatttaataaggtctatg-tggaccacatataaagttgtttcacaacagacatttaaggttaaaaataaatggaaaggaccaaaatggtaaacgacaaaa 37472488  T
Q  214 gagttatggggccaaattgagacacctaatagtta 248  Q
    || ||||||| |||||||||||||| | |||||||    
T  37472487 gacttatgggaccaaattgagacactttatagtta 37472453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 231
Target Start/End: Complemental strand, 31871594 - 31871462
Alignment:
Q  93 gatcaaacccttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatg 192  Q
    ||||||||  ||||||||||||||||| ||||||| |||| ||||| ||       ||| ||  ||||||||| |||||||||||||||||| ||||| |    
T  31871594 gatcaaacggttaaaaataaaagattttataaggtttatgatggaccat-------gttggtccaccttagacgtttaaggttaaaaactaacagaaagg 31871502  T
Q  193 accaaaatagtaaac-atagaagagttatggggccaaatt 231  Q
    ||||||||| ||||| | |||||| | ||||| |||||||    
T  31871501 accaaaataataaacgacagaagattcatgggaccaaatt 31871462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 207
Target Start/End: Complemental strand, 8395282 - 8395087
Alignment:
Q  11 taagaaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaat 110  Q
    ||||||||||||||||| |||||||| |  ||||||||| |||||| ||||||||||| |||| | | |||||         ||||||||  |||||| |    
T  8395282 taagaaaaaattaggtggttgtggttcaccataagctacgatagattcctccatgatcaaacgattttcattt-aaaaaaacgatcaaacggttaaaatt 8395184  T
Q  111 aaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac 207  Q
    |||   |||||||| || |||||||||| | ||| |||||| ||| |  |||  ||||||||||||||||||||  || | ||||||||| ||||||    
T  8395183 aaattttttaataaagtgtatggtggaccacctacaaagttggttcattttaaccatttaaggttaaaaactaacggagaggaccaaaatggtaaac 8395087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 253
Target Start/End: Original strand, 37276163 - 37276314
Alignment:
Q  103 ttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatag 202  Q
    |||||| ||||| |||||||| ||||||| ||| || | || ||||  | ||| ||||||||| ||| | |||||||||||| ||| | |||||| |||     
T  37276163 ttaaaattaaaaaatttaatatggtctatagtgaaccacctttaaatatggttcaccttagacttttgatgttaaaaactaacagagaggaccaatataa 37276262  T
Q  203 taaacat-agaagagttatggggccaaattgagacacctaatagttaaggga 253  Q
    |||||   | |||| ||||||| |||||||||||||| | ||||||||||||    
T  37276263 taaacggcaaaagatttatgggaccaaattgagacactttatagttaaggga 37276314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 207
Target Start/End: Complemental strand, 45194664 - 45194575
Alignment:
Q  118 ttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac 207  Q
    |||||||||| ||||||||| ||  | ||| |||  ||||| |||||||||||||| |||||| |||| || |||| |||||||||||||    
T  45194664 ttaataaggtttatggtggattacttttaatgttgttttactttagacatttaaggctaaaaattaatggagatgatcaaaatagtaaac 45194575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 199
Target Start/End: Complemental strand, 10052300 - 10052204
Alignment:
Q  103 ttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaa 199  Q
    |||||| | ||| |||||||||||| |||||||||| | || ||||  | ||| | ||||||||||||| ||||||||||||  || ||||||||||    
T  10052300 ttaaaacttaaaaatttaataaggtttatggtggaccacctttaaatatggttcatcttagacatttaatgttaaaaactaaaggagatgaccaaaa 10052204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 248
Target Start/End: Original strand, 16363774 - 16363878
Alignment:
Q  145 taaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaaca-tagaagagttatggggccaaattgagacacctaat 243  Q
    ||||||| ||| ||||||||||||||| ||||| ||||||  || | |||||||||||||||||  ||| || |||||||  |||||||||| || | ||    
T  16363774 taaagttggttcaccttagacatttaaagttaataactaacggagaggaccaaaatagtaaacagcagacgatttatgggatcaaattgagatactttat 16363873  T
Q  244 agtta 248  Q
    |||||    
T  16363874 agtta 16363878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 296
Target Start/End: Original strand, 22621163 - 22621250
Alignment:
Q  211 gaagagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaagagactacgggatgtatt 296  Q
    ||||| ||||||| ||||||||  |||| |||||||||||||| |  ||||| |||||||||||||||||| |||   ||||||||||    
T  22621163 gaagacttatgggaccaaattgccacacttaatagttaagggatcaaactgagaaaataaaataagttaagggaccgagggatgtatt 22621250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 256
Target Start/End: Original strand, 19914913 - 19914980
Alignment:
Q  190 atgaccaaaatagtaaaca-tagaagagttatggggccaaattgagacacctaatagttaagggacca 256  Q
    ||||||||||| ||||||  ||||||| |||||||  ||||||||||||| | |||||||||||||||    
T  19914913 atgaccaaaatggtaaacggtagaagatttatgggtacaaattgagacactttatagttaagggacca 19914980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 34616215 - 34616146
Alignment:
Q  212 aagagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaag 279  Q
    |||| ||||||| |||||||||||||| | ||||||||| || |  ||||| ||||||||||||||||||    
T  34616215 aagatttatgggaccaaattgagacactttatagttaagagatcaaactgagaaaataaaataagttaag 34616146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 29738555 - 29738518
Alignment:
Q  14 gaaaaaattaggtgtttgtggtttattataagctacaa 51  Q
    |||||||||||||||||||| || ||||||||||||||    
T  29738555 gaaaaaattaggtgtttgtgattcattataagctacaa 29738518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 256
Target Start/End: Complemental strand, 36756206 - 36756106
Alignment:
Q  157 accttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-atagaagagttatggggccaaattgagacacctaatagttaagggacc 255  Q
    |||||||| |||| | ||||||||||||  || |||||||||||||||||| | | |||| ||||| | ||| ||||| |||| | ||||||| ||||||    
T  36756206 accttagaaatttgatgttaaaaactaacggagatgaccaaaatagtaaacgacataagatttatgtgaccagattgaaacactttatagttatgggacc 36756107  T
Q  256 a 256  Q
    |    
T  36756106 a 36756106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 279
Target Start/End: Original strand, 43386730 - 43386801
Alignment:
Q  210 agaagagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaag 279  Q
    |||||||||||||| |||||||||||||  | ||||||| ||||||  ||||||||   |||||||||||||    
T  43386730 agaagagttatgggaccaaattgagacattttatagttaggggaccaaactgaaaaccaaaaataagttaag 43386801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 5e-50; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 14 - 296
Target Start/End: Complemental strand, 22168058 - 22167779
Alignment:
Q  14 gaaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataaa 113  Q
    ||||| ||||||||||||||||| ||||||| |||||||||||| |||  |||||||| |||||||||||         ||||||||| |||||||||||    
T  22168058 gaaaatattaggtgtttgtggttcattataaactacaatagatctctcattgatccaatggtctccatttaaaaaaaaagatcaaaccgttaaaaataaa 22167959  T
Q  114 agatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-ataga 212  Q
    ||||||||||||||||||||||||| |||||||||||| ||| ||      |||||||||||||||||||| ||| |  ||||||||| |||||   |||    
T  22167958 agatttaataaggtctatggtggaccatctataaagtttgttcac------catttaaggttaaaaactaacagagagaaccaaaataataaacggcaga 22167865  T
Q  213 agagttatggggccaaattgagacacctaatagttaagggac--cactgaaaaaataaaataagttaagagactacgggatgtatt 296  Q
    ||| ||||||| ||||||||| |||| ||||| |||||||||   ||||| ||| |||||||||||||| || || ||||||||||    
T  22167864 agatttatgggaccaaattgaaacacttaatatttaagggactaaactgagaaattaaaataagttaagggattaggggatgtatt 22167779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 15 - 296
Target Start/End: Original strand, 51726676 - 51726960
Alignment:
Q  15 aaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaa-ataaa 113  Q
    ||||||||||||||| ||||||  |||||||||| |||||||| |||| ||||||||||||||| ||||          |||||||  |||||| |||||    
T  51726676 aaaaaattaggtgttcgtggttctttataagctataatagatctctccttgatccaacggtctctatttaaaaagagt-atcaaacggttaaaaaataaa 51726774  T
Q  114 agatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-ataga 212  Q
    ||||||||||||||||||||||||| | |||||||||| ||| ||||||||||||||||||||||||||||  |  | ||| |||||||||||| | |||    
T  51726775 agatttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaaaactaacggtgaggactaaaatagtaaacgacaga 51726874  T
Q  213 agagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaagagactacgggatgtatt 296  Q
    ||| ||||||  |||||||||||||| | ||||||||  ||||  ||||| |||||||||||||||||| |||   ||||||||||    
T  51726875 agatttatggaaccaaattgagacactttatagttaaatgaccaaactgagaaaataaaataagttaagggaccgggggatgtatt 51726960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 93 - 284
Target Start/End: Complemental strand, 14169824 - 14169631
Alignment:
Q  93 gatcaaacccttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatg 192  Q
    ||||||||| ||||||| |||||||| ||||||||||||||||| | | |||||||||| ||| |||||||||||||||||||||||||||| ||| | |    
T  14169824 gatcaaaccgttaaaaa-aaaagattcaataaggtctatggtgggccacctataaagttggttcaccttagacatttaaggttaaaaactaacagataag 14169726  T
Q  193 accaaaatagtaaac-atagaagagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaagagact 284  Q
    ||||||||||||||| | | |||| ||||||| |||||||||||||  | |||||||| |||||  ||||| |||||||||||||||||| ||||    
T  14169725 accaaaatagtaaacgacaaaagatttatgggaccaaattgagacattttatagttaaaggaccaaactgagaaaataaaataagttaagggact 14169631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 248
Target Start/End: Original strand, 13930507 - 13930741
Alignment:
Q  14 gaaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataaa 113  Q
    ||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||| | |||||         ||||||||  ||||||||| |    
T  13930507 gaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttcattttaagaaat-gatcaaacggttaaaaatata 13930605  T
Q  114 agatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-ataga 212  Q
     |||||||||||||||||||| ||| |  |||||||||  || ||  ||||||||||||||||||||| ||  |||| ||||||||| |||||| | | |    
T  13930606 tgatttaataaggtctatggtagaccacatataaagttgtttcacaatagacatttaaggttaaaaacaaacggaaaggaccaaaatggtaaacgacata 13930705  T
Q  213 agagttatggggccaaattgagacacctaatagtta 248  Q
    ||| ||||||| |||||||||||||| | |||||||    
T  13930706 agacttatgggaccaaattgagacactttatagtta 13930741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 14 - 248
Target Start/End: Original strand, 14071036 - 14071269
Alignment:
Q  14 gaaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataaa 113  Q
    ||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||| | |||||         ||||||||  ||||||||| |    
T  14071036 gaaaaaattaggtgtttgtggttcaatataagctacaatagacccctccatgatccaacggttttcattt-taagaaatgatcaaacggttaaaaatata 14071134  T
Q  114 agatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-ataga 212  Q
     |||||||||||||||||||| ||| |  |||||| ||  || ||  ||||||||||||||||||||| ||  |||| ||||||||| |||||| | |||    
T  14071135 tgatttaataaggtctatggtagaccacatataaa-ttgtttcacaatagacatttaaggttaaaaacaaacggaaaggaccaaaatggtaaacgacaga 14071233  T
Q  213 agagttatggggccaaattgagacacctaatagtta 248  Q
    ||| ||||||| |||||||||||||| | |||||||    
T  14071234 agacttatgggaccaaattgagacactttatagtta 14071269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 105 - 248
Target Start/End: Complemental strand, 21277188 - 21277044
Alignment:
Q  105 aaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagta 204  Q
    |||||||||||||||||||||||||||||||||| | |||||||||| ||| |||||||||||||||||| |||||||||| || | || ||||||||||    
T  21277188 aaaaataaaagatttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaaggtcaaaaactaatggagaggatcaaaatagta 21277089  T
Q  205 aac-atagaagagttatggggccaaattgagacacctaatagtta 248  Q
    |||   |||||| ||||||| ||||||||||| || | |||||||    
T  21277088 aacggcagaagatttatgggaccaaattgagatactttatagtta 21277044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 116 - 279
Target Start/End: Complemental strand, 8092781 - 8092615
Alignment:
Q  116 atttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaacata-gaag 214  Q
    ||||||||||||||||||||||| | |||||||||| ||| |||||||| ||||||||||||| |||||  |||| |||||||  |||||||  | ||||    
T  8092781 atttaataaggtctatggtggaccacctataaagttggttcaccttagatatttaaggttaaatactaacggaaaggaccaaatcagtaaacggaggaag 8092682  T
Q  215 agttatggggccaaattgagacacctaatagttaagggac--cactgaaaaaataaaataagttaag 279  Q
    | ||||||  ||||||||| |||| |||||||||||||||  |||||| ||||||||||||||||||    
T  8092681 atttatggaaccaaattgatacacttaatagttaagggactacactgagaaaataaaataagttaag 8092615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 118 - 275
Target Start/End: Original strand, 19466140 - 19466300
Alignment:
Q  118 ttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-atagaagag 216  Q
    |||||||||||||||||||||||||||||| ||||||  ||| ||||||||| ||||||||||||||  || |  |||| |||||||||| | ||||||     
T  19466140 ttaataaggtctatggtggactatctataatgttagtccaccatagacatttgaggttaaaaactaacggagagaaccacaatagtaaacgacagaagat 19466239  T
Q  217 ttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagt 275  Q
    ||||||| |||||||||||||| | |||||||| |||||  ||||| ||||||||||||||    
T  19466240 ttatgggaccaaattgagacactttatagttaaaggaccaaactgagaaaataaaataagt 19466300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 118 - 279
Target Start/End: Complemental strand, 36509992 - 36509828
Alignment:
Q  118 ttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-atagaagag 216  Q
    |||||||||||||||||||| ||||||||| ||||||  ||| ||||||||| ||||||||||||||  || |  |||||||||||||||   ||||||     
T  36509992 ttaataaggtctatggtggaatatctataatgttagtccaccatagacatttgaggttaaaaactaacggagagaaccaaaatagtaaacggcagaagat 36509893  T
Q  217 ttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaag 279  Q
    ||||||  ||||||||| |||| | ||||||||||||||  ||||| ||||||||||||||||||    
T  36509892 ttatggaaccaaattgaaacactttatagttaagggaccaaactgagaaaataaaataagttaag 36509828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 279
Target Start/End: Complemental strand, 40109515 - 40109378
Alignment:
Q  145 taaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaacata-gaagagttatggggccaaattgagacacctaat 243  Q
    |||||||| || |||||||||||||||| ||||||||||| ||||| ||||| | ||||||||  | ||||| ||||||| ||||||||| |||| |||     
T  40109515 taaagttacttcaccttagacatttaagattaaaaactaacagaaaggaccacattagtaaacggatgaagatttatgggaccaaattgacacacttaaa 40109416  T
Q  244 agttaagggacc--actgaaaaaataaaataagttaag 279  Q
    |||||||||| |  ||||| ||||||||||||||||||    
T  40109415 agttaagggatcaaactgagaaaataaaataagttaag 40109378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 149 - 296
Target Start/End: Original strand, 24517580 - 24517730
Alignment:
Q  149 gttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaacata-gaagagttatggggccaaattgagacacctaatagtt 247  Q
    ||||||| |||||||||||||||| ||||||||||| ||||| ||||| | ||||||||| | ||||| ||||||| ||||||||| |||| ||| | ||    
T  24517580 gttagttcaccttagacatttaagattaaaaactaacagaaaggaccacattagtaaacagaggaagatttatgggaccaaattgacacacttaaaaatt 24517679  T
Q  248 aaggga--ccactgaaaaaataaaataagttaagagactacgggatgtatt 296  Q
    ||||||    ||||| |||||||||||||||||| |||   ||||||||||    
T  24517680 aagggattaaactgagaaaataaaataagttaagggaccgtgggatgtatt 24517730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 177 - 296
Target Start/End: Original strand, 36511325 - 36511447
Alignment:
Q  177 aaaactaatagaaatgaccaaaatagtaaac-atagaagagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataa 273  Q
    ||||||||  || |||||||||||||||||| | |||||| ||||||| |||||||||||||| | ||||||||||||||  ||||| ||||||||||||    
T  36511325 aaaactaacggagatgaccaaaatagtaaacgacagaagatttatgggaccaaattgagacactttatagttaagggaccaaactgagaaaataaaataa 36511424  T
Q  274 gttaagagactacgggatgtatt 296  Q
     ||||| ||||  ||||||||||    
T  36511425 attaagggactgggggatgtatt 36511447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 21277332 - 21277263
Alignment:
Q  14 gaaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccattt 83  Q
    ||||||||||||||||||||||| |||||||| |||||||||| ||||||| || |||||||||| ||||    
T  21277332 gaaaaaattaggtgtttgtggttcattataagttacaatagattcctccataattcaacggtctctattt 21277263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 38281115 - 38281058
Alignment:
Q  15 aaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaac 72  Q
    ||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||    
T  38281115 aaaaaattaggtggttgtggttcattataatctacaatagatccctccatgatccaac 38281058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 38 - 148
Target Start/End: Complemental strand, 40811512 - 40811403
Alignment:
Q  38 attataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataaaagatttaataaggtctatggtgga 137  Q
    |||||||| ||||||||||| |||| |||||||||||||| |||||          |||||||  |||||||||||||||||||||||||||||||||||    
T  40811512 attataagttacaatagatctctccttgatccaacggtcttcatttaaaaaaaat-atcaaacggttaaaaataaaagatttaataaggtctatggtgga 40811414  T
Q  138 ctatctataaa 148  Q
    | | |||||||    
T  40811413 ccacctataaa 40811403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 279
Target Start/End: Complemental strand, 14764371 - 14764246
Alignment:
Q  157 accttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-atagaagagttatggggccaaattgagacacctaatagttaagggacc 255  Q
    |||||| |||||||| |||||||||||| ||| ||||| |||| ||||||| | |||||| ||||| | ||||||| | |||| ||||| |||||||| |    
T  14764371 accttaaacatttaatgttaaaaactaacagagatgactaaaacagtaaacgacagaagacttatgagaccaaattaacacacttaataattaagggatc 14764272  T
Q  256 --actgaaaaaataaaataagttaag 279  Q
      ||| ||||||||||||||||||||    
T  14764271 aaactaaaaaaataaaataagttaag 14764246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 283
Target Start/End: Complemental strand, 26802085 - 26801956
Alignment:
Q  157 accttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaacata-gaagagttatggggccaaattgagacacctaatagttaagggacc 255  Q
    |||||||||||||||| ||||||| ||| ||||| ||||| | ||||||||  | ||||| ||||| | | ||||| | |||| |||||||||||||| |    
T  26802085 accttagacatttaagattaaaaagtaacagaaaggaccatattagtaaacggaggaagacttatgagactaaatttacacacttaatagttaagggatc 26801986  T
Q  256 --actgaaaaaataaaataagttaagagac 283  Q
      ||||||||||||||||||| ||||||||    
T  26801985 aaactgaaaaaataaaataagctaagagac 26801956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 296
Target Start/End: Complemental strand, 40811325 - 40811195
Alignment:
Q  169 taaggttaaaaactaatagaaatgaccaaaatagtaaacat-agaagagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaa 265  Q
    ||||||||||||||||  || |||||||||||| |||||   | ||||||||||||  ||||||||||||  |||||||||||||| |  ||||| ||||    
T  40811325 taaggttaaaaactaacggagatgaccaaaataataaacggcaaaagagttatgggatcaaattgagacatttaatagttaagggatcaaactgagaaaa 40811226  T
Q  266 taaaataagttaagagactacgggatgtatt 296  Q
    || ||||||||||| |||   ||||||||||    
T  40811225 tagaataagttaagggaccgagggatgtatt 40811195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 117 - 254
Target Start/End: Original strand, 2972942 - 2973080
Alignment:
Q  117 tttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaacatag-aaga 215  Q
    |||||||| || ||| || ||| ||||| |||||| ||  ||||||||||||||| |||||||||||| ||||| ||||| | ||||||||   | ||||    
T  2972942 tttaataaagtttatagtagaccatctacaaagttggtacaccttagacatttaaagttaaaaactaacagaaaggaccacactagtaaacggggtaaga 2973041  T
Q  216 gttatggggccaaattgagacacctaatagttaagggac 254  Q
     |||| || |||||||||||||| | ||| |||||||||    
T  2973042 cttataggaccaaattgagacactttataattaagggac 2973080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 296
Target Start/End: Original strand, 40812604 - 40812725
Alignment:
Q  176 aaaaactaatagaaatgaccaaaatagtaaacat-agaagagttatggggccaaattgagacacctaatagttaagggacca--ctgaaaaaataaaata 272  Q
    ||||||||| ||||| |||||||||||||||    |||||||||||    |||||||||||||| |||||||||||||||||  ||   |||||||||||    
T  40812604 aaaaactaacagaaaagaccaaaatagtaaatggcagaagagttatataaccaaattgagacacttaatagttaagggaccaaactaggaaaataaaata 40812703  T
Q  273 agttaagagactacgggatgtatt 296  Q
    ||||||| |||  |||||||||||    
T  40812704 agttaagggac--cgggatgtatt 40812725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 14765129 - 14765192
Alignment:
Q  217 ttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaa 278  Q
    ||||||| ||||||||| |||| ||||||||||||||||  ||||| |||||||||||||||||    
T  14765129 ttatgggaccaaattgacacacttaatagttaagggaccaaactgagaaaataaaataagttaa 14765192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 277
Target Start/End: Complemental strand, 19464721 - 19464619
Alignment:
Q  178 aaactaatagaaatgaccaaaatagtaaacat-agaagagttatggggccaaattgagacacctaatagttaagggacca--ctgaaaaaataaaataag 274  Q
    |||||||| || ||||||||||||||||||   |||||| || |||  ||||||||| |||| | ||| |||||||||||  ||||||||||||||||||    
T  19464721 aaactaatggagatgaccaaaatagtaaacggcagaagatttgtggaaccaaattgaaacactttataattaagggaccaaactgaaaaaataaaataag 19464622  T
Q  275 tta 277  Q
    |||    
T  19464621 tta 19464619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 279
Target Start/End: Original strand, 40110681 - 40110751
Alignment:
Q  211 gaagagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaag 279  Q
    ||||| ||||||| ||||||||| |||| |||||||||||||| |  ||||| ||||||||||||||||||    
T  40110681 gaagacttatgggaccaaattgacacacttaatagttaagggatcaaactgagaaaataaaataagttaag 40110751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 253
Target Start/End: Original strand, 49141416 - 49141567
Alignment:
Q  103 ttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatag 202  Q
    |||||| |||| || || |||||||||||||||||  | || ||||  | ||| ||||||||||||| | ||||||||||||  || ||||| ||||| |    
T  49141416 ttaaaattaaatgaatttataaggtctatggtggaacaactttaaatatggttcaccttagacatttgatgttaaaaactaacggagatgactaaaatgg 49141515  T
Q  203 taaac-atagaagagttatggggccaaattgagacacctaatagttaaggga 253  Q
    |||||   |||| | ||||||| |||| |||| |||| ||||||||||||||    
T  49141516 taaacggcagaaaaattatgggaccaatttgaaacacttaatagttaaggga 49141567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 256
Target Start/End: Original strand, 26056067 - 26056221
Alignment:
Q  103 ttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatag 202  Q
    |||||| ||||| |||||||| || |||||||| || | || ||||  | ||| || |||||| ||| | ||||||| ||||  || | |||||||||||    
T  26056067 ttaaaattaaaaaatttaatacggcctatggtgaaccacctttaaatatggttcactttagacttttgatgttaaaatctaacggagaggaccaaaatag 26056166  T
Q  203 taaac-atagaagagttatggggccaaattgagacacctaatagttaagggacca 256  Q
    ||||| | | |||| ||||||| |||||||||||||| | ||||||| |||||||    
T  26056167 taaacgacaaaagatttatgggaccaaattgagacactttatagttaggggacca 26056221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 256
Target Start/End: Original strand, 3979322 - 3979387
Alignment:
Q  192 gaccaaaatagtaaacat-agaagagttatggggccaaattgagacacctaatagttaagggacca 256  Q
    ||||||||||||||||   |||||| ||||||| |||||||||||||| | |||||||||||||||    
T  3979322 gaccaaaatagtaaacggcagaagaattatgggaccaaattgagacactttatagttaagggacca 3979387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 256
Target Start/End: Complemental strand, 9633958 - 9633817
Alignment:
Q  116 atttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-atagaag 214  Q
    ||||||||||||||||||||||| | || ||||  | ||| ||||||||||||| | ||||||||||||  || | || |||||  ||||||  | ||||    
T  9633958 atttaataaggtctatggtggaccacctttaaacatggttcaccttagacatttgatgttaaaaactaacggagaggatcaaaactgtaaacggttgaag 9633859  T
Q  215 agttatggggccaaattgagacacctaatagttaagggacca 256  Q
    | ||||    |||||||||||||| | |||||||||||||||    
T  9633858 atttatataaccaaattgagacactttatagttaagggacca 9633817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 256
Target Start/End: Complemental strand, 13641366 - 13641299
Alignment:
Q  190 atgaccaaaatagtaaacat-agaagagttatggggccaaattgagacacctaatagttaagggacca 256  Q
    ||||||||||||||||||   |||||| ||||||| |||||||||||||| | ||||||| |||||||    
T  13641366 atgaccaaaatagtaaacggcagaagatttatgggaccaaattgagacactttatagttaggggacca 13641299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 184
Target Start/End: Original strand, 13642491 - 13642558
Alignment:
Q  117 tttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaa 184  Q
    |||||||| || |||||| ||| | || ||||||| ||  ||||||||||||||||||||||||||||    
T  13642491 tttaataaagtttatggtagaccacctgtaaagttcgtccaccttagacatttaaggttaaaaactaa 13642558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 13642408 - 13642450
Alignment:
Q  29 ttgtggtttattataagctacaatagatccctccatgatccaa 71  Q
    |||||||| |||||||||||||||||||||||  |||||||||    
T  13642408 ttgtggttcattataagctacaatagatcccttaatgatccaa 13642450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 198
Target Start/End: Complemental strand, 44977404 - 44977322
Alignment:
Q  116 atttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaa 198  Q
    |||||||||||| || ||||||| | || ||||  | ||| ||||||||||||| | |||||||||||| ||| |||||||||    
T  44977404 atttaataaggtttacggtggaccacctttaaatatggttcaccttagacatttgatgttaaaaactaacagagatgaccaaa 44977322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 256
Target Start/End: Complemental strand, 3978151 - 3978086
Alignment:
Q  192 gaccaaaatagtaaac-atagaagagttatggggccaaattgagacacctaatagttaagggacca 256  Q
    |||||||||||||||| | |||||| |||||||  ||||||||||||| | |||||||| ||||||    
T  3978151 gaccaaaatagtaaacgacagaagaattatgggatcaaattgagacactttatagttaaaggacca 3978086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 30535603 - 30535652
Alignment:
Q  120 aataaggtctatggtggactatctataaagttagtttaccttagacattt 169  Q
    |||||||||||||||||||||||||||| ||| ||  ||| |||||||||    
T  30535603 aataaggtctatggtggactatctataatgttggtccaccatagacattt 30535652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 256
Target Start/End: Original strand, 50679850 - 50679895
Alignment:
Q  211 gaagagttatggggccaaattgagacacctaatagttaagggacca 256  Q
    ||||| ||||||| |||||||||||||| | |||||||||||||||    
T  50679850 gaagacttatgggaccaaattgagacactttatagttaagggacca 50679895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 184
Target Start/End: Original strand, 51218886 - 51218967
Alignment:
Q  103 ttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaa 184  Q
    |||||| ||||| |||||||||||  |||||||||| |||| ||||  | ||| || |||||||||| | ||||||||||||    
T  51218886 ttaaaattaaaaaatttaataaggcatatggtggaccatctttaaatatggttcactttagacatttgatgttaaaaactaa 51218967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 296
Target Start/End: Complemental strand, 24516421 - 24516334
Alignment:
Q  211 gaagagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaagagactacgggatgtatt 296  Q
    ||||| ||||| | ||||||||| |||| |||||||||||||| |  ||| | |||||||||||||||||| |||   ||||||||||    
T  24516421 gaagacttatgagaccaaattgacacacttaatagttaagggatcaaactcagaaaataaaataagttaagggaccgggggatgtatt 24516334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 7e-49; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 14 - 279
Target Start/End: Complemental strand, 14509493 - 14509226
Alignment:
Q  14 gaaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataaa 113  Q
    ||||||||||||||||||||||| |||| |||||||| |||||| || | ||||||||| ||||||| ||          |||||||  |||||||||||    
T  14509493 gaaaaaattaggtgtttgtggttcattacaagctacagtagatctctacttgatccaacagtctccaattaaaaaaaat-atcaaacggttaaaaataaa 14509395  T
Q  114 agatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-ataga 212  Q
    || |||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||| |||  || | |||||||||||||||| | |||    
T  14509394 aggtttaataaggtctatggtggaccacctataaagttggtttaccttagacatttaaggttaaaaattaacggagaggaccaaaatagtaaacgacaga 14509295  T
Q  213 agagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaag 279  Q
    ||| ||||||| || |||| | |||| | ||||||||||||||  | ||| ||||||||||||||||||    
T  14509294 agatttatgggaccgaattaaaacactttatagttaagggaccaaagtgagaaaataaaataagttaag 14509226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 20 - 279
Target Start/End: Original strand, 25570708 - 25570969
Alignment:
Q  20 attaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataaaagattt 119  Q
    ||||||||||||||||||||||||||  |||  || ||||||| |||||||| ||| | |||||         ||||||||| |||||||||||| ||||    
T  25570708 attaggtgtttgtggtttattataagacacagcag-tccctccgtgatccaatggttttcattttaaaaaaaagatcaaacctttaaaaataaaatattt 25570806  T
Q  120 aataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaacata-gaagagtt 218  Q
    ||||||||||||||||||| | |||||||||| ||| |||||||||||||||| |||||||||||  |||| ||| |||||||||||   | ||||| ||    
T  25570807 aataaggtctatggtggaccacctataaagttggttcaccttagacatttaagtttaaaaactaacggaaaggactaaaatagtaaatggaggaagactt 25570906  T
Q  219 atggggccaaattgagacacctaatagttaagggac--cactgaaaaaataaaataagttaag 279  Q
    ||||   |||||||| |||| |||||||||||||||  |||||| ||||||||||||||||||    
T  25570907 atggaatcaaattgaaacacttaatagttaagggactacactgagaaaataaaataagttaag 25570969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 7037249 - 7037010
Alignment:
Q  15 aaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataaaa 114  Q
    |||||||||||||| |||||||||| |||| |||||||||||| ||||||||||||||||||||| |||         ||||||||  |||||||| |||    
T  7037249 aaaaaattaggtgtgtgtggtttataataacctacaatagatctctccatgatccaacggtctcc-ttttaaaaaaaagatcaaacggttaaaaatgaaa 7037151  T
Q  115 gatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-atagaa 213  Q
    ||||||||||||| || ||||||  | ||||||||||  || |||||||| |||||||||||||||  ||  |||||||||||||| ||||||   ||||    
T  7037150 gatttaataaggtttacggtggatcacctataaagttgattcaccttagatatttaaggttaaaaataaacggaaatgaccaaaatggtaaacggcagaa 7037051  T
Q  214 gagttatggggccaaattgagacacctaatagttaagggac 254  Q
    || ||||||| ||||||||| |||| | |||||||||||||    
T  7037050 gacttatgggaccaaattgaaacactttatagttaagggac 7037010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 15 - 256
Target Start/End: Original strand, 37868872 - 37869114
Alignment:
Q  15 aaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataaaa 114  Q
    ||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||  ||||| |||         ||||||||  |||||| ||       
T  37868872 aaaaaattaggtgtttgtgattcattataagctacaatagatcccttcatgatccaacaatctccgtttaacaaaaaagatcaaacggttaaaagtatgt 37868971  T
Q  115 gatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-atagaa 213  Q
    ||||||||||||||||| |||||| | |||||||||| | | ||||||||||||||||||||||||| ||  || | ||||||||  |||||| | ||||    
T  37868972 gatttaataaggtctattgtggaccacctataaagttggctcaccttagacatttaaggttaaaaacaaacggagaagaccaaaaaggtaaacgacagaa 37869071  T
Q  214 gagttatggggccaaattgagacacctaatagttaagggacca 256  Q
    || ||||| | | |||||||||||| | |||||||||||||||    
T  37869072 gacttatgagactaaattgagacactttatagttaagggacca 37869114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 14 - 181
Target Start/End: Complemental strand, 10367524 - 10367357
Alignment:
Q  14 gaaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataaa 113  Q
    |||||||||||||||||||| || ||||||||||||||||||| ||| |||||||||||||||||| |||         ||||||||  |||||| ||      
T  10367524 gaaaaaattaggtgtttgtgattcattataagctacaatagattccttcatgatccaacggtctccgtttaacaaaaaagatcaaacggttaaaagtatg 10367425  T
Q  114 agatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaac 181  Q
     ||||||||||||||||| |||||| | |||||||||| ||| |||||||||||||||||||||||||    
T  10367424 tgatttaataaggtctattgtggaccacctataaagttggttcaccttagacatttaaggttaaaaac 10367357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 21 - 200
Target Start/End: Original strand, 11575326 - 11575503
Alignment:
Q  21 ttaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataaaagattta 120  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||         ||||||||  ||| |||| |||||||||    
T  11575326 ttaggtatttgtggtttattataagctacaatagatcccttcatgatccaactgtctccattt--aaaaaaagatcaaacggttagaaatgaaagattta 11575423  T
Q  121 ataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaat 200  Q
    ||||||| |||||||||  | ||||||||||  || ||||||||||||||||||||||||| ||  |||| |||||||||    
T  11575424 ataaggtttatggtggatcacctataaagttgattcaccttagacatttaaggttaaaaacaaacggaaaggaccaaaat 11575503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 12959523 - 12959700
Alignment:
Q  1 gaagaagaaataagaaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaac 100  Q
    |||||||| | | |||||||||||||||||||| || |||||||| |||||||||||||| ||||||||||| |||||| |||         |||||||     
T  12959523 gaagaagatagaggaaaaaattaggtgtttgtgattcattataaggtacaatagatcccttcatgatccaacagtctccgtttaacaaaaaagatcaaaa 12959622  T
Q  101 ccttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaa 178  Q
      |||||||||   ||||||||||||||||| |||||| | |||||||||| ||| ||||||||||||||||||||||    
T  12959623 ggttaaaaatatgtgatttaataaggtctattgtggaccacctataaagttggttcaccttagacatttaaggttaaa 12959700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 93 - 279
Target Start/End: Original strand, 7490107 - 7490294
Alignment:
Q  93 gatcaaacccttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatg 192  Q
    ||||||||| |||||||  ||||||| || ||||| ||||||||   |  ||||||||| ||| ||||||||||||||||||||||||||||  || | |    
T  7490107 gatcaaaccgttaaaaa--aaagattcaacaaggtttatggtgggtcacttataaagtttgttcaccttagacatttaaggttaaaaactaacggataag 7490204  T
Q  193 accaaaatagtaaac-atagaagagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaag 279  Q
    ||||||||||||||| ||| |||| ||||||| |||||||||||||  | ||| |||| |||||  ||||| ||||||||||||||||||    
T  7490205 accaaaatagtaaacaataaaagatttatgggaccaaattgagacattttataattaaaggaccaaactgagaaaataaaataagttaag 7490294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 35799795 - 35799556
Alignment:
Q  15 aaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataaaa 114  Q
    ||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||  |||  ||||         ||||||||  |||||| || ||    
T  35799795 aaaaaattaggtggttgtggtttattataaactacaat-gatccctccatgatccaacaatcttaattttaaaaaaaagatcaaacggttaaaattataa 35799697  T
Q  115 gatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-atagaa 213  Q
     ||||||||| ||||||||| ||| |  |||||||||  || ||||||||||||||||||||||| ||||  || | |||||||   ||||||   ||||    
T  35799696 catttaataaagtctatggtagaccacttataaagttgattcaccttagacatttaaggttaaaagctaacggagaggaccaaagaggtaaacggaagaa 35799597  T
Q  214 gagttatggggccaaattgagacacctaatagttaagggac 254  Q
     ||||||| | |||||||||||||| | ||||||| |||||    
T  35799596 aagttatgagaccaaattgagacactttatagttaggggac 35799556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 124 - 254
Target Start/End: Complemental strand, 4829640 - 4829509
Alignment:
Q  124 aggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-atagaagagttatgg 222  Q
    ||||||||||||||| | |||||||||| |||||||||||| ||||||||||||| ||||| ||| | |||||||||||||||| | | |||| |||||     
T  4829640 aggtctatggtggaccacctataaagttggtttaccttagatatttaaggttaaacactaacagagaggaccaaaatagtaaacgacataagatttatga 4829541  T
Q  223 ggccaaattgagacacctaatagttaagggac 254  Q
    |  ||||||||||||  | |||||||||||||    
T  4829540 gatcaaattgagacattttatagttaagggac 4829509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 103 - 256
Target Start/End: Complemental strand, 12853082 - 12852928
Alignment:
Q  103 ttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatag 202  Q
    |||||| | ||| |||||||| ||||||||||| || | || ||||  | ||| ||||||||  ||| | ||||||| ||||  || |||||||||||||    
T  12853082 ttaaaattcaaaaatttaatacggtctatggtgaaccacctttaaatatggttcaccttagatttttgatgttaaaatctaacggagatgaccaaaatag 12852983  T
Q  203 taaac-atagaagagttatggggccaaattgagacacctaatagttaagggacca 256  Q
    ||||| |||||||| ||||||| |||||||||||||| | ||||||| |||||||    
T  12852982 taaacgatagaagatttatgggaccaaattgagacactttatagttaggggacca 12852928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 103 - 235
Target Start/End: Original strand, 28109789 - 28109922
Alignment:
Q  103 ttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatag 202  Q
    |||||| |||| || || ||||| || ||||||||| | ||| |||||| ||| |||||||||||||||||||||||| |||  || | ||||||||| |    
T  28109789 ttaaaattaaatgaatttataagatccatggtggaccacctacaaagttggttcaccttagacatttaaggttaaaaaataacggagaggaccaaaatgg 28109888  T
Q  203 taaac-atagaagagttatggggccaaattgaga 235  Q
    ||||| | |||| ||||||||| |||||||||||    
T  28109889 taaactacagaaaagttatgggaccaaattgaga 28109922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 42249621 - 42249838
Alignment:
Q  19 aattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataaaagatt 118  Q
    ||||||||| |||| ||| ||||||||||||||||||| ||||| |||||||||  ||| |||||         ||||||||  |||||| ||||| |||    
T  42249621 aattaggtggttgttgttcattataagctacaatagattcctccgtgatccaacaatcttcattt-ttaaaaaagatcaaacggttaaaattaaaaaatt 42249719  T
Q  119 taataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-atagaagagt 217  Q
    ||||||  |||||||| || |   ||| ||||| ||| |||||||||||||||||||||||| ||| |||   ||||| ||| ||||||  |||||||||    
T  42249720 taataaaatctatggtaga-tccttat-aagttggttcaccttagacatttaaggttaaaaaataacagaggagaccacaattgtaaacggtagaagagt 42249817  T
Q  218 tatggggccaaattgagacac 238  Q
    ||| || | ||||||||||||    
T  42249818 tataggactaaattgagacac 42249838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 296
Target Start/End: Original strand, 15850598 - 15850775
Alignment:
Q  122 taaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaat-gaccaaaatagtaaaca-tagaagagtta 219  Q
    |||| |||||||||||| | |||||| ||| ||| |||||||||||||| |||||||||||||  ||| | |||||||||||  ||||  ||||||||||    
T  15850598 taagatctatggtggaccacctataatgttggttcaccttagacatttagggttaaaaactaa-cgaagtggaccaaaataggtaacagcagaagagtta 15850696  T
Q  220 tggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaagagactacgggatgtatt 296  Q
    || | ||||||||| |||  | |||||||| ||| |  ||| | |||||||||||||||||| |||   ||||||||||    
T  15850697 tgagaccaaattgaaacattttatagttaaaggagcaaactaagaaaataaaataagttaagggaccgggggatgtatt 15850775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 190 - 278
Target Start/End: Original strand, 14510516 - 14510607
Alignment:
Q  190 atgaccaaaatagtaaacat-agaagagttatggggccaaattgagacacctaatagttaagggac--cactgaaaaaataaaataagttaa 278  Q
    ||||| ||||||||||||   ||||||||||| || |||||||||||||| |||||||||||||||   ||| | |||||||||||||||||    
T  14510516 atgactaaaatagtaaacggcagaagagttataggaccaaattgagacacttaatagttaagggactaaactaagaaaataaaataagttaa 14510607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 278
Target Start/End: Original strand, 3533630 - 3533724
Alignment:
Q  187 gaaatgaccaaaatagtaaac-atagaagagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaa 278  Q
    ||||||| | ||||||||||| | | |||| ||||| | ||||||||| |||| ||||||||||||||||  ||| |||||||||||||||||||    
T  3533630 gaaatgatcgaaatagtaaacgacaaaagatttatgagaccaaattgacacacttaatagttaagggaccaaactaaaaaaataaaataagttaa 3533724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 279
Target Start/End: Original strand, 7983628 - 7983794
Alignment:
Q  116 atttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-atagaag 214  Q
    |||||||||| |||||||||||| | || ||||  | ||| ||||||||||||| | |||||||| | |   ||| ||| |||| |||||||  ||||||    
T  7983628 atttaataagatctatggtggaccacctttaaacatggttcaccttagacatttgatgttaaaaattgacgaaaaggactaaaacagtaaacggtagaag 7983727  T
Q  215 agttatggggccaaattgagacacctaatagttaaggga--ccactgaaaaaataaaataagttaag 279  Q
    | |||| || ||||||||| |||| |||||||||||| |    ||||| ||||||||||||||||||    
T  7983728 acttataggaccaaattgacacacttaatagttaaggaattaaactgagaaaataaaataagttaag 7983794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 279
Target Start/End: Complemental strand, 3532336 - 3532211
Alignment:
Q  157 accttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaa-catagaagagttatggggccaaattgagacacctaatagttaagggacc 255  Q
    |||||| |||||||| ||||||||  || ||| ||||| |||||||||||  | | |||| ||||| | ||||||||| |||| ||||| |||||||| |    
T  3532336 accttaaacatttaatgttaaaaatcaacagagatgactaaaatagtaaatgacaaaagacttatgtgaccaaattgacacacttaataattaagggatc 3532237  T
Q  256 --actgaaaaaataaaataagttaag 279  Q
      |||||||||||||||||| |||||    
T  3532236 aaactgaaaaaataaaataaattaag 3532211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 202
Target Start/End: Complemental strand, 8537194 - 8537109
Alignment:
Q  117 tttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatag 202  Q
    |||||||| |||||||||| || |  || |||||| ||  | ||||||||||||||||||||||||||  || |||||||||||||    
T  8537194 tttaataaagtctatggtgaaccacttaaaaagttggtacatcttagacatttaaggttaaaaactaacggagatgaccaaaatag 8537109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 279
Target Start/End: Complemental strand, 15850185 - 15850129
Alignment:
Q  225 ccaaattgagacacctaatagttaagggacca--ctgaaaaaataaaataagttaag 279  Q
    |||||||||||||| | ||||||||| |||||  |||||||||||||||||||||||    
T  15850185 ccaaattgagacactttatagttaagagaccaaactgaaaaaataaaataagttaag 15850129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 147
Target Start/End: Original strand, 28562740 - 28562771
Alignment:
Q  116 atttaataaggtctatggtggactatctataa 147  Q
    ||||||||||||||||||||||||||||||||    
T  28562740 atttaataaggtctatggtggactatctataa 28562771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 12854132 - 12854178
Alignment:
Q  210 agaagagttatggggccaaattgagacacctaatagttaagggacca 256  Q
    |||||| ||||||| |||||||||||||| | |||||||||||||||    
T  12854132 agaagatttatgggaccaaattgagacactttatagttaagggacca 12854178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 278
Target Start/End: Complemental strand, 25569856 - 25569787
Alignment:
Q  211 gaagagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaa 278  Q
    ||||| ||||| | ||||||||| |||  ||||||||||||||||  ||| |||||||||||||||||||    
T  25569856 gaagacttatgtgaccaaattgacacaagtaatagttaagggaccaaactaaaaaaataaaataagttaa 25569787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 279
Target Start/End: Complemental strand, 32614527 - 32614402
Alignment:
Q  157 accttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-atagaagagttatggggccaaattgagacacctaatagttaagggacc 255  Q
    ||||||||||| ||||||||||||| ||  || | ||| ||||| |||||| | | |||||||||||  | ||||||| |||| | ||||||| ||||||    
T  32614527 accttagacatataaggttaaaaacaaacggagaggactaaaatggtaaacgacataagagttatggaactaaattgaaacacgtgatagttaggggacc 32614428  T
Q  256 --actgaaaaaataaaataagttaag 279  Q
      | ||||||||||||||||| ||||    
T  32614427 aaaatgaaaaaataaaataagctaag 32614402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 5727503 - 5727459
Alignment:
Q  157 accttagacatttaaggttaaaaactaatagaaatgaccaaaata 201  Q
    |||||| ||||||||| ||||||||||||| | ||||||||||||    
T  5727503 accttaaacatttaagcttaaaaactaataaagatgaccaaaata 5727459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 7038366 - 7038406
Alignment:
Q  216 gttatggggccaaattgagacacctaatagttaagggacca 256  Q
    |||||||| |||||||||||||| | |||||||||||||||    
T  7038366 gttatgggaccaaattgagacactttatagttaagggacca 7038406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 7e-43; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 14 - 256
Target Start/End: Complemental strand, 31738648 - 31738405
Alignment:
Q  14 gaaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataaa 113  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||          ||||||   ||||||||       
T  31738648 gaaaaaattaggtgtttgtggttcattataagctacaatagatctctccatgatccaacggtctccattttaaaaaaaatatcaaatggttaaaaatttg 31738549  T
Q  114 agatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaa-cataga 212  Q
     ||||||||||  ||||||||||||  ||||||||||| ||| || |||||||||||||||||||||||||  || | ||||||||| ||||| |  |||    
T  31738548 tgatttaataaaatctatggtggaccgtctataaagttggttcacattagacatttaaggttaaaaactaacggagaggaccaaaatggtaaaccgcaga 31738449  T
Q  213 agagttatggggccaaattgagacacctaatagttaagggacca 256  Q
    ||| ||||||| ||||||||| |||| | ||||||| |||||||    
T  31738448 agacttatgggaccaaattgaaacactttatagttaggggacca 31738405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 113 - 284
Target Start/End: Original strand, 14328704 - 14328878
Alignment:
Q  113 aagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-atag 211  Q
    |||||||||||||||||||||||||| | |||||||||| ||| |||||||||||||||||||||||| |||  || | |||||||||||||||| | |     
T  14328704 aagatttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaaaagtaacggagaggaccaaaatagtaaacgacaa 14328803  T
Q  212 aagagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaagagact 284  Q
    |||| ||||| | ||||||| |||||| |||||||||||||| |  ||||| |||||||||||||||||| ||||    
T  14328804 aagaattatgagaccaaattaagacacttaatagttaagggatcaaactgagaaaataaaataagttaagggact 14328878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 113 - 284
Target Start/End: Original strand, 14421714 - 14421888
Alignment:
Q  113 aagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-atag 211  Q
    |||||||||||||||||||||||||| | |||||||||| ||| |||||||||||||||||||||||| |||  || | |||||||||||||||| | |     
T  14421714 aagatttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaaaagtaacggagaggaccaaaatagtaaacgacaa 14421813  T
Q  212 aagagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaagagact 284  Q
    |||| ||||| | ||||||| |||||| |||||||||||||| |  ||||| |||||||||||||||||| ||||    
T  14421814 aagaattatgagaccaaattaagacacttaatagttaagggatcaaactgagaaaataaaataagttaagggact 14421888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 15 - 238
Target Start/End: Original strand, 293474 - 293696
Alignment:
Q  15 aaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataaaa 114  Q
    |||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||         |||||||   |||||||||       
T  293474 aaaaaaataggtgtttgtggttcattataagctacaatagatctctccatgatccaacgatctccattt--aaaaaaagatcaaatggttaaaaatatgt 293571  T
Q  115 gatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-atagaa 213  Q
     ||||||||||||||||||||||| | |||||||||| ||| ||||||||||||||||||||||||  ||  || | ||||||||| |||||| | ||||    
T  293572 tatttaataaggtctatggtggaccacctataaagttggttcaccttagacatttaaggttaaaaataaacggagaggaccaaaatggtaaacgacagaa 293671  T
Q  214 gagttatggggccaaattgagacac 238  Q
    || ||||| | ||||||||| ||||    
T  293672 gacttatgagaccaaattgaaacac 293696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 15 - 279
Target Start/End: Complemental strand, 9927889 - 9927623
Alignment:
Q  15 aaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaaccc-ttaaaaataaa 113  Q
    ||||||||||||| |||| ||| |||||| |||||||||||| |||||||||||||||  ||| |||||          |||||| |  |||||| ||||    
T  9927889 aaaaaattaggtggttgtagttcattatatgctacaatagatacctccatgatccaacaatcttcatttaagaaataaaatcaaaacggttaaaattaaa 9927790  T
Q  114 agatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-ataga 212  Q
    | || |||||| |||| |||| ||| | ||| |||||| ||| | |||||||||||||||||||||| |||  || |||||||||||||||||| || ||    
T  9927789 aaatgtaataaagtct-tggtagaccacctacaaagttggttcatcttagacatttaaggttaaaaattaacggagatgaccaaaatagtaaacgattga 9927691  T
Q  213 agagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaag 279  Q
    ||  ||||||| |||||||||||||| | ||||||| ||||||  ||| |||| | |||||||||||||    
T  9927690 ag-tttatgggaccaaattgagacactttatagttaggggaccaaactaaaaacaaaaaataagttaag 9927623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 27440006 - 27440230
Alignment:
Q  15 aaaaaattaggtgtttgtggtttattataagctacaatagatccc--tccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataa 112  Q
    ||||||| ||||| ||||||||||||||||||||||  |||||||  || ||||||||||  | | |||||         ||||||||  |||||| |||    
T  27440006 aaaaaatgaggtgattgtggtttattataagctacagaagatccccctctatgatccaacaattttcattttaaaaaaa-gatcaaacggttaaaattaa 27440104  T
Q  113 aagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-atag 211  Q
    || ||||||||| || |||||| ||| | ||| ||||||| || ||||||||||||||| |||||||| |||  || | ||||||||||||||||   ||    
T  27440105 aaaatttaataaagtttatggtagaccacctacaaagttaattcaccttagacatttaaagttaaaaattaacggagaggaccaaaatagtaaacggaag 27440204  T
Q  212 aagagttatggggccaaattgagaca 237  Q
    |||| ||||||| |||||||||||||    
T  27440205 aagatttatgggaccaaattgagaca 27440230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 233
Target Start/End: Complemental strand, 16268824 - 16268606
Alignment:
Q  15 aaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataaaa 114  Q
    ||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||  ||| || ||          |||||||   ||||| |||||    
T  16268824 aaaaaattaggtggttgtggttcattataagctaaaatagatccctccatgatccaacaatcttca-ttcaaagaaaaaatcaaacggataaaattaaaa 16268726  T
Q  115 gatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaacata-gaa 213  Q
     ||||||||| ||||||||| ||| |  || |||||| ||| || |||||||||||||||||| ||||||   | | ||||| | ||||||||||| |||    
T  16268725 aatttaataaagtctatggtagaccacatacaaagttggttcacgttagacatttaaggttaataactaactaagaggaccacattagtaaacataggaa 16268626  T
Q  214 gagttatggggccaaattga 233  Q
    || |||||||  ||||||||    
T  16268625 gacttatgggaacaaattga 16268606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 14327258 - 14327316
Alignment:
Q  15 aaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacg 73  Q
    |||||||||||||||||||||| ||||||||||||| || ||| |||| ||||||||||    
T  14327258 aaaaaattaggtgtttgtggttcattataagctacagtatatctctccttgatccaacg 14327316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 14420268 - 14420326
Alignment:
Q  15 aaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacg 73  Q
    |||||||||||||||||||||| ||||||||||||| || ||| |||| ||||||||||    
T  14420268 aaaaaattaggtgtttgtggttcattataagctacagtatatctctccttgatccaacg 14420326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 279
Target Start/End: Complemental strand, 14326265 - 14326170
Alignment:
Q  187 gaaatgaccaaaatagtaaac-atagaagagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaag 279  Q
    |||| ||||| |||||||||| |||||||| ||||||| |||||||||||| |  |||| |||||||| |  ||||| ||||||||||||||||||    
T  14326265 gaaaggaccacaatagtaaacgatagaagaattatgggaccaaattgagacgctcaataattaagggatcaaactgagaaaataaaataagttaag 14326170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 279
Target Start/End: Complemental strand, 14419275 - 14419180
Alignment:
Q  187 gaaatgaccaaaatagtaaac-atagaagagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaag 279  Q
    |||| ||||| |||||||||| |||||||| ||||||| |||||||||||| |  |||| |||||||| |  ||||| ||||||||||||||||||    
T  14419275 gaaaggaccacaatagtaaacgatagaagaattatgggaccaaattgagacgctcaataattaagggatcaaactgagaaaataaaataagttaag 14419180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 296
Target Start/End: Complemental strand, 13800117 - 13800031
Alignment:
Q  212 aagagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaagagactacgggatgtatt 296  Q
    |||| ||||||| ||||||||| |||  ||||||||||||||||  ||||| |||||||||||||||||| |||   ||||||||||    
T  13800117 aagatttatgggaccaaattgacacaattaatagttaagggaccaaactgagaaaataaaataagttaagggacctagggatgtatt 13800031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 199
Target Start/End: Original strand, 18139407 - 18139503
Alignment:
Q  103 ttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaa 199  Q
    |||||| | ||| ||||||||| ||||||||||||  |||| ||||  | ||| ||||||||||||| | ||||||||||||| || | ||||||||    
T  18139407 ttaaaatttaaaaatttaataatgtctatggtggatcatctttaaacatggttcaccttagacatttgatgttaaaaactaatggagaggaccaaaa 18139503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 184
Target Start/End: Complemental strand, 22298786 - 22298719
Alignment:
Q  117 tttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaa 184  Q
    |||||||| || |||||| ||| | || ||||||| ||  ||||||||||||||||||||||||||||    
T  22298786 tttaataaagtttatggtagaccacctgtaaagttcgtccaccttagacatttaaggttaaaaactaa 22298719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 256
Target Start/End: Original strand, 22299910 - 22299977
Alignment:
Q  190 atgaccaaaatagtaaacat-agaagagttatggggccaaattgagacacctaatagttaagggacca 256  Q
    ||||||||||||||||||   |||||| ||||||| |||||||||||||| | ||||||| |||||||    
T  22299910 atgaccaaaatagtaaacggcagaagatttatgggaccaaattgagacactttatagttaggggacca 22299977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 205
Target Start/End: Complemental strand, 2130955 - 2130877
Alignment:
Q  127 tctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaa 205  Q
    ||||||||| || | |||||||| | ||| |||||||| ||||||||||||| |||||  || | ||||||||||||||    
T  2130955 tctatggtgaaccacctataaaggtggttcaccttagatatttaaggttaaatactaagggagaggaccaaaatagtaa 2130877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 22298869 - 22298827
Alignment:
Q  29 ttgtggtttattataagctacaatagatccctccatgatccaa 71  Q
    |||||||| |||||||||||||||||||||||  |||||||||    
T  22298869 ttgtggttcattataagctacaatagatcccttaatgatccaa 22298827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 278
Target Start/End: Original strand, 31740302 - 31740370
Alignment:
Q  212 aagagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaa 278  Q
    |||| ||||||| |||||||||||||| | ||||||||||||||  | |||||| | ||||||||||||    
T  31740302 aagatttatgggaccaaattgagacactttatagttaagggaccaaattgaaaacaaaaaataagttaa 31740370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 182
Target Start/End: Complemental strand, 12773247 - 12773187
Alignment:
Q  122 taaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaact 182  Q
    |||||||||||||||||  |||| || |||  |  ||||||||||||||||||||||||||    
T  12773247 taaggtctatggtggacagtctacaatgttgatccaccttagacatttaaggttaaaaact 12773187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 178
Target Start/End: Complemental strand, 15728914 - 15728854
Alignment:
Q  118 ttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaa 178  Q
    |||||| ||||||||||||||||||||||| ||| ||  ||| |||| |||| ||||||||    
T  15728914 ttaatagggtctatggtggactatctataatgttggtccaccatagatatttgaggttaaa 15728854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 15 - 207
Target Start/End: Complemental strand, 16228 - 16037
Alignment:
Q  15 aaaaaattaggtgtttgtggtttattataagctacaatagatccctccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataaaa 114  Q
    |||||||||||||||||||||| |||| ||||||||||||||| || | ||||||||| ||||||| ||          |||||||  ||||||||||||    
T  16228 aaaaaattaggtgtttgtggttcattacaagctacaatagatctctacttgatccaacagtctccaatttaaaaaaat-atcaaacggttaaaaataaaa 16130  T
Q  115 gatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac 207  Q
    | |||||||||||||||||||||| |||||||||||| ||| | ||||||||||||||||||||||||||  || | ||| ||||||||||||    
T  16129 ggtttaataaggtctatggtggaccatctataaagttggttcatcttagacatttaaggttaaaaactaacggagaggactaaaatagtaaac 16037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 278
Target Start/End: Original strand, 17159 - 17258
Alignment:
Q  182 taatagaaatgaccaaaatagtaaac-atagaagagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaa 278  Q
    ||||||| | ||| |||||||||||  | ||||||||||| ||   |||||||||||| ||||||||||||||||  |||||||||||||||||||||||    
T  17159 taatagagaggactaaaatagtaaatgacagaagagttattggattaaattgagacacttaatagttaagggaccaaactgaaaaaataaaataagttaa 17258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 237
Target Start/End: Complemental strand, 47355 - 47131
Alignment:
Q  15 aaaaaattaggtgtttgtggtttattataagctacaatagatccc--tccatgatccaacggtctccatttnnnnnnnnngatcaaacccttaaaaataa 112  Q
    ||||||| ||||| ||||||||||||||||||||||  |||||||  || ||||||||||  | | |||||         ||||||||  |||||| |||    
T  47355 aaaaaatgaggtgattgtggtttattataagctacagaagatccccctctatgatccaacaattttcattttaaaaaaa-gatcaaacggttaaaattaa 47257  T
Q  113 aagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatagtaaac-atag 211  Q
    || ||||||||| || |||||| ||| | ||| ||||||| || ||||||||||||||| |||||||| |||  || | ||||||||||||||||   ||    
T  47256 aaaatttaataaagtttatggtagaccacctacaaagttaattcaccttagacatttaaagttaaaaattaacggagaggaccaaaatagtaaacggaag 47157  T
Q  212 aagagttatggggccaaattgagaca 237  Q
    |||| ||||||| |||||||||||||    
T  47156 aagatttatgggaccaaattgagaca 47131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 256
Target Start/End: Original strand, 56620 - 56774
Alignment:
Q  103 ttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatag 202  Q
    |||||| | ||| |||||||||||||| |||||||| |||| ||||  |||||| ||||||| |||| | |||||||||||||||| | || | ||| ||    
T  56620 ttaaaatttaaaaatttaataaggtctttggtggaccatctttaaacatagtttcccttagatatttgatgttaaaaactaatagagaggatctaaacag 56719  T
Q  203 taaac-atagaagagttatggggccaaattgagacacctaatagttaagggacca 256  Q
    |||||   |||||| |||| || |||||||||||||| | ||| ||| |||||||    
T  56720 taaacggcagaagatttataggaccaaattgagacactttataattaggggacca 56774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 279
Target Start/End: Original strand, 42355 - 42445
Alignment:
Q  192 gaccaaaatagtaaac-atagaagagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaag 279  Q
    |||||||||||||||| | |||||| |||||||  |||||||| |||| |||||||||||||| |  ||||| ||||||||||||||||||    
T  42355 gaccaaaatagtaaacgacagaagatttatgggatcaaattgatacacgtaatagttaagggatcaaactgagaaaataaaataagttaag 42445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 256
Target Start/End: Original strand, 2258 - 2339
Alignment:
Q  176 aaaaactaatagaaatgaccaaaatagtaaaca-tagaagagttatggggccaaattgagacacctaatagttaagggacca 256  Q
    |||||||||  |||| ||||||||||||||||| ||||||||||||||| ||||||||| |||| | ||| ||| |||||||    
T  2258 aaaaactaacggaaaggaccaaaatagtaaacagtagaagagttatgggaccaaattgaaacactttataattaggggacca 2339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 1488 - 1440
Alignment:
Q  19 aattaggtgtttgtggtttattataagctacaatagatccctccatgat 67  Q
    ||||||||| |||| ||| ||||||||||||||||||||||||| ||||    
T  1488 aattaggtggttgttgttcattataagctacaatagatccctccgtgat 1440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1974 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1974
Description:

Target: scaffold1974; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 256
Target Start/End: Original strand, 548 - 702
Alignment:
Q  103 ttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatag 202  Q
    |||||| || || |||||||||| |||| |||| || |||| ||||  | ||| ||||||||  ||| | ||||||||||||  || ||||||||||| |    
T  548 ttaaaattagaaaatttaataagatctacggtgaaccatctttaaatatggttcaccttagattttttatgttaaaaactaacggagatgaccaaaatgg 647  T
Q  203 taaac-atagaagagttatggggccaaattgagacacctaatagttaagggacca 256  Q
    |||||   |||||| ||||||| | |||||||||||| | ||||||| |||||||    
T  648 taaacggcagaagatttatgggactaaattgagacactttatagttaggggacca 702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1878 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1878
Description:

Target: scaffold1878; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 256
Target Start/End: Complemental strand, 726 - 572
Alignment:
Q  103 ttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatag 202  Q
    |||||| || || |||||||||| |||| |||| || |||| ||||  | ||| ||||||||  ||| | ||||||||||||  || ||||||||||| |    
T  726 ttaaaattagaaaatttaataagatctacggtgaaccatctttaaatatggttcaccttagattttttatgttaaaaactaacggagatgaccaaaatgg 627  T
Q  203 taaac-atagaagagttatggggccaaattgagacacctaatagttaagggacca 256  Q
    |||||   |||||| ||||||| | |||||||||||| | ||||||| |||||||    
T  626 taaacggcagaagatttatgggactaaattgagacactttatagttaggggacca 572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 256
Target Start/End: Original strand, 9398 - 9552
Alignment:
Q  103 ttaaaaataaaagatttaataaggtctatggtggactatctataaagttagtttaccttagacatttaaggttaaaaactaatagaaatgaccaaaatag 202  Q
    |||||| || || |||||||||| |||| |||| || |||| ||||  | ||| ||||||||  ||| | ||||||||||||  || ||||||||||| |    
T  9398 ttaaaattagaaaatttaataagatctacggtgaaccatctttaaatatggttcaccttagattttttatgttaaaaactaacggagatgaccaaaatgg 9497  T
Q  203 taaac-atagaagagttatggggccaaattgagacacctaatagttaagggacca 256  Q
    |||||   |||||| ||||||| | |||||||||||| | ||||||| |||||||    
T  9498 taaacggcagaagatttatgggactaaattgagacactttatagttaggggacca 9552  T

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Target: scaffold0166 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 4182 - 4124
Alignment:
Q  93 gatcaaacccttaaaaataaaagatttaataaggtctatggtggactatctataaagtt 151  Q
    ||||||||  ||||||||||||||||||||| ||| |||||||||| | ||||||||||    
T  4182 gatcaaacagttaaaaataaaagatttaatacggtttatggtggaccacctataaagtt 4124  T

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Target: scaffold0166; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 296
Target Start/End: Original strand, 4262 - 4333
Alignment:
Q  226 caaattgagacacctaatagttaagggac--cactgaaaaaataaaataagttaagagactacgggatgtatt 296  Q
    ||||||||||||| ||||| |||||||||   ||| | |||||||||||||||||| ||||| ||||||||||    
T  4262 caaattgagacacttaataattaagggactaaactaagaaaataaaataagttaagggacta-gggatgtatt 4333  T

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Target: scaffold0046 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 279
Target Start/End: Complemental strand, 23494 - 23423
Alignment:
Q  210 agaagagttatggggccaaattgagacacctaatagttaagggacc--actgaaaaaataaaataagttaag 279  Q
    |||||||||||||| |||||||||||||  | ||||||| ||||||  ||||||||   |||||||||||||    
T  23494 agaagagttatgggaccaaattgagacattttatagttaggggaccaaactgaaaaccaaaaataagttaag 23423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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