View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1725_low_10 (Length: 236)
Name: NF1725_low_10
Description: NF1725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1725_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 38882724 - 38882944
Alignment:
| Q |
1 |
tcgataacatgtaataataatagtatttcacttcagaagtgttccttacaaaccaaaatcatggtttcaaaaggtttatattcaagtccgttaatgcaat |
100 |
Q |
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| T |
38882724 |
tcgataacatgtaataataataatatttcacttcagaagtgttccttacaaaccaaaatcatggtttcaaaaggtttatattcaagtccgttaatgcaat |
38882823 |
T |
|
| Q |
101 |
gcatgtttagattgcattatttgagtttattgactgacttaaattttgtgtgactgtctgtttatgagaagttatgaaaacagattatcaaattgttcat |
200 |
Q |
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||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38882824 |
gcacgtttagattgcattatttgagcttatcgactgacttaaattttgtgtgactgtctgtttatgagaagttatgaaaacagattatcaaattgttcat |
38882923 |
T |
|
| Q |
201 |
aaggtgttttcaacttatttt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
38882924 |
aaggtgttttcaacttatttt |
38882944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 49202737 - 49202683
Alignment:
| Q |
167 |
agaagttatgaaaacagattatcaaattgttcataaggtgttttcaacttatttt |
221 |
Q |
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| T |
49202737 |
agaacttataaaaccagattatcacattgttcataagttgttttcaacttatttt |
49202683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 39968013 - 39967958
Alignment:
| Q |
166 |
gagaagttatgaaaacagattatcaaattgttcataaggtgttttcaacttatttt |
221 |
Q |
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| T |
39968013 |
gagaacttatgaaaacagcttatggcattgttcataagctgttttcaacttatttt |
39967958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 15740534 - 15740588
Alignment:
| Q |
167 |
agaagttatgaaaacagattatcaaattgttcataaggtgttttcaacttatttt |
221 |
Q |
| |
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|||| |||||||||||| |||| || ||| |||||||||||||||||||||||| |
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| T |
15740534 |
agaacttatgaaaacagcttatgaacatgtccataaggtgttttcaacttatttt |
15740588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 1575842 - 1575788
Alignment:
| Q |
167 |
agaagttatgaaaacagattatcaaattgttcataaggtgttttcaacttatttt |
221 |
Q |
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|||| |||||||||||| |||| || ||| |||||||||||||||||||||||| |
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| T |
1575842 |
agaacttatgaaaacagcttatgaacatgtccataaggtgttttcaacttatttt |
1575788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 9559391 - 9559444
Alignment:
| Q |
158 |
ctgtttatgagaagttatgaaaacagattatcaaattgttcataaggtgttttc |
211 |
Q |
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||||||| |||||||||||||||||| ||| | |||||||||||| ||||||| |
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| T |
9559391 |
ctgtttaggagaagttatgaaaacagcttacaacattgttcataagctgttttc |
9559444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 4625815 - 4625766
Alignment:
| Q |
172 |
ttatgaaaacagattatcaaattgttcataaggtgttttcaacttatttt |
221 |
Q |
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|||||||||||| |||| |||||||||||| ||||||||||||||||| |
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| T |
4625815 |
ttatgaaaacagcttatgaaattgttcatacattgttttcaacttatttt |
4625766 |
T |
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